dsi_5218

Name	Class	Family	Strand
(CAG)n	Simple_repeat	Simple_repeat	+
(CAG)n	Simple_repeat	Simple_repeat	+

########################################################################################################################################################################################################### GAAGGCTGCAACGCCAGCAGCAGCAGCAGCAGCAGCCGCCGCACCAGCAGGCTATGCGGTCGTCGAGAGAGAATATCTAAAGATAAGACAGTATCCGTCGCCGAAACGTAACTGCAACGCCAGCAGCAGCAGCAGCAGCAGCCGCCGCACCAGCAGCAGCAGCAGCAACAGAAGCTGTTACGGCTTTGTCTGAGAGCAATGTG ************************************************....((((((((.(((..((.....(((.......))).....))..))).))).......((((.......))))..((.((....)).))..)))))....************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR618934 dsim w501 ovaries	SRR553488 RT_0-2 hours eggs	M023 head	M053 female body
...................................................................................TTAGACATTATCCGTCTCCG....................................................................................................	20	3	4	0.25	1	1	0	0	0
.....................................................................................................................................................................................GGCCTTGTCTGAGAGCT.....	17	2	4	0.25	1	0	1	0	0
...................................................................................................................................................CACCAGCAGCAGCAGC........................................	16	0	20	0.15	3	3	0	0	0
.............................................................................................................................................................AGCAGCAGCAACAGA...............................	15	0	20	0.10	2	2	0	0	0
......................................................................................................................................................CAGCAGCAGCAGCAGCAAC..................................	19	0	20	0.05	1	0	0	0	1
............................................................................................................................................................CAGCAGCAGCAACAGA...............................	16	0	20	0.05	1	1	0	0	0
.........................................................GGTAGTCGAGAGAGTATC................................................................................................................................	18	3	20	0.05	1	0	0	1	0

CTTCCGACGTTGCGGTCGTCGTCGTCGTCGTCGTCGGCGGCGTGGTCGTCCGATACGCCAGCAGCTCTCTCTTATAGATTTCTATTCTGTCATAGGCAGCGGCTTTGCATTGACGTTGCGGTCGTCGTCGTCGTCGTCGTCGGCGGCGTGGTCGTCGTCGTCGTCGTTGTCTTCGACAATGCCGAAACAGACTCTCGTTACAC ************************************************....((((((((.(((..((.....(((.......))).....))..))).))).......((((.......))))..((.((....)).))..)))))....************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR553486 Makindu_3 day-old ovaries	M024 male body	SRR618934 dsim w501 ovaries
................................................................................................CAGCAGCTTTGCATTGAC.........................................................................................	18	1	3	0.33	1	0	1	0
............................................................ACAGGTCTCGCTTATAGATTT..........................................................................................................................	21	3	4	0.25	1	1	0	0
.............................................................................................AGGCAGCGGATTTGC...............................................................................................	15	1	4	0.25	1	1	0	0
...........................................................................................ATAGGCAGCGGCGTCACAT.............................................................................................	19	3	6	0.17	1	1	0	0
..............................................................................................GGCGGCGGCGTTCCATTGAC.........................................................................................	20	3	8	0.13	1	0	0	1
........................................................................................................................................................CGTCGTCTTCGTCGTTGTCTT..............................	21	1	20	0.05	1	1	0	0

