ID:

dsi_5237

 Coordinate:

x:9027628-9027777 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-8.1 -7.7 -7.6

Flybase annnotation

intergenic

Repeatable elements

NameClassFamilyStrand
(TA)nSimple_repeatSimple_repeat+

Sense Strand Reads

GAGAGAGAGAGAGAGCGAGCGAGCGAGAGAAAGAGAGAGAGGACTACTAGGTAATGCTACGGTGTCCTTTCTGTAATTGTAAATGTTTATATAGAACCTATTACGAAGCGTTATATGATAATACTGCATACATATATATTTACATATATATAAATATAAATATGATATATTTAGCCACTATATTACTGATTTTTTTTTGTAATGTATTGCTTGTCTTTGTTTAGTGAATTTGTTTGTTGTTAACACTTAA
******************************************************.(((.((..((...(((((((..............)))))))...))..)).)))...****************************************************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M025
embryo
 M024
male body		 SRR553486
Makindu_3 day-old ovaries
 SRR553485
Chicharo_3 day-old ovaries
 SRR618934
dsim w501 ovaries
 M053
female body
 O002
Head
 SRR902009
testis
 SRR553487
NRT_0-2 hours eggs
 SRR553488
RT_0-2 hours eggs
 SRR902008
ovaries
 GSM343915
embryo
 M023
head
 O001
Testis
............................................................................................................................................................................................................................TTAGTGAATTTGTTTGTTGTTAACACT... 27 0 1 4.00 4 0 0 0 2 2 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................TGTTTAGTGAATTTGTTTGTTGTTAACACT... 30 0 1 3.00 3 0 0 1 2 0 0 0 0 0 0 0 0 0 0
........................................................................................ATATAGAACCTATTACGAAGCGTT.......................................................................................................................................... 24 0 1 3.00 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................AAGAGAGAGAGGACTACT.......................................................................................................................................................................................................... 18 0 1 3.00 3 2 1 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................................TAGTGAATTTGTTTGTTGTTAACACT... 26 0 1 3.00 3 0 0 2 1 0 0 0 0 0 0 0 0 0 0
..................................GAGAGAGGACTACTAGGTAATGCTAC.............................................................................................................................................................................................. 26 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................TGCTACGGTGTCCTTTCTGTAATT............................................................................................................................................................................ 24 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0
............................GAAAGAGAGAGAGGACTACTAGGT...................................................................................................................................................................................................... 24 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................AGAGAGAGGACTACTAGGTAATGCTAC.............................................................................................................................................................................................. 27 0 1 2.00 2 0 2 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................TTTTTTGTAATGTATTGCTTGTCTT................................. 25 0 1 2.00 2 0 0 0 0 2 0 0 0 0 0 0 0 0 0
...............................AGAGAGAGAGGACTACTAGGTAATGC................................................................................................................................................................................................. 26 0 1 2.00 2 0 1 0 0 1 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................................TTTAGTGAATTTGTTTGTTGTTAACACT... 28 0 1 2.00 2 0 0 1 1 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................ATTGCTTGTCTTTGTTTAGTGAATTTG.................. 27 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0
............................................................................................................................................................................................................TATTGCTTGTCTTTGTTTAGTG........................ 22 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0
..........................................................................................ATAGAACCTATTACGAAGC............................................................................................................................................. 19 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................TGTATTGCTTGTCTTTGTTTAGTGAAT..................... 27 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................TATTACGAAGCGTTATATGATAATA............................................................................................................................... 25 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................................TAGTGAATTTGTTTGTTGTTA........ 21 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................TTTGTAATGTATTGCTTGTCTTTGTT............................. 26 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
.........................AGAGAAAGAGAGAGAGGACT............................................................................................................................................................................................................. 20 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................TATATAGAACCTATTACGAAGC............................................................................................................................................. 22 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................ATTGTAAATGTTTATATAGAA.......................................................................................................................................................... 21 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0
.....................AGCGAGAGAAAGAGAGAGAGGACTA............................................................................................................................................................................................................ 25 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0
......................................GAGGACTACTAGGTAATGCTACGGT........................................................................................................................................................................................... 25 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0
.............................................................................................................................................................................................TTTTTTTTTGTAATGTATTGCTTGTCTT................................. 28 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................TGTTTAGTGAATTTGTTTGTT............ 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0
........................................................................................ATATAGAACCTATTACGAAGCGTTAT........................................................................................................................................ 26 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0
...................................................................................................ATTACGAAGCGTTATATGAT................................................................................................................................... 20 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................TTTTGTAATGTATTGCTTGTCTTTGTT............................. 27 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0
......................................................TGCTACGGTGTCCTTTCTGTAATTGT.......................................................................................................................................................................... 26 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0
....................................................................................................................................................................................................TTGTAATGTATTGCTTGTCT.................................. 20 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0
.....................................................................TCTGTAATTGTAAATGTTTATATA............................................................................................................................................................. 24 0 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0
..............................................................................................................................................................................................................TTGCTTGTCTTTGTTTAGTGAATTTGTT................ 28 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0
...............CGAGCGAGCGAGAGAAAGAGAGAG................................................................................................................................................................................................................... 24 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................TGCCACTATATTACTGATTTTTT....................................................... 23 1 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0
...............................................................GTCCTTTCTGTAATTGTAA........................................................................................................................................................................ 19 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................TGTAATGTATTGCTTGTCTTTGTTTAGTGA....................... 30 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0
..........................................................ACGGTGTCCTTTCTGTAATT............................................................................................................................................................................ 20 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0
.........................................GACTACTAGGTAATGCTACG............................................................................................................................................................................................. 20 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0
.....................................AGAGGACTACTAGGTAATGCC................................................................................................................................................................................................ 21 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
.............................AAAGAGAGAGAGGACTACT.......................................................................................................................................................................................................... 19 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
.......................CGAGAGAAAGAGAGAGAGGA............................................................................................................................................................................................................... 20 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0
......................................GAGGACTACTAGGTAATGCT................................................................................................................................................................................................ 20 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................TGCTTGTCTTTGTTTAGTGAATTTGTT................ 27 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0
............................................................GGTGTCCTTTCTGTAATTGTAAA....................................................................................................................................................................... 23 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
...............CGAGCGAGCGAGAGAAAGAG....................................................................................................................................................................................................................... 20 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0
....................................................................................................TTACGAAGCGTTATATGATAATA............................................................................................................................... 23 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................TTTTTTGTAATGTATTGCTTGTCTTT................................ 26 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................ACCTATTACGAAGCGTTCT........................................................................................................................................ 19 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
....................................GAGAGGACTACTAGGTAATGCTACGG............................................................................................................................................................................................ 26 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0
........................GAGAGAAAGAGAGAGAGGA............................................................................................................................................................................................................... 19 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0
.....................AGCGAGAGAAAGAGAGAGAGGACTAC........................................................................................................................................................................................................... 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................CCTTTCTGTAATTGTAAA....................................................................................................................................................................... 18 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1
..........................................................................................ATAGAACCTATTACGAAGCGTT.......................................................................................................................................... 22 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0
..........................................................................................................................................................................................................TGTATTGCTTGTCTTTGTTTAGTGAATT.................... 28 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0
.................AGCGAGCGAGAGAAAGAGAGAGAGGAC.............................................................................................................................................................................................................. 27 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0
.....................................................................................................................................................................................................TGTAATGTATTGCTTGTCTTTGTT............................. 24 0 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0
............................GAAAGAGAGAGAGGACTACTAGGC...................................................................................................................................................................................................... 24 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................ATTACTGATTTTTTTTTGTAATG.............................................. 23 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0
..........................................................................................................................................................................TTAGCCACTATATTACTGATTTTTT....................................................... 25 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................TTTTGTAATGTATTGCTTGTCTT................................. 23 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................TACTGATTTTTTTTTGTAATGTATTGCT....................................... 28 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................TGTTTAGTGAATTTGTTTGTTGTT......... 24 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0
....................................................AATGCTACGGTGTCCTTTCTGT................................................................................................................................................................................ 22 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................TTACTGATTTTTTTTTGT.................................................. 18 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................TATATAGAACCTATTACGAAGCGT........................................................................................................................................... 24 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0
............................................TACTAGGTAATGCTAC.............................................................................................................................................................................................. 16 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................TTTTTTTGTAATGTATTGCTTGTCT.................................. 25 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0
....................................................................................................................................................................ATATATTTAGCCACTATAT................................................................... 19 0 2 0.50 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0
.....................................................................TCTGTAATTGTAAATG..................................................................................................................................................................... 16 0 2 0.50 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0
