ID:

dsi_5198

 Coordinate:

2r:5878770-5878919 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-21.3

Flybase annnotation

CDS [2r_5878920_5879065_-]; exon [2r_5878920_5879065_-]; intron [2r_5877937_5878919_-]

No Repeatable elements found

Sense Strand Reads

##################################################--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
CACCATCACCGCTACAACGGCACCTGGGACTGCATCAAACAGACTTGGAGGTACGAGCGCATGCGAGGTTTCTATAAGGGCCTGGTGCCCTACCTGGTCCACGTCACGCCCAACATCTGCATGGTCATGCTGATCTGGGAGAAGCTGACCAGCTAGATGGAGTATTAGTACTAGAGCATCGAATCTAGAATCTGACAGAGAATTTAAGCTAAGCACCTAGAATACACGAATCTTTCTCGTTTCCTCCGAT
********************************************************************************************************************((((.((((((.(((..((...))..))))))))))).))........((((..(((((........)))))...))))....*************************************************** 		Read size # Mismatch Hit Count Total Norm Total M025
embryo
 M024
male body		 M023
head
 SRR902009
testis
 GSM343915
embryo
 M053
female body
 SRR553488
RT_0-2 hours eggs
 SRR553487
NRT_0-2 hours eggs
 SRR553486
Makindu_3 day-old ovaries
 SRR553485
Chicharo_3 day-old ovaries
 SRR618934
dsim w501 ovaries
................................................................................................................................................................................CATCGAATCTAGAATCTGACAGA................................................... 23 0 1 3.00 3 2 1 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................ATCTAGAATCTGACAGAGA................................................. 19 0 1 2.00 2 0 2 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................CGAATCTAGAATCTGACAGA................................................... 20 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................ATCTGACAGAGAATTTAAGCTAAGCAC.................................. 27 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................AGCATCGAATCTAGAATCTGACAGAGA................................................. 27 0 1 2.00 2 0 2 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................TCTGACAGAGAATTTAAG.......................................... 18 0 1 2.00 2 0 0 2 0 0 0 0 0 0 0 0
........................................................................................................................................................................................CTAGAATCTGACAGAGAA................................................ 18 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0
......................CCTGGGACTGCATCAAACAGACT............................................................................................................................................................................................................. 23 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................TCTGACAGAGAATTTAAGCTAAGCACC................................. 27 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................ATCTAGAATCTGACAGAGAATTTAAGC......................................... 27 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................AGCATCGAATCTAGAATCTGG....................................................... 21 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................CATCGAATCTAGAATCTGACAGAGAA................................................ 26 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................CATCGAATCTAGAATCTGACA..................................................... 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
...........................................CTTGGAGGTACGAGCGCATGCGA........................................................................................................................................................................................ 23 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................AGAGCATCGAATCTAGAATCTGAC...................................................... 24 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
....................CACCTGGGACTGCATCAAACA................................................................................................................................................................................................................. 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
....................................................................................................................CTGCATGGTCATGCTGATCTG................................................................................................................. 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................GAATCTAGAATCTGACAGAGA................................................. 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
....................................AAACAGACTTGGAGGTACG................................................................................................................................................................................................... 19 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
...............................................................................................................................TGCTGATCTGGGAGAGGCTGA...................................................................................................... 21 1 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0
........................TGGGACTGCATCAGGCGGACTT............................................................................................................................................................................................................ 22 3 3 1.00 3 0 0 0 3 0 0 0 0 0 0 0
.........................................................................................................................................................................................TAGAATCTGACAGCGAAT............................................... 18 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................TAGAATCTGACAGAGAATTTAAGCTAAG..................................... 28 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0
..................GGCACCTGGGACTGCATCAAACAGA............................................................................................................................................................................................................... 25 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0
............................................................................................................................................................................AGAGCATCGAATCTAGAATCTGACAGA................................................... 27 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................TATTAGTACTAGAGCATCGAA................................................................... 21 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0
................................................................................................................................................................................CATCGAATCTAGAATCTGACAGAG.................................................. 24 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0
..................................................GGACGAGCGCATGCGA........................................................................................................................................................................................ 16 1 4 1.00 4 0 0 0 0 0 0 1 1 2 0 0
...................................................................................................................................................................ATTAGTACTAGAGCATCGAAT.................................................................. 21 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0
.........................................................................................................ACGCCCAACATCTGCATGGT............................................................................................................................. 20 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0
................................................................................................................ACCTCTGCATGATTATGCTGA..................................................................................................................... 21 3 3 1.00 3 0 0 0 0 0 0 0 1 0 2 0
...................................................................GTTTCTATAAGGGCCTGGT.................................................................................................................................................................... 19 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0
.................................................................................................................................CTGATCTGGGAGAAGCTGACCAGC................................................................................................. 24 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................CTAGAATCTGGCAGAG.................................................. 16 1 4 0.50 2 0 0 0 0 0 0 0 2 0 0 0
............................................................................................................................TCATGCTGATCCGGGA.............................................................................................................. 16 1 2 0.50 1 0 0 0 0 0 0 0 0 1 0 0
....................................................................................................................................................................TTGGTGCTAGAGCGTCGAATC................................................................. 21 3 2 0.50 1 0 0 1 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................AATCTAGAATCTGACAGG................................................... 18 1 2 0.50 1 0 0 0 0 0 0 0 0 0 1 0
........................................................................................................................................................................................CTAGAATCTGGCAGAGG................................................. 17 2 15 0.20 3 0 0 0 0 0 0 0 3 0 0 0
...........................................................................................................................................................................TAGAGCACCGAATCT................................................................ 15 1 5 0.20 1 0 0 0 0 0 0 0 0 0 0 1
......................................ACAGTCTTGGAGGTA..................................................................................................................................................................................................... 15 1 6 0.17 1 0 0 0 0 0 0 0 0 1 0 0
...............................................................................GCCTGGAGCCGTACCTGTT........................................................................................................................................................ 19 3 20 0.15 3 0 0 0 0 0 0 0 0 0 0 3
..............................................................................GGCCTGGAGCCGTACCTGTT........................................................................................................................................................ 20 3 10 0.10 1 0 0 0 0 0 0 0 0 0 0 1
...............................................................................GCCTGGAGCCGTACCTG.......................................................................................................................................................... 17 2 14 0.07 1 0 0 0 0 0 0 0 0 0 0 1
............................................................................................................................TCATCCTGATCTCGGA.............................................................................................................. 16 2 20 0.05 1 0 0 0 0 0 0 1 0 0 0 0
..........................................................GCATGCGAGGGTTCGA................................................................................................................................................................................ 16 2 20 0.05 1 0 0 0 0 0 0 1 0 0 0 0