Species	Coordinate	ID	Alignment
droSim2	x:11698815-11699017 +	dsi_5218	GAAGG-CTGCAACG------------C---CA---GC------AGCA------------GCAGCA---------------GCAGCAGCC---------GCCG---CACCAG--------------------------CAGGCTATGCGGTCG---------------------------TCG-AGA----GAGA--------------ATATCT--------AA--------------------------AGATA---AGA----------------------CAGTATCCGTC-------------------------------------------------------------GCC-----------------GAAACGT------------------A-A---CTGCAACGCCA---------G---------CAGCAGCAGCAGCAGC---------------AGCCGCCGCACCAGCAGCA------------GCAGCAGCAACAGAAG------------------CTGTTA---CGG---CT----------TTGTC----------------------------TGAGAGCAATGTG
droSec2	scaffold_6:1811258-1811473 -		GAGAC-CCGCAGAT------------ACAACA---GC------AGCA------------GC---AAC---A---------GCAACAGCA---------G------CAACAT---CAGC-----TGCATG--------CAGC-----------AACATCAA-------------------------------------T-----A--------ACC------AGCAG--------------------C----------------------------------CA-----------GCG---------------------------------------------GAAGCAGGCAGAATCAAATTTATCAACGTCGCATCTAGGT------------------A-A---A---GGCAGCA---------GCAG------GA---GCAGCAGCAGC---------------AGGAGCCGCAGCAGCAGCA------------GCAACATCAACAGCAA------------------GAGTAA---CAA---TGGCA---AACA---G---C---C-------------------------AGCAAAG-T
dm3	chr3R:9612933-9613132 +		TG-------CAACTCT------TGCAC---CG---GC------A---------------GC---AGC---A---------G---CGTCA---------GCAG---CAACAG---CAAC-----CACTTG--GAG---CAGC-----------AA-------------------------------------------------------------------------------------------------A---CGACAGAAATGATCTTAAATGAATGCGG-----------AAGTTTT----TCTT----------------------------------------------GGG-----------------GTTTCGTAA------------------C---CAGCTACAGCA---------G---------CAGCAGCAACTACAGC---------------AACTGCCGCAGCAGCAGCA------------GCAACACCAA-AGAGG------------------TCGCAA---TTC---CA----------GTGGC--------------------------------AGCAATGTT
droEre2	scaffold_4690:14243333-14243517 +		GGTG--GCGCACCT---------------------GC------AGCAGCAGCAGCAGCAGC---AGC---------------------A---------GCTG---GACCAG------CGCAACAACCTG--CAT---CAGC-----------AA-------------------------ATC-CAT------------------------------------------------------------CACCACCAC---CAA-------------------------------------------------------------------CA------------------------------------------------------------------------------GCAGCAGCA---GCAACAGCAG------CA---GCAGCAACAGC---------------AGCAGCAGCAGCAGCAGCA------------GCAACAGAAACAGCAG------------------CAGCAG---CAGCAGCA----------TATGCAGC---A-------------------------A-CCATTTT
droYak3	X:11898670-11898866 +		TGGTC-CCGCAGCAG------CA---G---C------------AGCA---------ACAAC---AGC---A---------G---CAGCA---------ACAG---CAGCAGGCGCA-------------------------------------A-------------------CAGTTGCCG-CCGGGCGTTGGA--------G-TT-GCCAGCCC-----------------------------------G---C----------------------------------------------------------------------------------------------------------------------------------------------------------TGCAGCA---------G---------CAGCAGCAACAGCAGCAGCAGCAACAACAGCAGCAGCAGCAACAGCAACA------------GCAGCAGCAGCA---------------------------------G---CA----------------GC---TGATCAACAACGGAGGCGTCTCCGCCGGCACACCC
droEug1	scf7180000409470:135971-136175 +		CA---------GCAG------CA---A---CA---GC------AG------------CAGC---AGCAGTCCGGTGATTCA---CAGCA---------ATAG---CAGTGCCAACA--------A--------------------------------------TATGCTGCAACAGTTGTCG-CAA----CAGA--------------ATGTCACGGTGACGGCA---------------------CA------------------------------------------------------------------------------------------------------------------CCAC----------------AG------------------C---CAGCAACAGCAGCAGCAACAACAG------CAGTTGCAACAGCAGC---------------A---CCACAGCCACCACCA------------GCAGCAGCAACAGCAG------------------CAGCAA---CAT---CT------CCTG-------------------------------------TCCAGTGTG
droBia1	scf7180000302075:131815-131998 +		--------GCAGCAAC------A---A---CA---GC------AGCA------------GC---AGC---A---------GCAACACAC---------GTTG---CATCAG--------------------------CAGCG---GGGA--------------------------------------------C-CCTTTAT-------------------------------------------------------------------------AGAGGGCA-----------ATGATGTG----C------------------------------------------------CCG-ATCCCTC----------------AGCCACCTAC--------CAC---TCGGAACACCA---------G---------CAACAGCAGCAGCAGC---------------AG---GCCGACGAGCGACA------------GCAGCAATATGAGCAG------------------ATGCGA---TAT---GC------CCAG-------------------------------------AGCCATGTG
droTak1	scf7180000415220:65259-65439 -		AACGG-TTACC-TCGCTGCAGCA---G---C------------AGCA---------ACAAC---AGCAGGC---------G---CAGCA---------GCAACAGCAGCAG---CA-------------------------------------A-------------------CAGAGAATG-CAG-------------------ATGATCAACCA-----------------------------------G---CAGCAGA-------------------------------T-------------------------------------------------------------GCT-----------------G------AA------------------C---CACCAACAGCT---------G---------CAACAGCAGCAGCAGC---------------AACTCGCCCAACAGCAGCA------------GCAGCAGCAAGGGCAG------------------CAGCAG---CAA---CA---------G-------------------------------------GGCAA---T
droEle1	scf7180000490996:1013995-1014197 +		--------GCTGCAAC------A---G---C------------AATT---------GCAAC---AGC---A---------A---CAGCA---------ACAG---CAGCAGCAGCAAC-----------------------------CATCG---------------------------------------------CCCAT-GTTGGGCAGACCA-----------------------------------G---CGGCAGCCACGCCCACAGAT--ATGCAG-----------CGTTATG----TGCAGAGGATGCA------------------------------------------------------------------------------------A---CAACAACAGCA---------G---------CAACAGCAGCAACAGC---------------AG------CAACAGCAGCA------------GCAGCAGCAACAGGAG------------------CTGTACCGCCAG---CA----------ACAGC--------------------------------AGCAACATC
droRho1	scf7180000780277:36668-36863 -		CAAGCGCTGCAGTC---------------------GCAGCAGCAGCA------GCAGCAGC---AGC---T---------G---CAGTA---------GCAG---CAGCAG--------------------------CAGC-----------AACGCT------------------------------------AG-C-----G---------------TCGGCAG--------------------CGACGG---CAGCAG-------------------------------------CATG----T------------------------------------------------CCAAAACAAGCA-----------------GCGGTAATCCAAGTGCA-G---CAGCAACACAA---------G---------CAGCAGCAGCAGCAGC---------------AGCGG------------CT------------GCAGCAGCAGCA------------------------GCAA---GTGCAACA----------AATGCC-------------------------------GCCAATGCC
droFic1	scf7180000453901:487801-487990 -		--------GCAACAGC------A---G---C------------AGCA---------GCAAC---AGC---A---------A---CACAC---------GCTG---CACCAG--------------------------CAGCG---AGGA--------------------------------------------C-CCTTCAT-------------------------------------------------------------------------CGAGGGCA-----------ACGACGTC----T------------------------------------------------CCG-ATCCCTC----------------GACCACTTAT--------CACTCGG---AGCACCA---------GCAG------CA---GCAGCAGCAGC---------------AGCAGGCGGACGAGCGGCA------------GCAGCAGTACGAACAG------------------ATGCGG---CAG---CAGTACGCCCAG-------------------------------------AGCCACGTG
droKik1	scf7180000301874:35960-36146 -		--------GCAGCAGC------A---G---C------------AGCA---------ACAGC---AGCAGCA---------G---CAGCA---------ACAACAGCAGCAG---CATC-----------TGATG---GA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCAACAGCATCTGCACCAACAGCAGCGATTGCAGACG------------------------------------------------------C---ATCAGCA---------GCAA------TA---CCAGCAGCAAC---------------AGTATGCC------ATGCCGCATCAGCAACAGCAGCAGCAGCA---------------------------------G---CA----------------GAGGGTGGTCAGTGATTTTGC------AGAGAG------C
droAna3	scaffold_13117:5219657-5219860 -		--------GCAGCAAC------T---C---CA---GC------AGCA------------GC---AGC---A---------GCCACAGCA---------ACAG---CAACAGCAGCAGC------------------------CACACCATCA-A-------------------------CAG-CAG-------------------CAGACATCCCA-----------------------------------G---CAACAGC-------------------------------AGCAGCATCAAGCACA------ACAACAACATCAGCAG---CAGCA------------GCA-ATC-----------------------------------------------------------------------------------ACAACA------------------------ACATAAGCAGCAACA------------GCAGCAGCACCAGCAGCAGCAACATCTTCAGCAGAAGCAG---CA---ACA----------GCAGCA-------------------------------------GCA
droBip1	scf7180000396589:2061696-2061878 -		--------GCAACAGC------A---G---C------------AGAT---------GCAGC---AGC---A---------A---CAGCC---------ACCG---CAGCAG--------------------------CATA---CACCCTCG---------------------------------------------C-----C---------------ACGACAA--------------------TCCCCATTGCAGCAGC-------------------CA-----------ACGACACCAA------------------------------C-------CT--------------------------------------------------------T-G---CAACAACAGCA---------G---------CAGCAGCAACAGCAGC---------------AACAGCCACCC---CTTCA---------------------------G------------------CAGCAG---CAACAACA----------AGC--------TCCTCAAGTATGTGGC------A--GGTTAATACT
dp5	Unknown_singleton_1849:5278-5462 +		CA---------ACAG------CAGCAA---CA---AC------AGAA------------------GC---A---------G---CAGCA---ACAGCAGCAG---CAGCAG------C-----------AGGTGCAGCAGC-----------AACATC------------------------------------AG-C-----A---------------ACAGCAA--------------------CATCAGCAG---CAA-------------------------------------------------------------------CA---------------------GCA-GCA--------------------------------------------A---A---------A---G------CAA------CA---TCAGCAGCAAC---------AGCAGCAGCAGCAGCAACAACAGCA------------ACAACAGCAACATCAG------------------CAACAA---CAA---CA----------GCTGCAGC---C-------------------------CCCACCAAG
droPer2	scaffold_4:6701439-6701638 +		CA---------GCAG------CA---ACAACA---GC------AGCA------------ACATCA---------------ACTGCAGCA---------GCAG---CATCAG--------------------------CAGC-----------AGCAA----------------CAGCAGCTG-CAG----CAGAA---------------------GCAGCAAC--------------------------AGCAA---CAA----------------------CAGCAGCAGCA-------------------------------------------------------------ACATAAACATCA-----------------------------------A---C---------A---G------CAACAACAGCAGCAGCAACAGCAGC---------------A---GCAGCAACAACAGCA------------GCAGCAACAACAGCAG------------------CAGCAA---CAA---CA----------GCAGCAGC---A-------------------------GACAGCGAA
droWil2	scf2_1100000004521:247385-247567 +		CA---------GCAG------CA---G---C------------AACA---------ACAAC---AGCAG-----------G---CAGCA---------GCCG---CAGCAGCAGCAGC-----------CGCT------------GCCGCCG-CCAGCAA---T--------------------------------------------ACTTCCCA-----------------------------------G---CAGCAGC------------------CAA-----------ACGATGTCTA----------------------------------------------------------CCTC----------------AG------------------C---CAACAACAGCA---------G---------CAGCAGCAACAGCAGC---------------AA------CAACAACAGCA------------GCAACAACAACAACAG------------------TTGGCC---TTCCAACAGCA---ATTG-------------------------------------------GCC
droVir3	scaffold_13052:1898201-1898385 -		CA---------ACAG------CA---A---CAGCAAC------AGCC------------------GC------------------AGCAGCAGCAGCAGCAG---CAGCAG--------------------------CA--------------GCAGCAGTAATTA------------GCTG-CAG----CAGCA---------------------GCAGCAGC--------------------------AGCAG---CAG-------------------------------------TAA--------------------TTAGCTG------------------------------------------------------------------------------C---AGCAGCA---------GCAG------CC---GCAGCAGCAGC---------------AGCAGCCGCAGCAGCAGCA------------GCAGCCGCAGCAGCAG------------------CAGCAG---CAG---TAGTA---ATTAGCTGCA-------------------------------------GCA
droMoj3	scaffold_6328:1560888-1561106 +		--------GCAGCAAC------A---A---CA---AC------AGCA------------GC---AGC---A---------GCTTTGATA---------GCAG---CAACAG--------------------------CAGCAAAAGATTTCG---------------------------TCTTAGA----GCGA-CTTTTGTCA----GTGTCA------AAGCAGCTTAGATAGTTTGCCTGTTGCAC-AA---CAACAGA------------------------------------------------------------------CA------------------------------------------------------------------------------CAAGCAGCA---GCAACAGCAG------CA---GCAACAACAGC---------------AGCAGCAGCAACAGCAGCA------------GCAGCAACAACAGCAG------------------CTGTTG---CTT---TAGTC-------AGCAC--------------------------------AGCAATGGA
droGri2	scaffold_3013:4109-4292 -		--------GCGGCAGC------A---G---C------------AGCA---------GCAGC---AGC---G---------G---CAGCA---------GCAG---CAGCAGCAGCAGC-----------TCTG------------GTCAGC-AGCAGCAG----------------CAGCTG-CAG----CAGCA---------------------GCAGCAGC--------------------------AGCGG---CAG----------------------------------------------------------------CAGCAG---------------------------------------------------------------------------C---AGCAGCA---------GCGG------CA---GCAGCAGCAGC---------------AGCAG---CGGCAGCAGCAGCAGCGGC---AGCAGCAGCAGCA------------------------GCAG---CAGCAGCA----------GCAGCA-------------------------------------GCG