.........AGAGAGCGAGCGAGCGAGA.............................................................................................................................................................................................................................. 19 0 3 0.33 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0
....................................GAGAGTAGTACTAGG....................................................................................................................................................................................................... 15 2 20 0.20 4 0 0 0 0 0 0 0 0 4 0 0 0 0 0
......................GCGAGAGAAAGAGAGAGA.................................................................................................................................................................................................................. 18 0 5 0.20 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0
......................................GAGGACTGCTACGTAAGG.................................................................................................................................................................................................. 18 3 20 0.10 2 0 0 0 0 0 0 0 0 0 0 0 0 2 0
..............GCGAACTAGCGAGAGTAAG......................................................................................................................................................................................................................... 19 3 17 0.06 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................GTATTACGACGCGTTA......................................................................................................................................... 16 2 20 0.05 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0
....GAGAGAGAGAGCGAGCG..................................................................................................................................................................................................................................... 17 0 20 0.05 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0

Anti-sense strand reads

CTCTCTCTCTCTCTCGCTCGCTCGCTCTCTTTCTCTCTCTCCTGATGATCCATTACGATGCCACAGGAAAGACATTAACATTTACAAATATATCTTGGATAATGCTTCGCAATATACTATTATGACGTATGTATATATAAATGTATATATATTTATATTTATACTATATAAATCGGTGATATAATGACTAAAAAAAAACATTACATAACGAACAGAAACAAATCACTTAAACAAACAACAATTGTGAATT
******************************************************************************************************************************************.(((.((..((...(((((((..............)))))))...))..)).)))...****************************************************** 		Read size # Mismatch Hit Count Total Norm Total M053
female body
 SRR553487
NRT_0-2 hours eggs
 SRR553488
RT_0-2 hours eggs
.............................................................................................................................................................................................AAAAAAAAACATTACATAA.......................................... 19 0 1 1.00 1 1 0 0
.............................................TGATCCATTACGATGCCACAGGAAAG................................................................................................................................................................................... 26 0 1 1.00 1 0 1 0
................................................................................................................................ATGCATATATGAATGTATATATATGT................................................................................................ 26 3 17 0.06 1 0 0 1
.............................................TGATCGATTAGGATGC............................................................................................................................................................................................. 16 2 20 0.05 1 0 0 1
...........................................GTTGATCGATTAGGATGC............................................................................................................................................................................................. 18 3 20 0.05 1 0 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 x:9027578-9027827 + dsi_5237 -GAGAGAGAGAGAGAGCGAG----CGAGCGAGAGAAAGAGAGAGAGG-ACTACTAGGTAAT------------GC-TA---------------------CGGTGTCCTT--TCTGTAATTGTAAATGTTTATATAGAACCTATTACGAAGCGTT----------------------------------------------------------------------------------------------ATA--TGATAATACT-GCA------------TAC----------ATATA--TATTTACATAT--ATA-------------------------------------------------TAAATAT--------------AAATAT------------GATAT----------AT-TTAGCCA-------------CTATATT--------------ACTGATTT----TTTT--TT---GTAA-TGTA-TTGCTT------G--TCTTTGTTTAGTGAATTTGTTTGTTGTTAACACT-------TAA
droSec2 scaffold_15:249635-249880 + AGAGAGAGAGCGAG----------CGAGCGAGAGAAAGAGAGAGAGG-AATACTAGGTAAT------------CC-TA---------------------CGGTGTCCTT--TCTGTAATTGTAAATGTTTATATAGAACCTATTACGAAGCGTT----------------------------------------------------------------------------------------------ATA--TGATAATACT-GCA------------TAC----------ATATA--TATTTACATAT--ATA-------------------------------------------------TAAATAT--------------AAATAT------------GATAT----------AT-TTAGCCA-------------CTATATT--------------ACTGATTTT---TTTT--TT---GTAA-TGTA-TTGCTT------G--TCTTTGTTTAGTGAATTTGTTTGTTGTTAACACT-------TAA
dm3 chrX:9482752-9482985 + -GAGCGAGAGAGAGCGAG----------CGAGAGAAAGAGAGAGAGG-ATTACTAGGTAAT------------GC-TA---------------------CGGTGTCCTT--TCTGTAATTGTAAATGTTTATATAGAACCTATTACGAAGCGTT----------------------------------------------------------------------------------------------ATA--TGATAATACT-GCA------------TAC----------ATATA--T--------------A-------------------------------------------------TAAATAT--------------AAATAT------------GATAT----------AT-TTAGCCA-------------CTATATT--------------ACTGATTTTT--TTTT--TT---GTAA-TGTA-TTGCTT------G--TCTTTGTTTAGTGAATTTGTTTGTTGTTAACACT-------TAA
droEre2 scaffold_4690:5633477-5633711 - -GAGAGAAAGAGAGA----------------------AAGAGAGAGG-AATACTAGGTAAT------------GC-TA---------------------CGGTGTCCTT--TCTGTAATTGTAAATGTTTATATAGAACCTATTACGAAGCGTT----------------------------------------------------------------------------------------------ATA--TGATAATACT-GCA------------TAC----------ATATA--TATTTACATAT--ATA-------------------------------------------------TAAATAT--------------AAATAT------------GATAT----------AT-TTAGCCA-------------CTATATT--------------ACTGATTTTT-TTTTT--TT---GTAA-TGTA-TTGCTT------G--TCTTTGTTTAGTGAATTTGTTTGTTGTTAACACT-------TAA
droYak3 X:18075443-18075706 + -GAGGAAGAGAGGAAGAGAGATTGAGAGGGAGAGAGAGAGAGAGAGG-AATACTAGGTAAT------------GC-TA---------------------CTGTGTCCTT--TCTGTAATTGTAAATGTTTATATAGAACCTATTACGAAGCGTT----------------------------------------------------------------------------------------------ATA--TGATAATACT-GCA------------TAC----------ATATA--TATTTACATAT--ATATA--------------TAT---A---T---------------A------TAAATAT--------------AAATAT------------GATAT----------AT-TTAGCCA-------------CTATATT--------------ACTGATTTTT--TTTT--TT---GTAA-TGTA-TTGCTT------G--TCTTTGTTTAGTGAATTTGTTTGTTGTTAACACT-------TAA
droEug1 scf7180000409032:442844-443087 - -GAGAGATAGAAAGAGAGAT----GGA----------GAAAGAGAGG-AATACTAGGTAAT------------GC-TA---------------------CGGTGTCCTT--TCTGTAATTGTAAATGTTTATATAGAACCTATTACGAAGCGTT----------------------------------------------------------------------------------------------ATA--TGATAATACT-GCA------------TAC----------ATATA--TATTTACATAT--ATATA--------------TA-------------------------------CATATAT--------------AAATAT------------GATAT----------AT-TTAGCCA-------------CTATATT--------------ACTAATTT----TTTT--TT---GTAA-TGTA-TTGCTT------G--TCTTTGTTTAGTGAATTTGTTTGTTGTTAACACT-------TAA
droBia1 scf7180000301760:5468278-5468531 + -ACGGGAGACAGAAAGGGAG----GGAGCGCGAGAGAGGGAGAGGGG-CATACTAGGTAGT------------GC-TA---------------------CCGTGTCCTT--TCTCTAACTGTAAATGTTTATATAGAACCTATTACGAAGCGTTATAATAATACGT-----------------------------------------------------------------------------------TA--TGATAATACT-GCA------------TAC----------ATATA--TATTTACATAT--ATA-------------------------------------------------TACATAT--------------AAATAC------------GATAT----------AT-TTAGCCA-------------CTATATT--------------ACTGATT--------T--TT---GTAA-TGTA-TTGCTT------G--TCT-TGTTTAGTGAATGTGTTTGTTGTTAA--CT-------TAA
droTak1 scf7180000415872:105095-105326 + -GAGACAAA----------------------------GAGAGAGAGG-AATACTAGGTAAT------------GC-TA---------------------CGGTGTCCTT--TCAGAAATTGTAAATGTTTATATAGAACCTATTACGAAGCGTT----------------------------------------------------------------------------------------------ATA--TGATAATACT-GCA------------TAC----------ATATA--TATTTACATAT--ATATA--------------TA--------T---------------A------TAAATAT--------------AAATAT------------GATAT----------AT-TTAGCCA-------------CTATATT--------------ACTGATTT----TTTT--TT---GTAA-TGTA-TTGCTT------G--TCTTTGTTTAGTGAATTTGTTTGTTGTTAACACT-------TAA
droEle1 scf7180000491013:293976-294221 + -GACAGAGAGGGAGAGAGAG----A------------GAGAGAGAGG-AATACTAGGTAAA------------GC-TA---------------------ACGTGTCCTT--TCTGTAATTGTAAATGTTTATATAGAACCTATTACGAAGCGTT----------------------------------------------------------------------------------------------ATA--TGATAATACT-GCA------------TAC----------ATATA--TATTTACATAA--ATATA--------------TAT---A---T---------------A------TATATAT--------------AAATAT------------AATAT----------AT-TTAGCCA-------------CTATATT--------------ACTGATTT----TTTT--TT---GTAA-TGTA-TTGCTT------G--TCTTTGTTTAGTGAATTTGTTTGTTGTTAACACT-------TAA
droRho1 scf7180000780080:616253-616495 - -GAGAGAGAGAAAGA----------------------GAGAGAGAGG-AATACTAGGTAAA------------GC-TA---------------------CGGTGTCCTT--TCTGTAATTGTAAATGTTTATATAGAACCTATTACGAAGCGTT----------------------------------------------------------------------------------------------ATA--TGATAATACT-GCA------------TAC----------ATATATATA-TTACATAT--ATATA--------------TATTT-A---T---------------A------TATATAT--------------AAATAT------------GATAT----------AT-TTAGCCA-------------CTATATT--------------ACTGATTT----TTTT--TT---GTAA-TGTA-TTGCTT------G--TCTTTGTTTAGTGAATTTGTTTGTTGTTAACACT-------TAA
droFic1 scf7180000454073:2412210-2412441 + -GAGAGAGAGAGAAA----------------------GAGAGAGAGG-AATACTAGGTAAA------------GC-TA---------------------TGGTGTCCTT--TCTGTAATTGTAAATGTTTATATAGAACCTATTACGAAGCGTT----------------------------------------------------------------------------------------------ATA--TGATAATACT-GCA------------TAC----------ATATA--TATTTACATAT--ATA-------------------------------------------------TATATAT--------------AAATAT------------GATAT----------AT-TTAGCCA-------------CTATATT--------------ACTGATTT----TTTT--TT---GTAA-TGTA-TTGCTT------G--TCTTTGTTTAGTGAATTTGTTTGTTGTTAACACT-------TAA
droKik1 scf7180000302592:81328-81566 - -CAAGGAGA------------------------------------TG-AGCTCTAGGAAGA------------TCAAA---------------------CGGTGTCCTT--TCTGTAATTGTAAATGTTTATATAGAACCTATTACGAAGCGTT----------------------------------------------------------------------------------------------ATA--TGATAATACTTGCA------------TAC----------ACATATATATTTACATAT--ATATA--------------TAT---AC--T---------------A------TATATAT--------------AAATAT------------GATAT----------AT-TTAGCCA------------ACTATATT-----ACAGAT---ATT-ACTT----TTTT--TT---TTAA-CGTA-TTGCTT------GTGTCTTTGTTTAGTGAACTTGTTTGTTGTTAACATT-------TAA
droAna3 scaffold_13248:3436181-3436471 - -GAGAGAGAGAGAGACAGGG----AGTGCGACAGGGAGAGAGACAGGAAATACTAGGCGAA------------G--------AAACCGACGGCGCTAGACGGTGTCCTT--TCTGTAATTGTAAATGTTTATATAGAACCTATTACGAAGCGTT----------------------------------------------------------------------------------------------ATA--TGATAATACTTGCA------------TAC----------ATATA--TATTTACATAT--ATATA--------------T---------------------------------ATATATA-------------AAATAT------------GATAT----------ACATTAGCCA-------------CTATATT--------------ACTGACTTTT--TTTTTTTTTGTGTAATTGTA-CTGCTTTGTACGG--TCTTTGTTTAGTGAATTTGTTTGTTGTTTAAACTAAACATATAA
droBip1 scf7180000396733:355100-355396 - -GAGAGAGAGAGAGA----------------------------TAGGAAATACTAGGCGAAGATGAACCCTAC-----GAGGAACCCTACGGCGCTAGATGGTGTCCTT--TCTGTAATTGTAAATGTTTATATAGAACCTATTACGAAGCGTT----------------------------------------------------------------------------------------------ATA--TGATAATACTTGCA------------TAC----------ATATATATATTTAC-TATATATATA-TAT--------A-TATCTATA--TCT------ATA-TATA------TATATATA-------------AAATAT------------GATAT----------ACATTAGCCA-------------CTATATA----------TATTACTGACTTTTTTTTTT--TT---GTAA-TCTACTTGCTTTGTACTG--TCTTTGTTTAGTGAATTTGTTTGTTGTTAAA-----------AA
dp5 XL_group1e:10109069-10109349 - -AAAAAAGAAATAAATAAA-------------------------AAA-AATACTAAAAAA------------------GAGGAAATCACCCCCGCCGG-TGGTGTCCATCCTCTATAATTGTAAATGTTTATATAGAACCTATTATGAAGCGTT----------------------------------------------------------------------------------------------ATA--TGATAATACTTGCA------------TACACACACACACAGACACAA-C--------ACACACA-CACACA--CACAAAC-AAACACACAT------ATATTATATATATATAAA-----------------AAACAT-ACATAT-----AT--T----------AT-TTAGCCA-------------CTATATA--------------ATTACGTTAT--TTTT--TT-----------A-TTA-TT------G--TCTTCGCTTAGTAAATTTGTTC-----TAAGATT-------TAA
droPer2 scaffold_22:121132-121407 + -AAAACAAACAAAAAATAAA----TA----------------AAAAA-AATACTAAAAAA------------------GAGGAAAACACCCCCGCCGG-AGGTGTCCTTCCTCTACAATTGTAAATGTTTATATAGAACCTATTATGAAGCGTT----------------------------------------------------------------------------------------------ATA--TGATAATACTTGCATACACACACACACAC----------AGACACAA-CACACACAC--AC---------------AAAC-AAACA--CAT------ATATTATATATATATAAACAT--------------ACATAT------------AT--T----------AT-TTAGCCA-------------CTATATA--------------ATTACGTTA---TTTT--TT-----------A-TTA-TT------G--TCTTCGCTTAGTAAATTTTTT-----CTAAGATT-------TAA
droWil2 scf2_1100000004454:1888-2111 + -GAGAGAGAGAGAGAGAGAG----AGATAGAGTGAGAGGGGGAGAAA-AATGATAGTTAAT------------GA----------------------------------------TAGTTAAAGATGATGGCATGATAGTTAATAAAAGAATCG----------------------------------------------------------------------------------------------AGC--AGACAATACA-ATA------------TAC----------ATAAA--TATATACATAT--ATGAA--------------GATTT-T---C---------------T------TATATAT--------------AAATAC-----------CTAAAA----------AC-GCAGCCTCTAAATTAAGCTATAAAATTATATAAA-------ATAAAT---------------------------TTTCTT------T--TTTTTATTTAGT--------------------------------
droVir3 scaffold_12928:3470827-3471040 + -GAGAGAGAGAGAGAGAGAG----AGAGAGAGAGAGAGAGACAGAGG-GA-----GCAAGT------------GC-AA---------------------TTATGTTTC------------ATATGAGTTCATTTAAATCACAATCAAAATGAATATAATAATACTT-----------------------------------------------------------------------------------AA--TAAAATAAGT-GTT------------A------------AGATATAAA---------CTAAGTA-TAATTAATATTAAGT-ATTACTATTA------ATAT----------TAAATAC--------------ACATAT----------------------------------------------------------------------------------------------GAAA-TG---TTTCTA------T--TATTTTTTTATTTAATTT--------------------------
droMoj3 scaffold_6473:12713327-12713578 - -GAGAGAGAGAGAGAGAGAG----AGAGAGAGAGAGAGAGATAGAGA-ACTAAAAGTTATA------------AA-AG---------------------AGACAACATA--GTTAAA--------------------------------------------------------------------------------------------------------------------------------------------------------------------A----------AAATA--TACTTATATAT--ATAACCAAACTATTTTTAAGT-ATAATC--TAATGGTGAAA-TGAATATG--TATATCCGAGCTACACTGTAGAGAAAAGAAAAGTTCTC-TC--TGCTCTCTCACTC-CTAGCTA-------------CTATACT-------------------------------------------ATG-CAGCTT------T--ATGGCATTTGGTTAATTTATTTGTTGTTCACATA-------TAT
droGri2 scaffold_15126:3752151-3752451 - -GAAAGAGAGAGAGAGCGGG----AGAGGGAGAGAGACAGAGAGAGA-GAG-----------------------A----------------------------------------GAGTTAAAGAGATCGGGTGGGTGAAGAGCTGCAGAGCTG------------AAAAGCCAAAATAAACATGAGAAGTACACCTTTTTGGGAGGAAAATTCATTGCATTTGGAAAAGAAATTATGAAAAAAAGATATGTCTAAAAATACTCGCA------------TAC----------AGACAGAG-TTTAAATAT--ATT-G--------------TA-------------------------------CA-GAAT--------------ATATAT------------AGTAT----------AT-TTAA--A-------------ATATATA--------------ACAATTTA-T--TTTA--TA---ACAT-TGTA-TTTCTT------A--CGCACGTTTTGTATTTTTGCTTTATATT----------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
-GAGAGAGAGAGAGAGCGAG----CGAGCGAGAGAAAGAGAGAGAGG-ACTACTAGGTAAT------------GC-TA---------------------CGGTGTCCTT--TCTGTAATTGTAAATGTTTATATAGAACCTATTACGAAGCGTT----------------------------------------------------------------------------------------------ATA--TGATAATACT-GCA------------TAC----------ATATA--TATTTACATAT--ATA-------------------------------------------------TAAATAT--------------AAATAT------------GATAT----------AT-TTAGCCA-------------CTATATT--------------ACTGATTT----TTTT--TT---GTAA-TGTA-TTGCTT------G--TCTTTGTTTAGTGAATTTGTTTGTTGTTAACACT-------TAASizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAGTGAATTTGTTTGTTGTTAACACT-------...2714.00400000020002000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTTTAGTGAATTTGTTTGTTGTTAACACT-------...3013.00300000021000000000
..................................................................................................................................ATATAGAACCTATTACGAAGCGTT----------------------------------------------------------------------------------------------..................................................................................................................................................................................................................................................................................................................2413.00300300000000000000
...................................AAGAGAGAGAGG-ACTACT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1813.00301200000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAGTGAATTTGTTTGTTGTTAACACT-------...2613.00300000012000000000
.......................................GAGAGAGG-ACTACTAGGTAAT------------GC-TA---------------------C......................................................................................................................................................................................................................................................................................................................................................................................................................................................................2612.00200200000000000000
............................................................T------------GC-TA---------------------CGGTGTCCTT--TCTGTAATT..................................................................................................................................................................................................................................................................................................................................................................................................................................................2412.00200200000000000000
