ID:

dsi_5217

Coordinate:

3l:8268570-8268719 +

Confidence:

Candidate

Type:

Unknown

[View on UCSC Genome Browser {Cornell Mirror}]

Legend:

mature

star

mismatch in read

Predicted structure

Flybase annnotation

intergenic

No Repeatable elements found

Sense Strand Reads

CATTTTCCTGCTTTAATACCCCCCAGCTTTTAACGAATTCGGTATCTTGTGCGCACGTCCAAAATTATGCTTCAGCTCTTTATAATTTGCAATTTCGTTTACTCCACGCTTTGAATAACCCTTACCAAAACACAAATATCCCAATATAACCAGCATTCGATCCAGATTCCAGGTTCATATTAACATTTTATTACTTGCAGGGAACTGGAGGAGATCAAAAACGCACAAGCTGCTGCGGCGAGTCAATCCC ************************************************..(((.((...((((((((...........)))))))).......(((.......)))..................................(((((((((.....((......)).....)))).)))))...........)).)))..************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR553487 NRT_0-2 hours eggs	M024 male body	SRR553485 Chicharo_3 day-old ovaries	GSM343915 embryo	M023 head	SRR553486 Makindu_3 day-old ovaries	SRR553488 RT_0-2 hours eggs
..........................................................................................................................................................................................................GACTGAAGGAGATCAAAAA.............................	19	2	1	3.00	3	2	0	1	0	0	0	0
.....TCCTGCTTTAATACCCCC...................................................................................................................................................................................................................................	18	0	1	1.00	1	0	1	0	0	0	0	0
..................................................................................................................................................................................................................................AAGCTGCTGCGGCGAGTCAATCC.	23	0	1	1.00	1	0	0	0	1	0	0	0
................................................................................................CTTTACTCCACACTTTGAA.......................................................................................................................................	19	2	3	0.67	2	2	0	0	0	0	0	0
.................................................................................................................................................................................................................................CAAGCTGTTGTCGCGAGTC......	19	3	13	0.38	5	0	3	0	0	2	0	0
..........................................................................................................................................................................................................GACTGAAGGAGATCAAAAAA............................	20	3	17	0.12	2	0	0	0	0	0	2	0
..........................................................................................................................................................................................................GACTGAAGGAGATCAAAA..............................	18	2	9	0.11	1	1	0	0	0	0	0	0
...............................................................................................................................................................................................................TAGGGGATCAAAAACG...........................	16	2	20	0.05	1	0	0	0	0	0	0	1
..............................................................................................................................................................................................................TGAGGAGATCAAAAA.............................	15	1	20	0.05	1	0	0	0	0	0	0	1

Anti-sense strand reads

GTAAAAGGACGAAATTATGGGGGGTCGAAAATTGCTTAAGCCATAGAACACGCGTGCAGGTTTTAATACGAAGTCGAGAAATATTAAACGTTAAAGCAAATGAGGTGCGAAACTTATTGGGAATGGTTTTGTGTTTATAGGGTTATATTGGTCGTAAGCTAGGTCTAAGGTCCAAGTATAATTGTAAAATAATGAACGTCCCTTGACCTCCTCTAGTTTTTGCGTGTTCGACGACGCCGCTCAGTTAGGG ************************************************..(((.((...((((((((...........)))))))).......(((.......)))..................................(((((((((.....((......)).....)))).)))))...........)).)))..************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	GSM343915 embryo	SRR553487 NRT_0-2 hours eggs	M024 male body	O001 Testis	O002 Head	SRR618934 dsim w501 ovaries
.................................................................................................................TTAGTGGGAATGTTTTTGTGTAT..................................................................................................................	23	3	1	1.00	1	1	0	0	0	0	0
...................................................................................................ATGAGATGCGAATGTTATTGG..................................................................................................................................	21	3	2	0.50	1	0	0	1	0	0	0
....................................................................................................................................................................CTAAGGTTCAAGTACACTTG..................................................................	20	3	9	0.44	4	0	0	0	2	2	0
..............................................................................................CGGAAATGAGGTGTGAAACT........................................................................................................................................	20	3	4	0.25	1	0	1	0	0	0	0
...............................................................................................GGAAATGAGGTGTGAAACTTT......................................................................................................................................	21	3	5	0.20	1	0	1	0	0	0	0
....................................................................................................................................................................CTAAGGTCGAAGTAT.......................................................................	15	1	13	0.15	2	0	2	0	0	0	0
.....................................................................................................................................................................TAAGGTTCAAGTAGACTTGT.................................................................	20	3	10	0.10	1	0	0	0	0	0	1
.............ATTATGGGGGGTGAAAAA...........................................................................................................................................................................................................................	18	2	13	0.08	1	1	0	0	0	0	0
.................................................................................................................TTGATGGGAATGGCTTTGT......................................................................................................................	19	3	16	0.06	1	0	1	0	0	0	0
....................................................................................................................................................................CTGAGTTCCAAGTATA......................................................................	16	2	20	0.05	1	0	1	0	0	0	0
.................................................CCGCGCGCAAGTTTTAATA......................................................................................................................................................................................	19	3	20	0.05	1	0	0	0	0	0	1

Generated: 04/24/2015 at 10:47 AM