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droSim2

GAAGG-CTGCAACG------------C---CA---GC------AGCA------------GCAGCA---------------GCAGCAGCC---------GCCG---CACCAG--------------------------CAGGCTATGCGGTCG---------------------------TCG-AGA----GAGA--------------ATATCT--------AA--------------------------AGATA---AGA----------------------CAGTATCCGTC-------------------------------------------------------------GCC-----------------GAAACGT------------------A-A---CTGCAACGCCA---------G---------CAGCAGCAGCAGCAGC---------------AGCCGCCGCACCAGCAGCA------------GCAGCAGCAACAGAAG------------------CTGTTA---CGG---CT----------TTGTC----------------------------TGAGAGCAATGTG	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACCAGCAGCA------------GCAGC......................................................................................................	16	20	0.15	3	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A------------GCAGCAGCAACAGA.............................................................................................	15	20	0.10	2	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCAGCA------------GCAGCAGCAAC................................................................................................	19	20	0.05	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CA------------GCAGCAGCAACAGA.............................................................................................	16	20	0.05	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0

droSec2

GAGAC-CCGCAGAT------------ACAACA---GC------AGCA------------GC---AAC---A---------GCAACAGCA---------G------CAACAT---CAGC-----TGCATG--------CAGC-----------AACATCAA-------------------------------------T-----A--------ACC------AGCAG--------------------C----------------------------------CA-----------GCG---------------------------------------------GAAGCAGGCAGAATCAAATTTATCAACGTCGCATCTAGGT------------------A-A---A---GGCAGCA---------GCAG------GA---GCAGCAGCAGC---------------AGGAGCCGCAGCAGCAGCA------------GCAACATCAACAGCAA------------------GAGTAA---CAA---TGGCA---AACA---G---C---C-------------------------AGCAAAG-T	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
.............................ACA---GC------AGCA------------GC---AAC---A---------GCAACAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	12	0.08	1	0	0	1	0
.............................ACA---GC------AGCA------------GC---AAC---A---------GCA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	20	0.05	1	0	0	1	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................CA---------GCAG------GA---GCAGCAGCAGC---------------..........................................................................................................................................	19	20	0.05	1	0	0	1	0

dm3

TG-------CAACTCT------TGCAC---CG---GC------A---------------GC---AGC---A---------G---CGTCA---------GCAG---CAACAG---CAAC-----CACTTG--GAG---CAGC-----------AA-------------------------------------------------------------------------------------------------A---CGACAGAAATGATCTTAAATGAATGCGG-----------AAGTTTT----TCTT----------------------------------------------GGG-----------------GTTTCGTAA------------------C---CAGCTACAGCA---------G---------CAGCAGCAACTACAGC---------------AACTGCCGCAGCAGCAGCA------------GCAACACCAA-AGAGG------------------TCGCAA---TTC---CA----------GTGGC--------------------------------AGCAATGTT	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
....................................C------A---------------GC---AGC---A---------G---CGTCA---------GCAG---CAAC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	7.00	7	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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...........................................A---------------GC---AGC---A---------G---CGTCA---------GCAG---CAA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................A---------G---CGTCA---------GCAG---CAACAG---CAA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................C------A---------------GC---AGC---A---------G---CGTCA---------GCAG---CA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	4	0.50	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCA------------GCAACACCAA-AGAC............................................................................................	19	4	0.25	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................TACAGCA---------G---------CAGCAGCAAC...............................................................................................................................................................	18	13	0.15	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................CTACAGCA---------G---------CAGCAGCAAC...............................................................................................................................................................	19	7	0.14	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................CAGCA---------G---------CAGCAGCAACTA.............................................................................................................................................................	18	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droEre2