.................................GAAAGAGAGAGAGG-ACTACTAGGT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2412.00200200000000000000
......................................AGAGAGAGG-ACTACTAGGTAAT------------GC-TA---------------------C......................................................................................................................................................................................................................................................................................................................................................................................................................................................................2712.00202000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTT--TT---GTAA-TGTA-TTGCTT------G--TCTT........................................2512.00200000000002000000
....................................AGAGAGAGAGG-ACTACTAGGTAAT------------GC-..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2612.00201000000001000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTAGTGAATTTGTTTGTTGTTAACACT-------...2812.00200000011000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A-TTGCTT------G--TCTTTGTTTAGTGAATTTG.........................2711.00100000100000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TA-TTGCTT------G--TCTTTGTTTAGTG...............................2211.00110000000000000000
....................................................................................................................................ATAGAACCTATTACGAAGC...................................................................................................................................................................................................................................................................................................................................................................................................................1911.00101000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTA-TTGCTT------G--TCTTTGTTTAGTGAAT............................2711.00100000001000000000
............................................................................................................................................TATTACGAAGCGTT----------------------------------------------------------------------------------------------ATA--TGATAATA.....................................................................................................................................................................................................................................................................................................2511.00100000010000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAGTGAATTTGTTTGTTGTTA...............2111.00100000000001000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T--TT---GTAA-TGTA-TTGCTT------G--TCTTTGTT....................................2611.00101000000000000000
..............................AGAGAAAGAGAGAGAGG-ACT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00101000000000000000
.................................................................................................................................TATATAGAACCTATTACGAAGC...................................................................................................................................................................................................................................................................................................................................................................................................................2211.00101000000000000000
.....................................................................................................................ATTGTAAATGTTTATATAGAA................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100000000100000000
..........................AGCGAGAGAAAGAGAGAGAGG-ACTA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00100000000000001000
...........................................GAGG-ACTACTAGGTAAT------------GC-TA---------------------CGGT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00100000000000010000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTT----TTTT--TT---GTAA-TGTA-TTGCTT------G--TCTT........................................2811.00100000001000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTTTAGTGAATTTGTTTGTT...................2111.00100000001000000000
..................................................................................................................................ATATAGAACCTATTACGAAGCGTT----------------------------------------------------------------------------------------------AT................................................................................................................................................................................................................................................................................................................2611.00100000010000000000
.............................................................................................................................................ATTACGAAGCGTT----------------------------------------------------------------------------------------------ATA--TGAT.........................................................................................................................................................................................................................................................................................................2011.00101000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TT--TT---GTAA-TGTA-TTGCTT------G--TCTTTGTT....................................2711.00100000001000000000
............................................................T------------GC-TA---------------------CGGTGTCCTT--TCTGTAATTGT................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00100000000000100000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TT---GTAA-TGTA-TTGCTT------G--TCT.........................................2011.00100000100000000000
...............................................................................................................TCTGTAATTGTAAATGTTTATATA...................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00100000000010000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGCTT------G--TCTTTGTTTAGTGAATTTGTT.......................2811.00100010000000000000
................CGAG----CGAGCGAGAGAAAGAGAGAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00100000000001000000
.......................................................................................................GTCCTT--TCTGTAATTGTAA..............................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100100000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T---GTAA-TGTA-TTGCTT------G--TCTTTGTTTAGTGA..............................3011.00100000010000000000
.............................................................................A---------------------CGGTGTCCTT--TCTGTAATT..................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100000000000001000
..............................................G-ACTACTAGGTAAT------------GC-TA---------------------CG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100000000001000000
..........................................AGAGG-ACTACTAGGTAAT------------GC-C.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00101000000000000000
..................................AAAGAGAGAGAGG-ACTACT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00101000000000000000
............................CGAGAGAAAGAGAGAGAGG-A.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100000100000000000
...........................................GAGG-ACTACTAGGTAAT------------GC-T.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00101000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCTT------G--TCTTTGTTTAGTGAATTTGTT.......................2711.00100000010000000000
....................................................................................................GGTGTCCTT--TCTGTAATTGTAAA.............................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00100100000000000000
................CGAG----CGAGCGAGAGAAAGAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100000000001000000
..............................................................................................................................................TTACGAAGCGTT----------------------------------------------------------------------------------------------ATA--TGATAATA.....................................................................................................................................................................................................................................................................................................2311.00100000001000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTT--TT---GTAA-TGTA-TTGCTT------G--TCTTT.......................................2611.00100000001000000000
.........................................GAGAGG-ACTACTAGGTAAT------------GC-TA---------------------CGG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00100000000000010000
.............................GAGAGAAAGAGAGAGAGG-A.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100000100000000000
..........................AGCGAGAGAAAGAGAGAGAGG-ACTAC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00100100000000000000
.........................................................................................................CCTT--TCTGTAATTGTAAA.............................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00100001000000000000
....................................................................................................................................ATAGAACCTATTACGAAGCGTT----------------------------------------------------------------------------------------------..................................................................................................................................................................................................................................................................................................................2211.00100000000000100000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTA-TTGCTT------G--TCTTTGTTTAGTGAATT...........................2811.00100000001000000000
..................AG----CGAGCGAGAGAAAGAGAGAGAGG-AC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00100000000000001000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T---GTAA-TGTA-TTGCTT------G--TCTTTGTT....................................2411.00100000000010000000
.................................GAAAGAGAGAGAGG-ACTACTAGGC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00100100000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................ATT--------------ACTGATTT----TTTT--TT---GTAA-TG..............................................................2311.00100010000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................TTAGCCA-------------CTATATT--------------ACTGATTT----TTT.............................................................................2511.00100010000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TT--TT---GTAA-TGTA-TTGCTT------G--TCTT........................................2311.00100010000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................T--------------ACTGATTT----TTTT--TT---GTAA-TGTA-TTGCT......................................................2811.00100000001000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTTTAGTGAATTTGTTTGTTGTT................2411.00100000001000000000
..........................................................AAT------------GC-TA---------------------CGGTGTCCTT--TCTGT......................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00101000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................TT--------------ACTGATTT----TTTT--TT---GT...................................................................1811.00100100000000000000
.................................................................................................................................TATATAGAACCTATTACGAAGCGT.................................................................................................................................................................................................................................................................................................................................................................................................................2411.00100000001000000000
..................................................TACTAGGTAAT------------GC-TA---------------------C......................................................................................................................................................................................................................................................................................................................................................................................................................................................................1611.00100000000001000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T----TTTT--TT---GTAA-TGTA-TTGCTT------G--TCT.........................................2511.00100000000100000000
....................................................................................................................................................................................................................................................................................................................................................................................................................ATAT----------AT-TTAGCCA-------------CTATAT...........................................................................................................1920.50100010000000000000
...............................................................................................................TCTGTAATTGTAAATG...........................................................................................................................................................................................................................................................................................................................................................................................................................................1620.50100000000001000000
..........AGAGAGCGAG----CGAGCGAGA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1930.33100000000001000000
...........................GCGAGAGAAAGAGAGAGA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1850.20100010000000000000
.....GAGAGAGAGAGCGAG----CG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................17200.05100000000001000000
droSec2
AGAGAGAGAGCGAG----------CGAGCGAGAGAAAGAGAGAGAGG-AATACTAGGTAAT------------CC-TA---------------------CGGTGTCCTT--TCTGTAATTGTAAATGTTTATATAGAACCTATTACGAAGCGTT----------------------------------------------------------------------------------------------ATA--TGATAATACT-GCA------------TAC----------ATATA--TATTTACATAT--ATA-------------------------------------------------TAAATAT--------------AAATAT------------GATAT----------AT-TTAGCCA-------------CTATATT--------------ACTGATTTT---TTTT--TT---GTAA-TGTA-TTGCTT------G--TCTTTGTTTAGTGAATTTGTTTGTTGTTAACACT-------TAASizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
.........GCGAG----------CGAGCGAGAGAAAGA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010010
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTA-TTGCTT------G--TCTTTGTTTAGTGA..............................2411.0010100
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGTTTAGTGAATTTGTTTGTTGTT................2611.0010100
.........................................................TAAT------------CC-TA---------------------CGGTGTCCTT--TCT........................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0011000
......................................................................................................................................................................................................................................................................................................................................................................................................................AT----------AT-TTAGCCA-------------CTATATT--------------ACTGATT.....................................................................................2511.0011000
.................................................................................................................................TATATAGAACCTATTACGAAGCGTT----------------------------------------------------------------------------------------------A.................................................................................................................................................................................................................................................................................................................2611.0011000
..........................................................................C-TA---------------------CGGTGTCCTT--TCTGT......................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010010
.......................................................................................................GTCCTT--TCTGTAATTGTAAATGTTT........................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010001
.............G----------CGAGCGAGAGAAAGAGAGAGAGG-AAT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010100
...GAGAGAGCGAG----------CGAGCGAGAGAAA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010100
...........................................................................................................................................CTATTACGAAGCGTT----------------------------------------------------------------------------------------------ATA--TGATAATA.....................................................................................................................................................................................................................................................................................................2611.0011000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTT------G--TCTTTGTTTAGTGAATT...........................2211.0010001