Anti-sense strand reads

GTGGTAGTGGCGATGTTGCCGTGGACCCTGACGTAGTTTGTCTGAACCTCCATGCTCGCGTACGCTCCAAAGATATTCCCGGACCACGGGATGGACCAGGTGCAGTGCGGGTTGTAGACGTACCAGTACGACTAGACCCTCTTCGACTGGTCGATCTACCTCATAATCATGATCTCGTAGCTTAGATCTTAGACTGTCTCTTAAATTCGATTCGTGGATCTTATGTGCTTAGAAAGAGCAAAGGAGGCTA
***************************************************((((.((((((.(((..((...))..))))))))))).))........((((..(((((........)))))...))))....******************************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553485
Chicharo_3 day-old ovaries
 SRR902009
testis
 SRR618934
dsim w501 ovaries
 SRR553486
Makindu_3 day-old ovaries
 SRR553488
RT_0-2 hours eggs
 M024
male body
.....................TGGACCCTGACGTAGT..................................................................................................................................................................................................................... 16 0 1 1.00 1 1 0 0 0 0 0
........................................................................................................GTGCGGGTTGTAGACGTGCCA............................................................................................................................. 21 1 1 1.00 1 0 1 0 0 0 0
..................................AGTCTGTCTGAACCCACATG.................................................................................................................................................................................................... 20 3 3 0.33 1 0 0 0 1 0 0
...........................................................................................................CGGGTTGTAGATGTACCGGT........................................................................................................................... 20 2 4 0.25 1 0 0 0 0 0 1
....................................................................................................................GGCGTACCAGTACGA....................................................................................................................... 15 1 7 0.14 1 0 0 0 0 1 0
............................TGAGGTAGTTTGTCTG.............................................................................................................................................................................................................. 16 1 8 0.13 1 0 0 1 0 0 0
.....AGTGGCGATGTGGCCC..................................................................................................................................................................................................................................... 16 2 19 0.11 2 0 0 0 0 2 0
...............................................................................................................................................................................TGTAGCGTAGATCTTAG.......................................................... 17 2 15 0.07 1 0 0 1 0 0 0
..................................................................................ACCACCGGATGGACC......................................................................................................................................................... 15 1 17 0.06 1 0 0 1 0 0 0
..............................ACCTAGTATGTCTGAA............................................................................................................................................................................................................ 16 2 20 0.05 1 0 0 1 0 0 0
.................................................CCATGCTCTGGTACGCT........................................................................................................................................................................................ 17 2 20 0.05 1 0 0 0 0 1 0
........................ACCCTGACCTAGTATG.................................................................................................................................................................................................................. 16 2 20 0.05 1 0 0 1 0 0 0

Generated: 04/24/2015 at 01:46 AM