GGTG--GCGCACCT---------------------GC------AGCAGCAGCAGCAGCAGC---AGC---------------------A---------GCTG---GACCAG------CGCAACAACCTG--CAT---CAGC-----------AA-------------------------ATC-CAT------------------------------------------------------------CACCACCAC---CAA-------------------------------------------------------------------CA------------------------------------------------------------------------------GCAGCAGCA---GCAACAGCAG------CA---GCAGCAACAGC---------------AGCAGCAGCAGCAGCAGCA------------GCAACAGAAACAGCAG------------------CAGCAG---CAGCAGCA----------TATGCAGC---A-------------------------A-CCATTTT	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
...G--GCGCACCT---------------------GC------AGCAGCAGCAGCA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	1	0	0	0	0	0	0
..................................................................................................GCTG---GACCAG------CGCAACAACC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGCAGCAGCA------------GCAACAGAAACAGCA............................................................................................	28	1	1.00	1	0	0	0	0	0	1	0
............................................................................................................................................C-----------AA-------------------------ATC-CAT------------------------------------------------------------CACCACCAC---CAA-------------------------------------------------------------------CA------------------------------------------------------------------------------GCAGC................................................................................................................................................................................................	28	1	1.00	1	0	1	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAACAGAAACAGCAG------------------CAGCAG---C...............................................................	23	1	1.00	1	0	0	0	0	1	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCA------------GCAACAGAAACAGCAG------------------CA.......................................................................	22	1	1.00	1	0	0	0	0	1	0	0
...........................................................GC---AGC---------------------A---------GCTG---GACCAG------CGC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	1	0	0	0
........................................................................................................................................................................................AT------------------------------------------------------------CACCACCAC---CAA-------------------------------------------------------------------CA------------------------------------------------------------------------------GCA..................................................................................................................................................................................................	19	2	0.50	1	0	0	0	0	1	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCA------------GCAACAGAAACAGCA............................................................................................	21	2	0.50	1	0	0	0	0	0	1	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAGAAACAGCAG------------------CAGCAG---CA..............................................................	22	2	0.50	1	0	0	0	0	1	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGCAGCAGCAGCA------------GCA........................................................................................................	19	20	0.25	5	0	0	0	0	0	5	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCA------------GCAACAGAAACAGCA............................................................................................	18	5	0.20	1	0	0	0	0	0	1	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGCAGCA------------GCAACAGAA..................................................................................................	19	18	0.06	1	0	0	0	0	1	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................G------CA---GCAGCAACAGC---------------AGCAGC....................................................................................................................................	20	20	0.05	1	1	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................AA-------------------------------------------------------------------CA------------------------------------------------------------------------------GCAGCAGCA---GCAACAGCAG------CA---....................................................................................................................................................................	25	20	0.05	1	0	0	0	1	0	0	0
....................................................................................................................................................................................................................................................................A-------------------------------------------------------------------CA------------------------------------------------------------------------------GCAGCAGCA---GCAACAGC.................................................................................................................................................................................	20	20	0.05	1	1	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................CAACAGCAG------CA---GCAGCAACAGC---------------A.........................................................................................................................................	23	20	0.05	1	0	0	0	0	0	1	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAGC---------------AGCAGCAGCAGCAGC...........................................................................................................................	21	20	0.05	1	0	0	0	1	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAG------CA---GCAGCAACAGC---------------AGCA......................................................................................................................................	22	20	0.05	1	0	0	0	0	1	0	0
..................................................GCAGCAGCAGC---AGC---------------------A---------GCT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	20	0.05	1	1	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCAG------CA---GCAGCAACAGC---------------..........................................................................................................................................	19	20	0.05	1	0	0	0	0	0	1	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCA---GCAACAGCAG------CA---GCA.................................................................................................................................................................	21	20	0.05	1	0	0	0	1	0	0	0
...................................................................................................................................................................................................................................................................AA-------------------------------------------------------------------CA------------------------------------------------------------------------------GCAGCAGCA---GCAACAGCAG------C........................................................................................................................................................................	24	20	0.05	1	0	0	0	0	0	1	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAACAGC---------------AGCAGCAGCAGCAGCA..........................................................................................................................	25	20	0.05	1	0	0	0	0	0	1	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCAGCAGCA------------GCAACAGA...................................................................................................	19	20	0.05	1	0	0	0	1	0	0	0
...........................................................................................................................................................................................................................................................CCAC---CAA-------------------------------------------------------------------CA------------------------------------------------------------------------------GCAGCAGCA---.........................................................................................................................................................................................	18	20	0.05	1	0	0	0	0	0	1	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCA---GCAACAGCAG------CA---GC..................................................................................................................................................................	20	20	0.05	1	1	0	0	0	0	0	0

droYak3

TGGTC-CCGCAGCAG------CA---G---C------------AGCA---------ACAAC---AGC---A---------G---CAGCA---------ACAG---CAGCAGGCGCA-------------------------------------A-------------------CAGTTGCCG-CCGGGCGTTGGA--------G-TT-GCCAGCCC-----------------------------------G---C----------------------------------------------------------------------------------------------------------------------------------------------------------TGCAGCA---------G---------CAGCAGCAACAGCAGCAGCAGCAACAACAGCAGCAGCAGCAACAGCAACA------------GCAGCAGCAGCA---------------------------------G---CA----------------GC---TGATCAACAACGGAGGCGTCTCCGCCGGCACACCC	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCAACAACAGCAGCAGCAGC.................................................................................................................................	23	20	0.15	3	0	3	0	0	0	0	0	0	0	0	0
..................................................................C---A---------G---CAGCA---------ACAG---CAGCAGGCGCA-------------------------------------....................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	8	0.13	1	0	0	0	0	0	0	1	0	0	0	0
..........................G---C------------AGCA---------ACAAC---AGC---A---------G---CAGCA---------...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.10	2	0	2	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAGCAGCAGCAGCAACAGCAACA------------GCA........................................................................................................	28	12	0.08	1	0	1	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAACAACAGCAGCAGCAGCAACAGC...........................................................................................................................	27	17	0.06	1	0	0	1	0	0	0	0	0	0	0	0
..........................G---C------------AGCA---------ACAAC---AGC---A---------G---CAGCA---------ACAG---CAGC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	29	18	0.06	1	0	0	1	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................TGCAGCA---------G---------CAGCAGCAACAG.............................................................................................................................................................	20	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
..........................G---C------------AGCA---------ACAAC---AGC---A---------G---CAGCA---------ACAG---C...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
..........................G---C------------AGCA---------ACAAC---AGC---A---------G---CAGCA---------AC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
.........CAGCAG------CA---G---C------------AGCA---------ACAAC---A............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	20	0.05	1	0	0	0	0	0	0	1	0	0	0	0
.............................................CA---------ACAAC---AGC---A---------G---CAGCA---------ACAG---CAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................G---------CAGCAGCAACAGCAGCAGCAGCAAC................................................................................................................................................	26	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCAGCAGCAACAACAGCAGC.......................................................................................................................................	23	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCAACAGCAACA------------GCAGCAGC...................................................................................................	23	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCAACAGCAACA------------GCAGCAGCAGC................................................................................................	25	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
...........................................AGCA---------ACAAC---AGC---A---------G---CAGCA---------ACAG---C...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCAGCAACAGCAACA------------GCAGCA.....................................................................................................	24	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAGCAACA------------GCAGCAGCAGCA---------------------------------G---CA----------------G.......................................	26	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAGCAACA------------GCAGCAGCAGCA---------------------------------G---C.........................................................	23	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
..........................G---C------------AGCA---------ACAAC---AGC---A---------G---CAGCA---------ACA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAACAACAGCAGCAGCAGC.................................................................................................................................	21	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAGCAACA------------GCAGCAGCAGCA---------------------------------..............................................................	22	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0
..........................G---C------------AGCA---------ACAAC---AGC---A---------G---CAGCA---------ACAG---....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
..............................C------------AGCA---------ACAAC---AGC---A---------G---CAGCA---------ACAG---C...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0