...........................GCGAGAGAAAGAGAGAGAGG-G.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21130.0810001
dm3
-GAGCGAGAGAGAGCGAG----------CGAGAGAAAGAGAGAGAGG-ATTACTAGGTAAT------------GC-TA---------------------CGGTGTCCTT--TCTGTAATTGTAAATGTTTATATAGAACCTATTACGAAGCGTT----------------------------------------------------------------------------------------------ATA--TGATAATACT-GCA------------TAC----------ATATA--T--------------A-------------------------------------------------TAAATAT--------------AAATAT------------GATAT----------AT-TTAGCCA-------------CTATATT--------------ACTGATTTTT--TTTT--TT---GTAA-TGTA-TTGCTT------G--TCTTTGTTTAGTGAATTTGTTTGTTGTTAACACT-------TAASizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
..................................................TACTAGGTAAT------------GC-TA---------------------CGGTGTCCTT--...........................................................................................................................................................................................................................................................................................................................................................................................................................................................25113.00130000000000000000000000000000000000000000000000000000000000000000000000000000000000000020100000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000040000100110001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
............................................................................................................................................TATTACGAAGCGTT----------------------------------------------------------------------------------------------ATA--TGATAATACT-..................................................................................................................................................................................................................................................................................................2719.0090000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000201000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000100200000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAGTGAATTTGTTTGTTGTTAACACT-------...2618.0080000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020200110000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000010000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTTTGTTTAGTGAATTTGTTTGTTGT.................2717.0070000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010002000000000000000000000000000000000000010000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTAGTGAATTTGTTTGTTGTTAACACT-------...2816.0060000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000010020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010100000
.................................................TTACTAGGTAAT------------GC-TA---------------------CGGTGTCCT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................2516.0060000000000000000000000000000000000000000000000000010000001000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100010000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000
....................................................................................................................................ATAGAACCTATTACGAAGCGTT----------------------------------------------------------------------------------------------..................................................................................................................................................................................................................................................................................................................2216.0060000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000100000000000000000200010000000
....................................................CTAGGTAAT------------GC-TA---------------------CGGTGTCCTT--...........................................................................................................................................................................................................................................................................................................................................................................................................................................................2316.0060000000000000000000000000000000000000000000000000000000000000000000000000000000000004000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................TTATATAGAACCTATTACGAAGCGTT----------------------------------------------------------------------------------------------..................................................................................................................................................................................................................................................................................................................2616.0060000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100101100000
.................................................................................................................................TATATAGAACCTATTACGAAGCGTT----------------------------------------------------------------------------------------------..................................................................................................................................................................................................................................................................................................................2516.0060000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000101101200000
.....................................................TAGGTAAT------------GC-TA---------------------CGGTGTCCT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................2115.0050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000200000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................A---------------------CGGTGTCCTT--TCTGTAATTGTAA..............................................................................................................................................................................................................................................................................................................................................................................................................................................2415.0050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000400000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................GAGAGAGAGG-ATTACTAGGTAAT------------GC-..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2515.0050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001004000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGTTTAGTGAATTTGTTTGTTGT.................2515.0050000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
..............................................................................................................................................TTACGAAGCGTT----------------------------------------------------------------------------------------------ATA--TGATAATACT-GC................................................................................................................................................................................................................................................................................................2714.0040000000000000000000000010000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCTT------G--TCTTTGTTTAGTGAATTTGTT.......................2714.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000010000011000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGTTTAGTGAATTTGTTTGTTG..................2414.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................GCGTT----------------------------------------------------------------------------------------------ATA--TGATAATACT-GCA------------...................................................................................................................................................................................................................................................................................2114.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000400000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTTTAGTGAATTTGTTTGTTGT.................2314.0040000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000
.............GCGAG----------CGAGAGAAAGAGAGAGAGG-..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2414.0040000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000101000000000000000000000000
......................................................AGGTAAT------------GC-TA---------------------CGGTGTCCTT--TCT........................................................................................................................................................................................................................................................................................................................................................................................................................................................2413.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
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.........................................................................................................................................ACCTATTACGAAGCGTT----------------------------------------------------------------------------------------------ATA--TGATAATACT-..................................................................................................................................................................................................................................................................................................3011.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TT--TT---GTAA-TGTA-TTGCTT------G--TCTTTG......................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................TA--TGATAATACT-GCA------------TAC----------ATATA--T--------------A-------------------------------------------------..............................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................TAATACT-GCA------------TAC----------ATATA--T--------------A-------------------------------------------------TAAATA........................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................TACGAAGCGTT----------------------------------------------------------------------------------------------ATA--TGATAATAC....................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000
..............................................G-ATTACTAGGTAAT------------GC-TA---------------------CGGTGTCC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGCTT------G--TCTTTGTTTAGTGAA.............................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000
.........................................................................GC-TA---------------------CGGTGTCCTT--TCTGTAA....................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T------G--TCTTTGTTTAGTGAATTTGTTTG.....................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTTTAGTGAATTTGTTTGTT...................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
.......................................................................................................................................................GTT----------------------------------------------------------------------------------------------ATA--TGATAATACT-GCA------------...................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................AGAGAGG-ATTACTAGGTAAT------------GC-TA---------------------CG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................T--TCTGTAATTGTAAATGTTT........................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................TAGGTAAT------------GC-TA---------------------CGGTGTCC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTGATTTTT--TTTT--TT---GTAA-TGT.............................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T------G--TCTTTGTTTAGTGAATTTGTT.......................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................TGATAATACT-GCA------------TAC----------ATATA--T--------------A-------------------------------------------------..............................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................TATATT--------------ACTGATTTTT--TTTT--TT---GT...................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000
.......GAGAGAGCGAG----------CGAGAGAAAGAGAGA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................TACGAAGCGTT----------------------------------------------------------------------------------------------ATA--TGATAATACT-..................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
.......GAGAGAGCGAG----------CGAGAGAAAGT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................ATTACGAAGCGTT----------------------------------------------------------------------------------------------ATA--TGA..........................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................TA--TGATAATACT-GCA------------TAC----------ATATA--T--------------A-------------------------------------------------T.............................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTTGTTTAGTGAATTTGTT.......................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000
..........................................................AAT------------GC-TA---------------------CGGTGTCCTT--TCTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTT--TTTT--TT---GTAA-TGTA-TTGCT......................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAGTGAATTTGTTTGTTGTTAACACC-------...2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATT--------------ACTGATTTTT--TTTT--..........................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................TATTACGAAGCGTT----------------------------------------------------------------------------------------------ATA--TGATAAT......................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................AGAACCTATTACGAAGCGT.................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................TTACGAAGCGTT----------------------------------------------------------------------------------------------ATA--TGAT.........................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
................................................ATTACTAGGTAAT------------GC-TA---------------------CGGTGTC................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TT--TTTT--TT---GTAA-TGTA-TTGCTT------G--TCT.........................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTTTT--TTTT--TT---GTAA-TGTA-TTGCT......................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................TAAT------------GC-TA---------------------CGGTGTCCTT--TC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTTGTTTGTTGTTAACA............2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................TAATACT-GCA------------TAC----------ATATA--T--------------A-------------------------------------------------TAAATAT--------------AT.......................................................................................................................................................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................TTATATAGAACCTATTACGAAGCGTT----------------------------------------------------------------------------------------------A.................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.GAGCGAGAGAGAGCGAG----------CGAGAGAAAGA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................ATATAGAACCTATTACGAAGCG..................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........AGAGAGCGAG----------CGAGAGAAAGA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000
...............................................................................................................TCTGTAATTGTAAATGTTTATATAGAACCT.............................................................................................................................................................................................................................................................................................................................................................................................................................3011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................AAT------------GC-TA---------------------CGGTGTCCTT--TCTGT......................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................C----------ATATA--T--------------A-------------------------------------------------TAAATAT--------------AAATAT------------GAT....................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................AAATGTTTATATAGAACCTAT...........................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................ATATAGAACCTATTACGAAGCGTT----------------------------------------------------------------------------------------------..................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTTGTTTAGTGAATTTGTTTGTTG..................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................AGCGTT----------------------------------------------------------------------------------------------ATA--TGATAATAC....................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGTTTAGTGAATTTGTTTGTTGT.................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
....................................AGAGAGAGAGG-ATTACTAGG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................TAAT------------GC-TA---------------------CGGTGTCCTT--TCTGTA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................TTACGAAGCGTT----------------------------------------------------------------------------------------------ATA--TGA..........................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000
.............GCGAG----------CGAGAGAAAGAGAGAGAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................GGTAAT------------GC-TA---------------------CGGTGTCC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................CA-------------CTATATT--------------ACTGATTTTT--TT..............................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................T-TTAGCCA-------------CTATATT--------------ACTGATTTT...................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................TTTATATAGAACCTATTACGAAGCGTT----------------------------------------------------------------------------------------------..................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTT--TTTT--TT---GTAA-TGTA-TT.........................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................TAT----------AT-TTAGCCA-------------CTATATT--------------ACTGATT.....................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................TTATATAGAACCTATTAC........................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................GCGTT----------------------------------------------------------------------------------------------ATA--TGATAATACT-GCA------------TAC----------A.....................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................TT--TCTGTAATTGTAAATGT..........................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000
...............................................................................................................................TTTATATAGAACCTATTACGAAGCGT.................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCTT------G--TCTTTGTTTAGT................................1811.0010000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droEre2
-GAGAGAAAGAGAGA----------------------AAGAGAGAGG-AATACTAGGTAAT------------GC-TA---------------------CGGTGTCCTT--TCTGTAATTGTAAATGTTTATATAGAACCTATTACGAAGCGTT----------------------------------------------------------------------------------------------ATA--TGATAATACT-GCA------------TAC----------ATATA--TATTTACATAT--ATA-------------------------------------------------TAAATAT--------------AAATAT------------GATAT----------AT-TTAGCCA-------------CTATATT--------------ACTGATTTTT-TTTTT--TT---GTAA-TGTA-TTGCTT------G--TCTTTGTTTAGTGAATTTGTTTGTTGTTAACACT-------TAASizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
....................................................................................................................................ATAGAACCTATTACGAAGCGTT----------------------------------------------------------------------------------------------..................................................................................................................................................................................................................................................................................................................2213.0030000120
................................................................................................................................TTATATAGAACCTATTACGAAGCGTT----------------------------------------------------------------------------------------------..................................................................................................................................................................................................................................................................................................................2612.0020001010
...........GAGA----------------------AAGAGAGAGG-AATA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1812.0020000020
..............................................................................................................................GTTTATATAGAACCTATTACGAAGC...................................................................................................................................................................................................................................................................................................................................................................................................................2512.0022000000
......................................................................................................................................AGAACCTATTACGAAGCGTT----------------------------------------------------------------------------------------------..................................................................................................................................................................................................................................................................................................................2012.0020000110
..............................................................................................................................GTTTATATAGAACCTATTACGAAGCGTT----------------------------------------------------------------------------------------------..................................................................................................................................................................................................................................................................................................................2812.0020000200
.................................................ATACTAGGTAAT------------GC-TA---------------------CGGTGTCCT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0011000000
...........GAGA----------------------AAGAGAGAGG-AATACTAGGTAAT------------G................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000100
..................................................................................................................................ATATAGAACCTATTACGAAGCGTT----------------------------------------------------------------------------------------------..................................................................................................................................................................................................................................................................................................................2411.0010000100
...........................................GAGG-AATACTAGGTAAT------------GC-T.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000010
........................................................................................................................................AACCTATTACGAAGCGTT----------------------------------------------------------------------------------------------ATA--T............................................................................................................................................................................................................................................................................................................2211.0010000100
..............................................................................................................................GTTTATATAGAACCTATTACGA......................................................................................................................................................................................................................................................................................................................................................................................................................2211.0011000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAGTGAATTTGTTTGTTGTTAAC.............2311.0010000100
.........................................................................................................................TAAATGTTTATATAGAACCTATTACGA......................................................................................................................................................................................................................................................................................................................................................................................................................2711.0011000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T---GTAA-TGTA-TTGCTT------G--TCTTTGT.....................................2311.0010000100
..............................................G-AATACTAGGTAAT------------GC-TA---------------------CGGT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000010
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAATTTGTTTGTTGTTAAC.............2111.0010000010
.......................................................................................................................................GAACCTATTACGAAGCGTT----------------------------------------------------------------------------------------------ATA--TGATA........................................................................................................................................................................................................................................................................................................2711.0010000100
.......................................................................................................................................GAACCTATTACGAAGCGTT----------------------------------------------------------------------------------------------..................................................................................................................................................................................................................................................................................................................1911.0010000100
.........................................GAGAGG-AATACTAGGTAAT------------GC-..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000010
.............................................................................................................................................................................................................................................................TGATAATACT-GCA------------TAC----------ATATA--T..............................................................................................................................................................................................................................................................2211.0011000000
.............GA----------------------AAGAGAGAGG-AATACTAGGT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000100
.......................................GAGAGAGG-AATACTAGGTAAT------------GC-..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000010
....................................................CTAGGTAAT------------GC-TA---------------------CGGTGTCCT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000010
..............................................................................................................................GTTTATATAGAACCTATTAC........................................................................................................................................................................................................................................................................................................................................................................................................................2011.0011000000
.......................................................................................................................................................GTT----------------------------------------------------------------------------------------------ATA--TGATAATACT-GCA------------TAC----------AT....................................................................................................................................................................................................................................................................2411.0011000000
..........AGAGA----------------------AAGAGAGAGG-AATA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000100
....................................................................................................................................ATAGAACCTATTACGAAGCGT.................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000010
..........................................................AAT------------GC-TA---------------------CGGTGTCCTT--TCTGTA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0011000000
.............................................GG-AATACTAGGTAAT------------GC-TA---------------------C......................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0011000000
.......................................................................................................................TGTAAATGTTTATATAGA.................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000010
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCTT------G--TCTTTGTTTAGTGAA.............................2111.0010000010
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T--TT---GTAA-TGTA-TTGCTT------G--TCTTTGTT....................................2611.0010000001
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAA-TGTA-TTGCTT------G--TCTTTGT.....................................2211.0010000100
.................................................ATACTAGGTAAT------------GC-TA---------------------CGGT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000010
..............................................................................................................................GTTTATATAGAACCTATTACGAAGCGT.................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000100
...................................................ACTAGGTAAT------------GC-TA---------------------CGGTGTCCT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000010
.................................................................................................................................TATATAGAACCTATTACGAAGCGTT----------------------------------------------------------------------------------------------..................................................................................................................................................................................................................................................................................................................2511.0011000000
......................................................................................................................................AGAACCTATTACGAAGCGT.................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000010
.............................................................................................................................................ATTACGAAGCGTT----------------------------------------------------------------------------------------------ATA--TGATA........................................................................................................................................................................................................................................................................................................2111.0010000100
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAGTGAATTTGTTTGTTGT.................2011.0010000010
..........................................................................................................................................CCTATTACGAAGCGTT----------------------------------------------------------------------------------------------ATA--T............................................................................................................................................................................................................................................................................................................2011.0010000010
..................................................................................................................................................GAAGCGTT----------------------------------------------------------------------------------------------ATA--TGATAATACT-G.................................................................................................................................................................................................................................................................................................2211.0011000000
................................................................................................................................TTATATAGAACCTATTACGAAGC...................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000010
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGTTTAGTGAATTTGTTTG.....................2111.0011000000
.......................................................GGTAAT------------GC-TA---------------------CGGTGTCCTT--TCT........................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0011000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTT--TT---GTAA-TGTA-TTGCTT------G--TC..........................................2311.0010000010
.................................................ATACTAGGTAAT------------GC-TA---------------------CGGTGT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000010
...................................................................................................................................TATAGAACCTATTACGAAGCGTT----------------------------------------------------------------------------------------------..................................................................................................................................................................................................................................................................................................................2311.0010000100
...GAGAAAGAGAGA----------------------AAGAGAGA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2050.4020000200
.GAGAGAAAGAGAGA----------------------AAGAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1930.3310000100
...........................................................................................................................................................................................................................................................................................................TATTTACATAT--ATA-------------------------------------------------TAAAT.........................................................................................................................................................................................1940.2511000000
..AGAGAAAGAGAGA----------------------AAGAGA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1960.1710001000
droYak3