droEug1

CA---------GCAG------CA---A---CA---GC------AG------------CAGC---AGCAGTCCGGTGATTCA---CAGCA---------ATAG---CAGTGCCAACA--------A--------------------------------------TATGCTGCAACAGTTGTCG-CAA----CAGA--------------ATGTCACGGTGACGGCA---------------------CA------------------------------------------------------------------------------------------------------------------CCAC----------------AG------------------C---CAGCAACAGCAGCAGCAACAACAG------CAGTTGCAACAGCAGC---------------A---CCACAGCCACCACCA------------GCAGCAGCAACAGCAG------------------CAGCAA---CAT---CT------CCTG-------------------------------------TCCAGTGTG	Size	Hit Count	Total Norm	Total
No Reads

droBia1

--------GCAGCAAC------A---A---CA---GC------AGCA------------GC---AGC---A---------GCAACACAC---------GTTG---CATCAG--------------------------CAGCG---GGGA--------------------------------------------C-CCTTTAT-------------------------------------------------------------------------AGAGGGCA-----------ATGATGTG----C------------------------------------------------CCG-ATCCCTC----------------AGCCACCTAC--------CAC---TCGGAACACCA---------G---------CAACAGCAGCAGCAGC---------------AG---GCCGACGAGCGACA------------GCAGCAATATGAGCAG------------------ATGCGA---TAT---GC------CCAG-------------------------------------AGCCATGTG	Size	Hit Count	Total Norm	Total
No Reads

droTak1

AACGG-TTACC-TCGCTGCAGCA---G---C------------AGCA---------ACAAC---AGCAGGC---------G---CAGCA---------GCAACAGCAGCAG---CA-------------------------------------A-------------------CAGAGAATG-CAG-------------------ATGATCAACCA-----------------------------------G---CAGCAGA-------------------------------T-------------------------------------------------------------GCT-----------------G------AA------------------C---CACCAACAGCT---------G---------CAACAGCAGCAGCAGC---------------AACTCGCCCAACAGCAGCA------------GCAGCAGCAAGGGCAG------------------CAGCAG---CAA---CA---------G-------------------------------------GGCAA---T	Size	Hit Count	Total Norm	Total
No Reads

droEle1

--------GCTGCAAC------A---G---C------------AATT---------GCAAC---AGC---A---------A---CAGCA---------ACAG---CAGCAGCAGCAAC-----------------------------CATCG---------------------------------------------CCCAT-GTTGGGCAGACCA-----------------------------------G---CGGCAGCCACGCCCACAGAT--ATGCAG-----------CGTTATG----TGCAGAGGATGCA------------------------------------------------------------------------------------A---CAACAACAGCA---------G---------CAACAGCAGCAACAGC---------------AG------CAACAGCAGCA------------GCAGCAGCAACAGGAG------------------CTGTACCGCCAG---CA----------ACAGC--------------------------------AGCAACATC	Size	Hit Count	Total Norm	Total
No Reads

droRho1

CAAGCGCTGCAGTC---------------------GCAGCAGCAGCA------GCAGCAGC---AGC---T---------G---CAGTA---------GCAG---CAGCAG--------------------------CAGC-----------AACGCT------------------------------------AG-C-----G---------------TCGGCAG--------------------CGACGG---CAGCAG-------------------------------------CATG----T------------------------------------------------CCAAAACAAGCA-----------------GCGGTAATCCAAGTGCA-G---CAGCAACACAA---------G---------CAGCAGCAGCAGCAGC---------------AGCGG------------CT------------GCAGCAGCAGCA------------------------GCAA---GTGCAACA----------AATGCC-------------------------------GCCAATGCC	Size	Hit Count	Total Norm	Total
No Reads

droFic1

--------GCAACAGC------A---G---C------------AGCA---------GCAAC---AGC---A---------A---CACAC---------GCTG---CACCAG--------------------------CAGCG---AGGA--------------------------------------------C-CCTTCAT-------------------------------------------------------------------------CGAGGGCA-----------ACGACGTC----T------------------------------------------------CCG-ATCCCTC----------------GACCACTTAT--------CACTCGG---AGCACCA---------GCAG------CA---GCAGCAGCAGC---------------AGCAGGCGGACGAGCGGCA------------GCAGCAGTACGAACAG------------------ATGCGG---CAG---CAGTACGCCCAG-------------------------------------AGCCACGTG	Size	Hit Count	Total Norm	Total
No Reads

droKik1

--------GCAGCAGC------A---G---C------------AGCA---------ACAGC---AGCAGCA---------G---CAGCA---------ACAACAGCAGCAG---CATC-----------TGATG---GA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCAACAGCATCTGCACCAACAGCAGCGATTGCAGACG------------------------------------------------------C---ATCAGCA---------GCAA------TA---CCAGCAGCAAC---------------AGTATGCC------ATGCCGCATCAGCAACAGCAGCAGCAGCA---------------------------------G---CA----------------GAGGGTGGTCAGTGATTTTGC------AGAGAG------C	Size	Hit Count	Total Norm	Total
No Reads