-GAGGAAGAGAGGAAGAGAGATTGAGAGGGAGAGAGAGAGAGAGAGG-AATACTAGGTAAT------------GC-TA---------------------CTGTGTCCTT--TCTGTAATTGTAAATGTTTATATAGAACCTATTACGAAGCGTT----------------------------------------------------------------------------------------------ATA--TGATAATACT-GCA------------TAC----------ATATA--TATTTACATAT--ATATA--------------TAT---A---T---------------A------TAAATAT--------------AAATAT------------GATAT----------AT-TTAGCCA-------------CTATATT--------------ACTGATTTTT--TTTT--TT---GTAA-TGTA-TTGCTT------G--TCTTTGTTTAGTGAATTTGTTTGTTGTTAACACT-------TAASizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
..................................................................................................................................ATATAGAACCTATTACGAAGCGTT----------------------------------------------------------------------------------------------..................................................................................................................................................................................................................................................................................................................2415.00500000050000
................................................................................................................................TTATATAGAACCTATTACGAAGCGTT----------------------------------------------------------------------------------------------..................................................................................................................................................................................................................................................................................................................2613.00300000030000
................................................................................................................................TTATATAGAACCTATTACGAAGC...................................................................................................................................................................................................................................................................................................................................................................................................................2313.00303000000000
.................................................................................................................................TATATAGAACCTATTACGAAGCGTT----------------------------------------------------------------------------------------------..................................................................................................................................................................................................................................................................................................................2512.00200000020000
....................................................................................................................................ATAGAACCTATTACGAAGCGTT----------------------------------------------------------------------------------------------..................................................................................................................................................................................................................................................................................................................2212.00200000020000
......................................................................................................................................AGAACCTATTACGAAGCGTT----------------------------------------------------------------------------------------------..................................................................................................................................................................................................................................................................................................................2012.00200010010000
...................GATTGAGAGGGAGAGAGAGA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2012.00200100010000
....................ATTGAGAGGGAGAGAGAGAGA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2112.00200010010000
.............................................................................A---------------------CTGTGTCCTT--TCTGTAATTGTAAATGT..........................................................................................................................................................................................................................................................................................................................................................................................................................................2811.00101000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T--TT---GTAA-TGTA-TTGCTT------G--TCTTTGTTT...................................2711.00101000000000
................................................................................................................................TTATATAGAACCTATTACGAAGCGTT----------------------------------------------------------------------------------------------A.................................................................................................................................................................................................................................................................................................................2711.00100000010000
....................................................................................................................................................................................................................................................................................................................................................................................................................ATAT----------AT-TTAGCCA-------------CTATAT...........................................................................................................1911.00101000000000
.......................................................................................................................................GAACCTATTACGAAGCGTT----------------------------------------------------------------------------------------------..................................................................................................................................................................................................................................................................................................................1911.00100000010000
......................................................................................................................................................................................................................................................................................................................................................................................................T------------GATAT----------AT-TTAGCCA-------------CTATA............................................................................................................2011.00101000000000
.........................................................TAAT------------GC-TA---------------------CTGTGTCCTT--TC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100100000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTTGTTTAGTGAATTTGTT.......................2011.00100100000000
.................................................ATACTAGGTAAT------------GC-TA---------------------CTGT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00101000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAATTTGTTTGTTGTTAACA............2211.00101000000000
....................................................................................................................................ATAGAACCTATTACGAAGCGTT----------------------------------------------------------------------------------------------ATA--T............................................................................................................................................................................................................................................................................................................2611.00101000000000
.........................................................................................................................................................T----------------------------------------------------------------------------------------------ATA--TGATAATACT-GCA------------TAC----------A.....................................................................................................................................................................................................................................................................2111.00101000000000
...............................................................................................................................TTTATATAGAACCTATTACGAAGC...................................................................................................................................................................................................................................................................................................................................................................................................................2411.00101000000000
....................................................................................................................................ATAGAACCTATTACGAAGCGTT----------------------------------------------------------------------------------------------A.................................................................................................................................................................................................................................................................................................................2311.00101000000000
...........GGAAGAGAGATTGAGAGG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00100100000000
.................GAGATTGAGAGGGAGAGAGA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100000010000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAGTGAATTTGTTTGTTGTTAA..............2311.00100000010000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTA-TTGCTT------G--TCTTTGTTTA..................................2111.00101000000000
.................................................ATACTAGGTAAT------------GC-TA---------------------CTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00101000000000
...................GATTGAGAGGGAGAGAGAGAGAGA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00100100000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TT------G--TCTTTGTTTAGTGAATTTGTTT......................2511.00101000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGTTTAGTGAATTTGTTTG.....................2111.00100000100000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T---GTAA-TGTA-TTGCTT------G--TCTTTGT.....................................2311.00100000010000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A-TTGCTT------G--TCTTTGTTTAGTGA..............................2211.00100000010000
........................................................GTAAT------------GC-TA---------------------CTGTGTCCTT--TCT........................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100100000000
.................................................................................................................................TATATAGAACCTATTACGAAGCGTT----------------------------------------------------------------------------------------------ATA--T............................................................................................................................................................................................................................................................................................................2911.00101000000000
...............................................................................................................................................TACGAAGCGTT----------------------------------------------------------------------------------------------ATA--TGATAATACT-GC................................................................................................................................................................................................................................................................................................2611.00100000010000
..........................................AGAGG-AATACTAGGTAAT------------GC-TA---------------------.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00101000000000
...........................................GAGG-AATACTAGGTAAT------------GC-TA---------------------.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00101000000000
...................................................................................................................................................................................................................................................................TACT-GCA------------TAC----------ATATA--TATTTACAT......................................................................................................................................................................................................................................................2411.00101000000000
...............................................................................................................................................TACGAAGCGTT----------------------------------------------------------------------------------------------ATA--TGATA........................................................................................................................................................................................................................................................................................................1911.00101000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T---GTAA-TGTA-TTGCTT------G--TCTTTGTTT...................................2511.00101000000000
..................................................................................................................................ATATAGAACCTATTACGAAGC...................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100100000000
................................................................................................................................................ACGAAGCGTT----------------------------------------------------------------------------------------------ATA--TGATAATACT-GC................................................................................................................................................................................................................................................................................................2511.00100100000000
.................GAGATTGAGAGGGAGAGAGAGAGA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00100000010000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TT---GTAA-TGTA-TTGCTT------G--TCTTT.......................................2211.00101000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTA-TTGCTT------G--TCTTTGTTTAGTGAATT...........................2711.00110000000000
..................................................................................................................................................................................................................................................................................................................................................................................................AATAT------------GATAT----------AT-TTAGCCA-------------CTAT.............................................................................................................2311.00101000000000
....................................................................................................TGTGTCCTT--TCTGTAATTG.................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00101000000000
..........................................................................................................................................................................................................................................................A--TGATAATACT-GCA------------TAC----------ATAT..................................................................................................................................................................................................................................................................2111.00101000000000
.................GAGATTGAGAGGGAGAGAGAGA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100000010000
....................ATTGAGAGGGAGAGAGAGAGAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100000010000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAA-TGTA-TTGCTT------G--TCTTTGTTT...................................2411.00101000000000
........................................................................................................................................AACCTATTACGAAGCGTT----------------------------------------------------------------------------------------------ATA--TGATA........................................................................................................................................................................................................................................................................................................2611.00101000000000
...................................................................................................................................................................................................................................................................................................................................................................................................ATAT------------GATAT----------AT-TTAGCCA-------------CTATATT--------------A...........................................................................................2611.00100100000000
.............................................GG-AATACTAGGTAAT------------GC-TA---------------------CTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100000010000
.....................TTGAGAGGGAGAGAGAGAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00101000000000
....................ATTGAGAGGGAGAGAGAGAGAGA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00100000010000
..............AGAGAGATTGAGAGGGAGA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100000010000