droAna3

--------GCAGCAAC------T---C---CA---GC------AGCA------------GC---AGC---A---------GCCACAGCA---------ACAG---CAACAGCAGCAGC------------------------CACACCATCA-A-------------------------CAG-CAG-------------------CAGACATCCCA-----------------------------------G---CAACAGC-------------------------------AGCAGCATCAAGCACA------ACAACAACATCAGCAG---CAGCA------------GCA-ATC-----------------------------------------------------------------------------------ACAACA------------------------ACATAAGCAGCAACA------------GCAGCAGCACCAGCAGCAGCAACATCTTCAGCAGAAGCAG---CA---ACA----------GCAGCA-------------------------------------GCA	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
...........GCAAC------T---C---CA---GC------AGCA------------GC---A............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	10	0.20	2	2	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACA------------GCAGCAGCACCAGCAGCA.........................................................................................	21	7	0.14	1	1	0	0	0	0	0
..........AGCAAC------T---C---CA---GC------AGCA------------GC---A............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	7	0.14	1	1	0	0	0	0	0
.............AAC------T---C---CA---GC------AGCA------------GC---AGC---A---------.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	10	0.10	1	0	0	0	1	0	0
..............AC------T---C---CA---GC------AGCA------------GC---AGC---A---------GC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	11	0.09	1	0	0	0	0	0	1
.............................................................................................................................................................................................................................................................................................................................AACAACATCAGCAG---CAGC...........................................................................................................................................................................................................................................................................	18	13	0.08	1	0	1	0	0	0	0
.......................................................................................CA---------ACAG---CAACAGCAGCAGC------------------------C..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	13	0.08	1	0	1	0	0	0	0
......................................................................................................................................................................................................................CA-----------------------------------G---CAACAGC-------------------------------AGCAGCATCA..............................................................................................................................................................................................................................................................................................................	20	16	0.06	1	1	0	0	0	0	0
.......................................................................................................................................................................................................................A-----------------------------------G---CAACAGC-------------------------------AGCAGCATCA..............................................................................................................................................................................................................................................................................................................	19	17	0.06	1	0	0	0	0	0	1
...........................................................................................................................................................................................................................................................G---CAACAGC-------------------------------AGCAGCATCA..............................................................................................................................................................................................................................................................................................................	18	20	0.05	1	0	0	0	0	0	1
......................................................................................................................................................................................................................CA-----------------------------------G---CAACAGC-------------------------------AGCAGCATC...............................................................................................................................................................................................................................................................................................................	19	20	0.05	1	0	0	0	0	0	1

droBip1

--------GCAACAGC------A---G---C------------AGAT---------GCAGC---AGC---A---------A---CAGCC---------ACCG---CAGCAG--------------------------CATA---CACCCTCG---------------------------------------------C-----C---------------ACGACAA--------------------TCCCCATTGCAGCAGC-------------------CA-----------ACGACACCAA------------------------------C-------CT--------------------------------------------------------T-G---CAACAACAGCA---------G---------CAGCAGCAACAGCAGC---------------AACAGCCACCC---CTTCA---------------------------G------------------CAGCAG---CAACAACA----------AGC--------TCCTCAAGTATGTGGC------A--GGTTAATACT	Size	Hit Count	Total Norm	Total
No Reads

dp5

CA---------ACAG------CAGCAA---CA---AC------AGAA------------------GC---A---------G---CAGCA---ACAGCAGCAG---CAGCAG------C-----------AGGTGCAGCAGC-----------AACATC------------------------------------AG-C-----A---------------ACAGCAA--------------------CATCAGCAG---CAA-------------------------------------------------------------------CA---------------------GCA-GCA--------------------------------------------A---A---------A---G------CAA------CA---TCAGCAGCAAC---------AGCAGCAGCAGCAGCAACAACAGCA------------ACAACAGCAACATCAG------------------CAACAA---CAA---CA----------GCTGCAGC---C-------------------------CCCACCAAG	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
............................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCAAC---------AGCAGCAGCAGC....................................................................................................................................	20	20	0.50	10	0	10	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACATCAG------------------CAACAA---CAA---CA----------GC............................................	21	3	0.33	1	0	1	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATCAG------------------CAACAA---CAA---CA----------GC............................................	19	6	0.17	1	0	0	1	0	0	0	0	0	0	0
........................CAA---CA---AC------AGAA------------------GC---A---------G---CAGC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	7	0.14	1	0	0	1	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGCAGCAGCAACAACAGCA------------...........................................................................................................	22	20	0.10	2	0	2	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCAGCAGCAACAACAGCA------------...........................................................................................................	21	20	0.10	2	0	1	0	0	1	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................CAA------CA---TCAGCAGCAAC---------AGCAGC..........................................................................................................................................	22	11	0.09	1	0	0	1	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................CAA--------------------CATCAGCAG---CAA-------------------------------------------------------------------CA---------------------GCA-GC........................................................................................................................................................................................................................................................	22	11	0.09	1	0	0	1	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................A---TCAGCAGCAAC---------AGCAGCAGCAGC....................................................................................................................................	24	14	0.07	1	0	0	0	0	1	0	0	0	0	0
................................................................................G---CAGCA---ACAGCAGCAG---CAGCAG------C-----------AGG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	14	0.07	1	0	1	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................CA---TCAGCAGCAAC---------AGCAGC..........................................................................................................................................	19	20	0.05	1	0	1	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCAGCAAC---------AGCAGCAGCA......................................................................................................................................	20	20	0.05	1	0	0	0	0	1	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCAGCAAC---------AGCAGCAGCAGCA...................................................................................................................................	23	20	0.05	1	0	0	0	1	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGCAGCAGCAGCAACAACA..........................................................................................................................	22	20	0.05	1	0	0	0	0	1	0	0	0	0	0
........................................................................................A---ACAGCAGCAG---CAGCAG------C-----------A...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	20	0.05	1	0	0	0	0	1	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGCAAC---------AGCAGCAGCAGCAG..................................................................................................................................	23	20	0.05	1	0	1	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAACAACAGCA------------ACAACAGCAAC................................................................................................	23	20	0.05	1	0	1	0	0	0	0	0	0	0	0
................................................................................G---CAGCA---ACAGCAGCAG---CAGCA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	0	0	0	1	0	0	0	0	0
................................................................................................CAGCAG---CAGCAG------C-----------AGGTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	20	0.05	1	0	1	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................C---------AGCAGCAGCAGCAGCAACA.............................................................................................................................	20	20	0.05	1	0	0	0	0	0	1	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAAC---------AGCAGCAGCAGCAG..................................................................................................................................	20	20	0.05	1	0	1	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGCAGCAGCAACAACAGCA------------A..........................................................................................................	23	20	0.05	1	0	0	0	0	1	0	0	0	0	0
.................................................................GC---A---------G---CAGCA---ACAGCAGCAG---CA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	0	0	0	0	1	0	0	0	0
......................................................................................................................................................................................................................................................CATCAGCAG---CAA-------------------------------------------------------------------CA---------------------GCA-GC........................................................................................................................................................................................................................................................	19	20	0.05	1	0	1	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGCAGCAGCAGCAACA.............................................................................................................................	19	20	0.05	1	0	0	0	0	0	1	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCAACAACAGCA------------ACAACAG....................................................................................................	22	20	0.05	1	0	1	0	0	0	0	0	0	0	0
....................................................................................CAGCA---ACAGCAGCAG---CAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	20	0.05	1	0	1	0	0	0	0	0	0	0	0

droPer2

CA---------GCAG------CA---ACAACA---GC------AGCA------------ACATCA---------------ACTGCAGCA---------GCAG---CATCAG--------------------------CAGC-----------AGCAA----------------CAGCAGCTG-CAG----CAGAA---------------------GCAGCAAC--------------------------AGCAA---CAA----------------------CAGCAGCAGCA-------------------------------------------------------------ACATAAACATCA-----------------------------------A---C---------A---G------CAACAACAGCAGCAGCAACAGCAGC---------------A---GCAGCAACAACAGCA------------GCAGCAACAACAGCAG------------------CAGCAA---CAA---CA----------GCAGCAGC---A-------------------------GACAGCGAA	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
...............................................................................................................................................................................................................................................................................................................................................................................................................................................AACAGCAGCAGCAACAGCAGC---------------A---......................................................................................................................................	22	20	0.15	3	0	0	3	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................AACAGCAGCAGCAACAGCA...........................................................................................................................................................	19	20	0.10	2	0	0	2	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCAACAGCAGC---------------A---GCAGC.................................................................................................................................	19	20	0.05	1	0	0	0	0	1	0
................................................................................................................................................................................................................................................................................................................................................................................................................................A---G------CAACAACAGCAGCAGC..................................................................................................................................................................	18	20	0.05	1	0	1	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGC---------------A---GCAGCAACAACAGCA------------GCA........................................................................................................	24	20	0.05	1	0	0	1	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAACAGCAG------------------CAGCAA---CAA---..........................................................	20	20	0.05	1	0	0	1	0	0	0
...........................................................................................................................................................................................................................................................GCAA---CAA----------------------CAGCAGCAGCA-------------------------------------------------------------ACA.......................................................................................................................................................................................................................................................	21	20	0.05	1	0	0	1	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCAACAGCAGC---------------A---GCAGCAACA.............................................................................................................................	23	20	0.05	1	0	1	0	0	0	0
...........................................................................................................................................................................................................................GCAAC--------------------------AGCAA---CAA----------------------CAGCAGCAGC........................................................................................................................................................................................................................................................................................................................	23	20	0.05	1	0	1	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAACAACAGCAG------------------CAGCAA---CA..............................................................	21	20	0.05	1	0	0	1	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................................CAACAGCAGCAGCAACAGCAGC---------------A---......................................................................................................................................	23	20	0.05	1	0	0	1	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAACAGCA------------GCAGCAACAA.................................................................................................	20	20	0.05	1	0	0	1	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................G------CAACAACAGCAGCAGCAACA..............................................................................................................................................................	21	20	0.05	1	0	0	1	0	0	0

droWil2

CA---------GCAG------CA---G---C------------AACA---------ACAAC---AGCAG-----------G---CAGCA---------GCCG---CAGCAGCAGCAGC-----------CGCT------------GCCGCCG-CCAGCAA---T--------------------------------------------ACTTCCCA-----------------------------------G---CAGCAGC------------------CAA-----------ACGATGTCTA----------------------------------------------------------CCTC----------------AG------------------C---CAACAACAGCA---------G---------CAGCAGCAACAGCAGC---------------AA------CAACAACAGCA------------GCAACAACAACAACAG------------------TTGGCC---TTCCAACAGCA---ATTG-------------------------------------------GCC	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
.............................................................................................................................................................................................................................................................................................................CTA----------------------------------------------------------CCTC----------------AG------------------C---CAACAACAGCA---------G---------CAGC.....................................................................................................................................................................	26	1	1.00	1	0	1	0	0	0
......................A---G---C------------AACA---------ACAAC---AGCAG-----------G---CAGCA---------GCCG---C...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	28	1	1.00	1	0	0	0	1	0
............................................................C---AGCAG-----------G---CAGCA---------GCCG---CAGCAGCA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	1
.............................................................................................................................................................................................................................................................................................................CTA----------------------------------------------------------CCTC----------------AG------------------C---CAACAACAGCA---------G---------CAGCA....................................................................................................................................................................	27	1	1.00	1	0	0	0	1	0
...............................................................................................................................................................A---T--------------------------------------------ACTTCCCA-----------------------------------G---CAGCAGC------------------C....................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	1	0
..................................................................................................................................................................................................................TTCCCA-----------------------------------G---CAGCAGC------------------CAA-----------ACG....................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	1	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAACAGCA------------GCAACAACA..................................................................................................	18	20	0.15	3	0	0	0	3	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A------CAACAACAGCA------------GCAACAACA..................................................................................................	21	20	0.10	2	0	0	0	2	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAACAGCAGC---------------AA------CAACAACA..........................................................................................................................	22	20	0.10	2	0	0	0	2	0
............CAG------CA---G---C------------AACA---------ACAAC---AGC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	20	0.10	2	0	0	0	2	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................CAACAGCA---------G---------CAGCAGCAACA..............................................................................................................................................................	20	20	0.10	2	0	0	0	2	0
.A---------GCAG------CA---G---C------------AACA---------ACAAC---AGCA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	20	0.10	2	0	0	0	2	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCAGC---------------AA------CAACAACAGCA------------...........................................................................................................	20	20	0.10	2	0	0	0	2	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACAGCAGC---------------AA------CAACAACAG.........................................................................................................................	21	20	0.05	1	0	1	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGC---------------AA------CAACAACAGCA------------GCAACAA....................................................................................................	23	20	0.05	1	0	0	0	1	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACAACAGCA------------GCAACAACAACA...............................................................................................	23	20	0.05	1	0	0	0	0	1
....................................................................................CAGCA---------GCCG---CAGCAGCAGCA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	20	0.05	1	0	0	0	1	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................C---------------AA------CAACAACAGCA------------GCAACAACAACA...............................................................................................	26	20	0.05	1	0	0	0	1	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................CAACAGCA---------G---------CAGCAGCAACAG.............................................................................................................................................................	21	20	0.05	1	0	0	0	1	0
................................................................................G---CAGCA---------GCCG---CAGCAGCAGCA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	0	0	1	0
............CAG------CA---G---C------------AACA---------ACAAC---AGCAG-----------.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	1	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................ACAACAGCA---------G---------CAGCAGCAACAGC............................................................................................................................................................	23	20	0.05	1	0	0	0	1	0
......................................................................................................................................................................................................................................................................................................................................................................................................................CAACAACAGCA---------G---------CAGCAGCAAC...............................................................................................................................................................	22	20	0.05	1	0	0	0	1	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AA------CAACAACAGCA------------GCAACAA....................................................................................................	20	20	0.05	1	0	0	0	1	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCAACAGCAGC---------------AA------CAACAA............................................................................................................................	21	20	0.05	1	0	0	0	1	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGC---------------AA------CAACAACAGCA------------GCAA.......................................................................................................	23	20	0.05	1	0	1	0	0	0