................AGAGATTGAGAGGGAGAGAGAGA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00101000000000
...........................GGGAGAGAGAGAGAGAGAGG-A.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00101000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAGTGAATTTGTTTGTTGTT................2111.00101000000000
...................GATTGAGAGGGAGAGAGAGAGAGAGA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00100000010000
...................................................................................................................................TATAGAACCTATTACGAAGCGTT----------------------------------------------------------------------------------------------..................................................................................................................................................................................................................................................................................................................2311.00101000000000
.................GAGATTGAGAGGGAGAGA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00101000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A-TGTA-TTGCTT------G--TCTTTGTTC...................................2111.00100100000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGATTTTT--TTTT--TT---GTAA-TGTA-TTGCT......................................................2811.00100000010000
........................................................................................................................................AACCTATTACGAAGCGTT----------------------------------------------------------------------------------------------ATA--.............................................................................................................................................................................................................................................................................................................2111.00100000010000
..........AGGAAGAGAGATTGAGAGGGA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100100000000
..............................................G-AATACTAGGTAAT------------GC-TA---------------------CTGT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00101000000000
...........GGAAGAGAGATTGAGAGC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1830.33100100000000
.......................GAGAGGGAGAGAGAGAGA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................18200.05101000000000
........................AGAGGGAGAGAGAGAGAGA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.05100100000000
droEug1
-GAGAGATAGAAAGAGAGAT----GGA----------GAAAGAGAGG-AATACTAGGTAAT------------GC-TA---------------------CGGTGTCCTT--TCTGTAATTGTAAATGTTTATATAGAACCTATTACGAAGCGTT----------------------------------------------------------------------------------------------ATA--TGATAATACT-GCA------------TAC----------ATATA--TATTTACATAT--ATATA--------------TA-------------------------------CATATAT--------------AAATAT------------GATAT----------AT-TTAGCCA-------------CTATATT--------------ACTAATTT----TTTT--TT---GTAA-TGTA-TTGCTT------G--TCTTTGTTTAGTGAATTTGTTTGTTGTTAACACT-------TAASizeHit CountTotal NormTotal
No Reads
droBia1
-ACGGGAGACAGAAAGGGAG----GGAGCGCGAGAGAGGGAGAGGGG-CATACTAGGTAGT------------GC-TA---------------------CCGTGTCCTT--TCTCTAACTGTAAATGTTTATATAGAACCTATTACGAAGCGTTATAATAATACGT-----------------------------------------------------------------------------------TA--TGATAATACT-GCA------------TAC----------ATATA--TATTTACATAT--ATA-------------------------------------------------TACATAT--------------AAATAC------------GATAT----------AT-TTAGCCA-------------CTATATT--------------ACTGATT--------T--TT---GTAA-TGTA-TTGCTT------G--TCT-TGTTTAGTGAATGTGTTTGTTGTTAA--CT-------TAASizeHit CountTotal NormTotal
No Reads
droTak1
-GAGACAAA----------------------------GAGAGAGAGG-AATACTAGGTAAT------------GC-TA---------------------CGGTGTCCTT--TCAGAAATTGTAAATGTTTATATAGAACCTATTACGAAGCGTT----------------------------------------------------------------------------------------------ATA--TGATAATACT-GCA------------TAC----------ATATA--TATTTACATAT--ATATA--------------TA--------T---------------A------TAAATAT--------------AAATAT------------GATAT----------AT-TTAGCCA-------------CTATATT--------------ACTGATTT----TTTT--TT---GTAA-TGTA-TTGCTT------G--TCTTTGTTTAGTGAATTTGTTTGTTGTTAACACT-------TAASizeHit CountTotal NormTotal
No Reads
droEle1
-GACAGAGAGGGAGAGAGAG----A------------GAGAGAGAGG-AATACTAGGTAAA------------GC-TA---------------------ACGTGTCCTT--TCTGTAATTGTAAATGTTTATATAGAACCTATTACGAAGCGTT----------------------------------------------------------------------------------------------ATA--TGATAATACT-GCA------------TAC----------ATATA--TATTTACATAA--ATATA--------------TAT---A---T---------------A------TATATAT--------------AAATAT------------AATAT----------AT-TTAGCCA-------------CTATATT--------------ACTGATTT----TTTT--TT---GTAA-TGTA-TTGCTT------G--TCTTTGTTTAGTGAATTTGTTTGTTGTTAACACT-------TAASizeHit CountTotal NormTotal
No Reads
droRho1
-GAGAGAGAGAAAGA----------------------GAGAGAGAGG-AATACTAGGTAAA------------GC-TA---------------------CGGTGTCCTT--TCTGTAATTGTAAATGTTTATATAGAACCTATTACGAAGCGTT----------------------------------------------------------------------------------------------ATA--TGATAATACT-GCA------------TAC----------ATATATATA-TTACATAT--ATATA--------------TATTT-A---T---------------A------TATATAT--------------AAATAT------------GATAT----------AT-TTAGCCA-------------CTATATT--------------ACTGATTT----TTTT--TT---GTAA-TGTA-TTGCTT------G--TCTTTGTTTAGTGAATTTGTTTGTTGTTAACACT-------TAASizeHit CountTotal NormTotal
No Reads
droFic1
-GAGAGAGAGAGAAA----------------------GAGAGAGAGG-AATACTAGGTAAA------------GC-TA---------------------TGGTGTCCTT--TCTGTAATTGTAAATGTTTATATAGAACCTATTACGAAGCGTT----------------------------------------------------------------------------------------------ATA--TGATAATACT-GCA------------TAC----------ATATA--TATTTACATAT--ATA-------------------------------------------------TATATAT--------------AAATAT------------GATAT----------AT-TTAGCCA-------------CTATATT--------------ACTGATTT----TTTT--TT---GTAA-TGTA-TTGCTT------G--TCTTTGTTTAGTGAATTTGTTTGTTGTTAACACT-------TAASizeHit CountTotal NormTotal
No Reads
droKik1
-CAAGGAGA------------------------------------TG-AGCTCTAGGAAGA------------TCAAA---------------------CGGTGTCCTT--TCTGTAATTGTAAATGTTTATATAGAACCTATTACGAAGCGTT----------------------------------------------------------------------------------------------ATA--TGATAATACTTGCA------------TAC----------ACATATATATTTACATAT--ATATA--------------TAT---AC--T---------------A------TATATAT--------------AAATAT------------GATAT----------AT-TTAGCCA------------ACTATATT-----ACAGAT---ATT-ACTT----TTTT--TT---TTAA-CGTA-TTGCTT------GTGTCTTTGTTTAGTGAACTTGTTTGTTGTTAACATT-------TAASizeHit CountTotal NormTotal
No Reads
droAna3
-GAGAGAGAGAGAGACAGGG----AGTGCGACAGGGAGAGAGACAGGAAATACTAGGCGAA------------G--------AAACCGACGGCGCTAGACGGTGTCCTT--TCTGTAATTGTAAATGTTTATATAGAACCTATTACGAAGCGTT----------------------------------------------------------------------------------------------ATA--TGATAATACTTGCA------------TAC----------ATATA--TATTTACATAT--ATATA--------------T---------------------------------ATATATA-------------AAATAT------------GATAT----------ACATTAGCCA-------------CTATATT--------------ACTGACTTTT--TTTTTTTTTGTGTAATTGTA-CTGCTTTGTACGG--TCTTTGTTTAGTGAATTTGTTTGTTGTTTAAACTAAACATATAASizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
.....................................GAGAGACAGGAAATACTAGGCGAA------------G--------A.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2614.004100003
.............GACAGGG----AGTGCGACAGGGAGAGA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2413.003100020
.........................................GACAGGAAATACTAGGCGA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1912.002011000
........................AGTGCGACAGGGAGAGAGACA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2112.002000002
.............................GACAGGGAGAGAGACAGGA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1912.002100100
..............................................................................................................................GTTTATATAGAACCTATTACGAAGCGTT----------------------------------------------------------------------------------------------..................................................................................................................................................................................................................................................................................................................2812.002000020
................................................................................................................................TTATATAGAACCTATTACGAAGCGTT----------------------------------------------------------------------------------------------..................................................................................................................................................................................................................................................................................................................2612.002000020
.....................................................TAGGCGAA------------G--------AAACCGACGGCGCT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2312.002100001
...GAGAGAGAGAGACAGGG----AGTGC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001000010
..................................................................................................................................ATATAGAACCTATTACGAAGCGTT----------------------------------------------------------------------------------------------..................................................................................................................................................................................................................................................................................................................2411.001000010
...............CAGGG----AGTGCGACAGGGAGA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000001
.....................................................................................................................................................................................................................................................................................................................................................................................................AT------------GATAT----------ACATTAGCCA-------------CT...............................................................................................................1911.001100000
............................................................................................................T--TCTGTAATTGTAAATGTT.........................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001000001
......................................AGAGACAGGAAATACTAGG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001010000
.................GGG----AGTGCGACAGGGAGAGA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001100000
................................................AATACTAGGCGAA------------G--------AAACCGACGGC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001100000
.........GAGAGACAGGG----AGTGCGACA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001100000
.............GACAGGG----AGTGCGACAGGGA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001100000
................................................................................................................................................ACGAAGCGTT----------------------------------------------------------------------------------------------ATA--TGATAATACT...................................................................................................................................................................................................................................................................................................2311.001000001
...................................................................................................................................................AAGCGTT----------------------------------------------------------------------------------------------ATA--TGATAATACT...................................................................................................................................................................................................................................................................................................2011.001000001
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TA-CTGCTTTGTACGG--TCTTT.......................................2011.001010000
.........................................................................................................................................................T----------------------------------------------------------------------------------------------ATA--TGATAATACTTGCA------------TAC----------AT....................................................................................................................................................................................................................................................................2311.001010000
...........GAGACAGGG----AGTGCGACAGGGA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001000010
..........................................................GAA------------G--------AAACCGACGGCGCTAGAC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001010000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTACGG--TCTTTGTTTAGT................................1911.001000010
...............................................................................................................................................................................................................................................................ATAATACTTGCA------------TAC----------ATATA--T..............................................................................................................................................................................................................................................................2111.001010000
...................................................................................AACCGACGGCGCTAGACGGTGTCCT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001000010
......................................................AGGCGAA------------G--------AAACCGACGGCGC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001010000
....................................................................................ACCGACGGCGCTAGACGGTGTCCT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001000010
...................................................................................AACCGACGGCGCTAGACGGTGTC................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001010000
............................................................................................................................................TATTACGAAGCGTT----------------------------------------------------------------------------------------------ATA--TGATAATACTT..................................................................................................................................................................................................................................................................................................2811.001000001
..............ACAGGG----AGTGCGACAGGGAGAGA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001100000
........................................................................................................................................................................................................................................................ATA--TGATAATACTTGCA------------TAC----------A.....................................................................................................................................................................................................................................................................2111.001100000
...................................................................................................................................TATAGAACCTATTACGAAGCGTT----------------------------------------------------------------------------------------------..................................................................................................................................................................................................................................................................................................................2311.001000010
..................GG----AGTGCGACAGGGAGAGAGACA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001100000
.......................................................................................GACGGCGCTAGACGGTGT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001000010
.....GAGAGAGAGACAGGG----AGTGCGAC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001010000
..............................................................................................................................GTTTATATAGAACCTATTACGAAGC...................................................................................................................................................................................................................................................................................................................................................................................................................2511.001100000
.......................................................................................................................................................GTT----------------------------------------------------------------------------------------------ATA--TGATAATACTTGC................................................................................................................................................................................................................................................................................................1911.001100000
.................................................ATACTAGGCGAA------------G--------AAACCGACGGCGCT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.001100000
...................................................................................AACCGACGGCGCTAGACGGT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000010
.......................................GAGACAGGAAATACTAGGCGAA------------G--------A.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001000010
...................G----AGTGCGACAGGGAGAGAGACAGGAA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001000001
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGTTTAGTGAATTTGTTTGTT...................2211.001010000
droBip1
-GAGAGAGAGAGAGA----------------------------TAGGAAATACTAGGCGAAGATGAACCCTAC-----GAGGAACCCTACGGCGCTAGATGGTGTCCTT--TCTGTAATTGTAAATGTTTATATAGAACCTATTACGAAGCGTT----------------------------------------------------------------------------------------------ATA--TGATAATACTTGCA------------TAC----------ATATATATATTTAC-TATATATATA-TAT--------A-TATCTATA--TCT------ATA-TATA------TATATATA-------------AAATAT------------GATAT----------ACATTAGCCA-------------CTATATA----------TATTACTGACTTTTTTTTTT--TT---GTAA-TCTACTTGCTTTGTACTG--TCTTTGTTTAGTGAATTTGTTTGTTGTTAAA-----------AASizeHit CountTotal NormTotal
No Reads
dp5
-AAAAAAGAAATAAATAAA-------------------------AAA-AATACTAAAAAA------------------GAGGAAATCACCCCCGCCGG-TGGTGTCCATCCTCTATAATTGTAAATGTTTATATAGAACCTATTATGAAGCGTT----------------------------------------------------------------------------------------------ATA--TGATAATACTTGCA------------TACACACACACACAGACACAA-C--------ACACACA-CACACA--CACAAAC-AAACACACAT------ATATTATATATATATAAA-----------------AAACAT-ACATAT-----AT--T----------AT-TTAGCCA-------------CTATATA--------------ATTACGTTAT--TTTT--TT-----------A-TTA-TT------G--TCTTCGCTTAGTAAATTTGTTC-----TAAGATT-------TAASizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
....................................................................................................................................ATAGAACCTATTATGAAGC...................................................................................................................................................................................................................................................................................................................................................................................................................1913.0030200100000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T--TTTT--TT-----------A-TTA-TT------G--TCTTCGCTTAG.................................2512.0020000000200
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TA-TT------G--TCTTCGCTTAGTAAATTTGTTC-----.................2712.0020000000200
.................................................................................................................................................TGAAGCGTT----------------------------------------------------------------------------------------------ATA--TGATAATACT...................................................................................................................................................................................................................................................................................................2211.0010000010000
........................................................................................................................................................TT----------------------------------------------------------------------------------------------ATA--TGATAATACTTGCA------------TACACACACA.........................................................................................................................................................................................................................................................................2911.0010100000000
...........................................................A------------------GAGGAAATCACCCCCGCCGG-.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010100000000
.....................................................................................TCACCCCCGCCGG-TGGTGTCCATC............................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010001000000
.....................................................................................................................................TAGAACCTATTATGAAGCGTT----------------------------------------------------------------------------------------------..................................................................................................................................................................................................................................................................................................................2111.0010000100000
..........................................................................................................................................................................................................................................................................................................................ACA-CACACA--CACAAAC-AAACACACAT------AT..........................................................................................................................................................................................................2811.0010100000000
.........................................................................................................................................................T----------------------------------------------------------------------------------------------ATA--TGATAATACTTGCA------------TACACACAC..........................................................................................................................................................................................................................................................................2711.0010100000000
................................................................................GGAAATCACCCCCGCCGG-TGGTGTCC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000010000
...........................................................A------------------GAGGAAATCACCCCCGCCGG-TGGTGTC................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010001000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGTTAT--TTTT--TT-----------A-TTA-TT------G--TCTT........................................2311.0010000000010
.......................................................................................................GTCCATCCTCTATAATTGTAAATGTTTAT......................................................................................................................................................................................................................................................................................................................................................................................................................................2911.0010100000000
..................................................................................................................................ATATAGAACCTATTATGAAGCGTT----------------------------------------------------------------------------------------------..................................................................................................................................................................................................................................................................................................................2411.0010000100000
.........................................................................................CCCCGCCGG-TGGTGTCCATCCC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010010000000
...........................................................................................................................................CTATTATGAAGCGTT----------------------------------------------------------------------------------------------ATA--TGAT.........................................................................................................................................................................................................................................................................................................2211.0010000001000
.......................................................................................ACCCCCGCCGG-TGGTGTCCATC............................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010100000000
...........................................................A------------------GAGGAAATCACCCCCGCC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010100000000
.........................................................................................................................................................................................................................................................................................................................................................................................................CATAT-----AT--T----------AT-TTAGCCA-------------CTATATA--------------ATTA........................................................................................2811.0010001000000
.....................................................TAAAAAA------------------GAGGAAATCACCCCCGCCG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000001000
.................................................................................................................................................................................................................................................................................................CACAGACACAA-C--------ACACACA-CACACA--CA..................................................................................................................................................................................................................................2711.0010100000000
.......................................................................................ACCCCCGCCGG-TGGTGTCCATCCT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010100000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A-TT------G--TCTTCGCTTAGTAAATTTGTT.......................2511.0010100000000
.................................................................................................................................................................................................................................................................AATACTTGCA------------TACACACACACACA.....................................................................................................................................................................................................................................................................2411.0010100000000
droPer2
-AAAACAAACAAAAAATAAA----TA----------------AAAAA-AATACTAAAAAA------------------GAGGAAAACACCCCCGCCGG-AGGTGTCCTTCCTCTACAATTGTAAATGTTTATATAGAACCTATTATGAAGCGTT----------------------------------------------------------------------------------------------ATA--TGATAATACTTGCATACACACACACACAC----------AGACACAA-CACACACAC--AC---------------AAAC-AAACA--CAT------ATATTATATATATATAAACAT--------------ACATAT------------AT--T----------AT-TTAGCCA-------------CTATATA--------------ATTACGTTA---TTTT--TT-----------A-TTA-TT------G--TCTTCGCTTAGTAAATTTTTT-----CTAAGATT-------TAASizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
..................................................................................................................................ATATAGAACCTATTATGAAGC...................................................................................................................................................................................................................................................................................................................................................................................................................2113.003201000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A---TTTT--TT-----------A-TTA-TT------G--TCTTCGCT....................................2212.002200000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAAATTTTTT-----CTAAGAT...........1812.002200000
.....................................................................................................................................TAGAACCTATTATGAAGCGTT----------------------------------------------------------------------------------------------..................................................................................................................................................................................................................................................................................................................2111.001000100
.................................................................................................................TACAATTGTAAATGTTTATA.....................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001010000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TT-----------A-TTA-TT------G--TCTTCGCTTAGT................................2111.001010000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TT-----------A-TTA-TT------G--TCTTCGCTTA..................................1911.001001000
.................................................................................................................................TATATAGAACCTATTATGAAGCGTT----------------------------------------------------------------------------------------------..................................................................................................................................................................................................................................................................................................................2511.001000001
......................................................................................................................................AGAACCTATTATGAAGCGTT----------------------------------------------------------------------------------------------..................................................................................................................................................................................................................................................................................................................2011.001000001
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TT-----------A-TTA-TT------G--TCTTCGCTT...................................1811.001100000
............................................................................................................TCCTCTACAATTGTAAATGTTTAT......................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001010000
....................................................................................................................................ATAGAACCTATTATGAAGCGTT----------------------------------------------------------------------------------------------ATA--T............................................................................................................................................................................................................................................................................................................2611.001000001
...................................................................................................................................................................................................................................................................................CACACAC----------AGACACAA-CACA.........................................................................................................................................................................................................................................................1920.501010000
droWil2
-GAGAGAGAGAGAGAGAGAG----AGATAGAGTGAGAGGGGGAGAAA-AATGATAGTTAAT------------GA----------------------------------------TAGTTAAAGATGATGGCATGATAGTTAATAAAAGAATCG----------------------------------------------------------------------------------------------AGC--AGACAATACA-ATA------------TAC----------ATAAA--TATATACATAT--ATGAA--------------GATTT-T---C---------------T------TATATAT--------------AAATAC-----------CTAAAA----------AC-GCAGCCTCTAAATTAAGCTATAAAATTATATAAA-------ATAAAT---------------------------TTTCTT------T--TTTTTATTTAGT--------------------------------SizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
.....GAGAGAGAGAGAGAG----AGAT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.05100100
droVir3
-GAGAGAGAGAGAGAGAGAG----AGAGAGAGAGAGAGAGACAGAGG-GA-----GCAAGT------------GC-AA---------------------TTATGTTTC------------ATATGAGTTCATTTAAATCACAATCAAAATGAATATAATAATACTT-----------------------------------------------------------------------------------AA--TAAAATAAGT-GTT------------A------------AGATATAAA---------CTAAGTA-TAATTAATATTAAGT-ATTACTATTA------ATAT----------TAAATAC--------------ACATAT----------------------------------------------------------------------------------------------GAAA-TG---TTTCTA------T--TATTTTTTTATTTAATTT--------------------------SizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
..............AGAGAG----AGAGAGAGAGAGAGAGACA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.051000000000000000000000000000000000000000000000000000000000000001
droMoj3
-GAGAGAGAGAGAGAGAGAG----AGAGAGAGAGAGAGAGATAGAGA-ACTAAAAGTTATA------------AA-AG---------------------AGACAACATA--GTTAAA--------------------------------------------------------------------------------------------------------------------------------------------------------------------A----------AAATA--TACTTATATAT--ATAACCAAACTATTTTTAAGT-ATAATC--TAATGGTGAAA-TGAATATG--TATATCCGAGCTACACTGTAGAGAAAAGAAAAGTTCTC-TC--TGCTCTCTCACTC-CTAGCTA-------------CTATACT-------------------------------------------ATG-CAGCTT------T--ATGGCATTTGGTTAATTTATTTGTTGTTCACATA-------TATSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
....................................AGAGATAGAGA-ACTAAAAGTTATA------------AA-AG---------------------.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.001100000
droGri2
-GAAAGAGAGAGAGAGCGGG----AGAGGGAGAGAGACAGAGAGAGA-GAG-----------------------A----------------------------------------GAGTTAAAGAGATCGGGTGGGTGAAGAGCTGCAGAGCTG------------AAAAGCCAAAATAAACATGAGAAGTACACCTTTTTGGGAGGAAAATTCATTGCATTTGGAAAAGAAATTATGAAAAAAAGATATGTCTAAAAATACTCGCA------------TAC----------AGACAGAG-TTTAAATAT--ATT-G--------------TA-------------------------------CA-GAAT--------------ATATAT------------AGTAT----------AT-TTAA--A-------------ATATATA--------------ACAATTTA-T--TTTA--TA---ACAT-TGTA-TTTCTT------A--CGCACGTTTTGTATTTTTGCTTTATATT----------------SizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads

Generated: 05/19/2015 at 12:07 AM