droVir3

CA---------ACAG------CA---A---CAGCAAC------AGCC------------------GC------------------AGCAGCAGCAGCAGCAG---CAGCAG--------------------------CA--------------GCAGCAGTAATTA------------GCTG-CAG----CAGCA---------------------GCAGCAGC--------------------------AGCAG---CAG-------------------------------------TAA--------------------TTAGCTG------------------------------------------------------------------------------C---AGCAGCA---------GCAG------CC---GCAGCAGCAGC---------------AGCAGCCGCAGCAGCAGCA------------GCAGCCGCAGCAGCAG------------------CAGCAG---CAG---TAGTA---ATTAGCTGCA-------------------------------------GCA	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
..........................A---CAGCAAC------AGCC------------------GC------------------AGCAGC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	5	0.20	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCAGCAGCA------------GCAGCCGCAG.................................................................................................	21	20	0.15	3	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCAGCAGC---------------AGCAGCCGCAG...............................................................................................................................	21	20	0.15	3	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCGCAGCAGCAGCA------------GCAGCCGC...................................................................................................	23	9	0.11	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................G------CC---GCAGCAGCAGC---------------AGCAGCCGC.................................................................................................................................	23	9	0.11	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCAGCA------------GCAGCCGCAGCA...............................................................................................	20	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................AGCAGCAG---CAGCAG--------------------------CA--------------GCAGCAGTA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCA------------GCAGCCGCAGCAGCAG------------------CAGCA....................................................................	27	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................CAGCA---------------------GCAGCAGC--------------------------AGCAG---CAG-------------------------------------T..................................................................................................................................................................................................................................................................................................................	22	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
.......................................................................................CAGCAGCAGCAGCAG---CAGCAG--------------------------CA--------------GCAGCA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................	29	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A------------GCAGCCGCAGCAGCAG------------------C........................................................................	18	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCAGC---------------AGCAGCCGCAGCA.............................................................................................................................	20	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................C---AGCAGCA---------GCAG------CC---GCAGCA..............................................................................................................................................................	20	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................A---------GCAG------CC---GCAGCAGCAGC---------------..........................................................................................................................................	18	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGCCGCAGCAGCAGC........................................................................................................................	18	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................C---AGCAGCA---------GCAG------CC---GCAGCAG.............................................................................................................................................................	21	20	0.05	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droMoj3

--------GCAGCAAC------A---A---CA---AC------AGCA------------GC---AGC---A---------GCTTTGATA---------GCAG---CAACAG--------------------------CAGCAAAAGATTTCG---------------------------TCTTAGA----GCGA-CTTTTGTCA----GTGTCA------AAGCAGCTTAGATAGTTTGCCTGTTGCAC-AA---CAACAGA------------------------------------------------------------------CA------------------------------------------------------------------------------CAAGCAGCA---GCAACAGCAG------CA---GCAACAACAGC---------------AGCAGCAGCAACAGCAGCA------------GCAGCAACAACAGCAG------------------CTGTTG---CTT---TAGTC-------AGCAC--------------------------------AGCAATGGA	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
.............................................................................................................................................................................................................................................................................................................................................................................................................................................G------CA---GCAACAACAGC---------------AGCAGCAGC.................................................................................................................................	23	20	0.15	3	0	0	0	0	3	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAACAGC---------------AGCAGCAGCA................................................................................................................................	19	20	0.15	3	3	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................AG------CA---GCAACAACAGC---------------AGCAGC....................................................................................................................................	21	20	0.10	2	2	0	0	0	0	0
...............C------A---A---CA---AC------AGCA------------GC---AGC---A---------GC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	20	0.10	2	0	0	0	0	2	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................ACAGCAG------CA---GCAACAACAGC---------------..........................................................................................................................................	20	20	0.10	2	0	0	0	0	2	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCAGCAACAGCAGCA------------GCAGC......................................................................................................	23	20	0.10	2	2	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCAACAGCAGCA------------GCAGCAACAACAGC.............................................................................................	29	18	0.06	1	0	0	0	0	1	0
........GCAGCAAC------A---A---CA---AC------AGCA------------GC---AG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	20	0.05	1	1	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGCAACAGCAGCA------------GCAGCA.....................................................................................................	22	20	0.05	1	1	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAGCAGCA------------GCAGCAACA..................................................................................................	19	20	0.05	1	0	1	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAGCAGCA------------GCAGCAACAACAGCA............................................................................................	25	20	0.05	1	1	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAACAACAGC---------------AGCAGCAGCAACA.............................................................................................................................	24	20	0.05	1	0	0	0	0	1	0
................................................................................................................................................................................................................................................................................................................................................................................................................................A---GCAACAGCAG------CA---GCAACAACAGC---------------AGC.......................................................................................................................................	27	20	0.05	1	0	0	0	0	1	0
.........CAGCAAC------A---A---CA---AC------AGCA------------GC---AGC---A---------G............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	20	0.05	1	1	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCA------------GCAGCAACAACAGCAG------------------.........................................................................	19	20	0.05	1	1	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................A---GCAACAGCAG------CA---GCAACA..............................................................................................................................................................	19	20	0.05	1	0	0	0	0	1	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................AGCA---GCAACAGCAG------CA---GCAACAA.............................................................................................................................................................	23	20	0.05	1	1	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................AACAGCAG------CA---GCAACAACAGC---------------AGCA......................................................................................................................................	25	20	0.05	1	1	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................C---------------AGCAGCAGCAACAGCAGCA------------GC.........................................................................................................	22	20	0.05	1	1	0	0	0	0	0
.........CAGCAAC------A---A---CA---AC------AGCA------------G.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	20	0.05	1	1	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................CA---GCAACAGCAG------CA---GCAACA..............................................................................................................................................................	20	20	0.05	1	1	0	0	0	0	0
.........CAGCAAC------A---A---CA---AC------AGCA------------GC---AGC---A---------GC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	20	0.05	1	0	0	0	0	1	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................CAACAGCAG------CA---GCAACAACAGC---------------AGCAG.....................................................................................................................................	27	20	0.05	1	0	0	0	0	1	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCA------------GCAGCAACAACAGCA............................................................................................	21	20	0.05	1	0	0	0	0	1	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................A---GCAACAACAGC---------------AGCAGCAGCA................................................................................................................................	22	20	0.05	1	0	0	0	0	1	0

droGri2

--------GCGGCAGC------A---G---C------------AGCA---------GCAGC---AGC---G---------G---CAGCA---------GCAG---CAGCAGCAGCAGC-----------TCTG------------GTCAGC-AGCAGCAG----------------CAGCTG-CAG----CAGCA---------------------GCAGCAGC--------------------------AGCGG---CAG----------------------------------------------------------------CAGCAG---------------------------------------------------------------------------C---AGCAGCA---------GCGG------CA---GCAGCAGCAGC---------------AGCAG---CGGCAGCAGCAGCAGCGGC---AGCAGCAGCAGCA------------------------GCAG---CAGCAGCA----------GCAGCA-------------------------------------GCG	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
No Reads

dsi_5218

x:11698865-11698967 +

Candidate

Unknown

Predicted structure

Flybase annnotation

Repeatable elements

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads