dsi_5196

AGTGGCACGACCATTGCGCCGCCACCGCCCAGTAGTTTGCTGGGCGGTAACAGCAACACGAGCTTCTCCACGAACAACAACAGCAACCACGCGCTCAGCTCGACGCACGGCAGCTTGGGCCCGGGCGGTCAGGGCACCAATTGCAGCAACGATCTGATGGCCACCGGTGGCGGCAACTCCCGCGGCGGTTCCTCCCTCAGCCTGGGCATCAACTCCTCCAGTGCGGCGGCGTTGCAGCACCAGCATCAAC ************************************************.........(((((...((.((..........((..((((((..((((.(((..((...((((.((((((((.........)))).)))))))).))..))).))))..)).....))))..))......)).)).))))).........************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M025 embryo	GSM343915 embryo	SRR553488 RT_0-2 hours eggs	SRR618934 dsim w501 ovaries	SRR902009 testis
....................................................................................................................................................ACGATCTGATGGCCACCGGTGGC...............................................................................	23	0	1	1.00	1	0	1	0	0	0
...............................GTAGTTTGCTGGGCGGTAAC.......................................................................................................................................................................................................	20	0	1	1.00	1	1	0	0	0	0
...................................................................................................................................................................................................................ACTCCCCCAGTTCGGCGGCTTT.................	22	3	2	0.50	1	0	0	1	0	0
................................................................................................................................................AGCAGCGATCTGATGACTA.......................................................................................	19	3	20	0.05	1	0	0	0	0	1
.......................................CCGGGCGGTAACACCA...................................................................................................................................................................................................	16	2	20	0.05	1	0	0	0	1	0

TCACCGTGCTGGTAACGCGGCGGTGGCGGGTCATCAAACGACCCGCCATTGTCGTTGTGCTCGAAGAGGTGCTTGTTGTTGTCGTTGGTGCGCGAGTCGAGCTGCGTGCCGTCGAACCCGGGCCCGCCAGTCCCGTGGTTAACGTCGTTGCTAGACTACCGGTGGCCACCGCCGTTGAGGGCGCCGCCAAGGAGGGAGTCGGACCCGTAGTTGAGGAGGTCACGCCGCCGCAACGTCGTGGTCGTAGTTG ************************************************.........(((((...((.((..........((..((((((..((((.(((..((...((((.((((((((.........)))).)))))))).))..))).))))..)).....))))..))......)).)).))))).........************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR902009 testis	SRR618934 dsim w501 ovaries	O001 Testis	O002 Head	SRR553488 RT_0-2 hours eggs	SRR553485 Chicharo_3 day-old ovaries	SRR553487 NRT_0-2 hours eggs	SRR553486 Makindu_3 day-old ovaries	M024 male body
...............................................ATTGACGGTGTGCTTGAAGA.......................................................................................................................................................................................	20	3	8	19.00	152	152	0	0	0	0	0	0	0	0
...............................................ATTGACGGTGTGCTTGAAGAG......................................................................................................................................................................................	21	3	5	13.80	69	69	0	0	0	0	0	0	0	0
...............................................ATTGACGGTGTGCTTGAAGAGG.....................................................................................................................................................................................	22	3	3	7.33	22	22	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................AGTCGGACCCGTCGTTGATT..................................	20	3	15	2.00	30	0	1	14	14	0	0	1	0	0
................................................................................................................................................................................................AGAGAGTCGGACCCGTCGTTG.....................................	21	2	1	1.00	1	0	1	0	0	0	0	0	0	0
.......................................................................................GTGCTAGAGTCGAGCTGCGT...............................................................................................................................................	20	2	2	0.50	1	0	0	0	0	1	0	0	0	0
...............................................ATTGACGGTGTGCTTGAAG........................................................................................................................................................................................	19	3	20	0.40	8	8	0	0	0	0	0	0	0	0
...............................................TTTGTCGGTGTGCTTGAAGAG......................................................................................................................................................................................	21	3	3	0.33	1	1	0	0	0	0	0	0	0	0
................................................TTGACGGTGTGCTCGAAGAGGAG...................................................................................................................................................................................	23	3	4	0.25	1	1	0	0	0	0	0	0	0	0
.................................................................GAGGTGCTTGTTCTTG.........................................................................................................................................................................	16	1	5	0.20	1	0	0	0	0	0	1	0	0	0
.................................................TGTCGGTGTGCTTGAAGAG......................................................................................................................................................................................	19	2	5	0.20	1	1	0	0	0	0	0	0	0	0
..........GGTAAGGCGGCGCTGGCG..............................................................................................................................................................................................................................	18	2	7	0.14	1	0	0	0	0	0	1	0	0	0
..............................................................................TTGTCCTTGGCGCGCGA...........................................................................................................................................................	17	2	7	0.14	1	0	0	0	0	1	0	0	0	0
...............................................ATTATCGGTGTGCTTGAAGA.......................................................................................................................................................................................	20	3	7	0.14	1	1	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................AGGGAACGCCGCCGCCACG...............	19	3	20	0.10	2	0	2	0	0	0	0	0	0	0
...................................................................................................................................................................................................................TGAGGAGGTCACGCG........................	15	1	14	0.07	1	0	0	0	0	0	0	0	1	0
................................................TTGGCGGTGTGCTTGAAGAG......................................................................................................................................................................................	20	3	14	0.07	1	1	0	0	0	0	0	0	0	0
..................................................................AGGTGCTTGTTCTTG.........................................................................................................................................................................	15	1	15	0.07	1	0	1	0	0	0	0	0	0	0
................................................................................................................................................ACGTTGCTAGTCTACCG.........................................................................................	17	2	17	0.06	1	0	1	0	0	0	0	0	0	0
.....................................................................................................CTGCGTGCCATCGAAGCG...................................................................................................................................	18	3	19	0.05	1	0	0	0	0	0	0	1	0	0
.........CGGTAAGGCGGCGCTGGCG..............................................................................................................................................................................................................................	19	3	20	0.05	1	0	0	0	0	0	0	0	0	1
.....................................AGAACCCGCCATAGTCGT...................................................................................................................................................................................................	18	3	20	0.05	1	0	0	0	0	1	0	0	0	0

Species	Coordinate	ID	Alignment
droSim2	x:9975968-9976217 -	dsi_5196	AGTGGCACGA-----------------------C--------------------C-ATTGCG---------------CCGCCACCGCC---CAGTAGTTTGCTGGGCGGTAACAGCAACACGAGCTTCTCCACGAACAACAACAGCAACCACGCGCTCAGCTCGACGCACGG---CAGCTTGGGCCCGG------GCG------GTCAGGGCACCAATTG---CAGCAACGATCTGATGG-C--C------------------------------------------ACCGG---------------TGGCGGCAACTCCCGCGGCGGTTCCTCCCT-------------CAGCCTGGGCATCAACTCCTCCAGTGCGGCGG---CGT------------------------------------------TGCAGCAC------CAGCAT------CAAC
droSec2	scaffold_15:1215486-1215735 -		AGTGCCACGA-----------------------C--------------------C-ATTGCG---------------CCGCCACCGCC---CAGTAGTTTGCTGGGCGGTAACAGCAACACGAGCTTCTCCACGAACAACAACAGCAACCACGCGCTCAGCTCGACGCACGG---CAGCTTGGGCCCGG------GCG------GTCAGGGCACCAATTG---CAGCAACGATCTGATGG-C--C------------------------------------------ACCGG---------------TGGCGGCAACTCCCGCGGAGGTTCCTCCCT-------------CAGCCTGGGCATCAACTCCTCCAGTGCGGCGG---CGT------------------------------------------TGCAGCAC------CAGCAT------CAAC
dm3	chrX:10511128-10511377 -		AGTGCCACGC-----------------------C--------------------C-ATAGCG---------------CCGCCACCGCC---AAGTAGCTTGCTGGGCGGTAACAGCAACACAAGCTTCTCCACGAACAACAACAGCAACCATGCGCTAAGCTCGACGCACGG---CAGCTTGGGTCCGG------GCG------GACAGGGCACCAATTG---CAGCAACGATCTGATGG-C--C------------------------------------------ACCGG---------------TGGCGGTAACTCCCGCGGAGGTTCCTCCCT-------------CAGCCTGGGCATCAACTCATCCAGTGCAGCGG---CGC------------------------------------------TGCAGCAC------CAGCAT------CAGC
droEre2	scaffold_4690:4616698-4616947 +		AGTGCCACGC-----------------------C--------------------C-ATTGCG---------------CCGCCACCGCC---CAGTAGTTTGCTGGGCGGCAACAGCAACACGAGCTTCTCCACGAACAACAACAGCAACCATGCGCTCAGCTCGACGCACGG---CAGCTTGGGCCCGG------GCG------GTCAGGGCACCAATTG---CAGCAACGACCTGATGG-C--C------------------------------------------ACCGG---------------TGGCGGCAACTCCCGCGGAGGCTCCTCCCT-------------CAGCCTGGGCATCAACTCGTCCAGTGCGGCGG---CAC------------------------------------------TGCAGCAC------CAGCAT------CAGC
droYak3	X:19080137-19080393 -		TG--CCACGC-----------------------C--------------------C-ATTGCG---------------CCGCCACCGCC---CAGTAGTTTGCTGGGCGGTAACAGCAACACGAGCTTCTCCACGAACAACAACAGCAACCACGCGCTCAGCTCTACGCACGG---CAGCTTGGGCGCCG------GCG------GTCAGGGCACCAATTG---CAGCAACGATCTGATGG-C--C------------------------------------------ACCGG------------TGGTGGTGGCAACTCCCGCGGCGGTTCCTCTTT-------------AAGTCTGGGCATCAACTCCTCCAGTGCGGCGG---CAC------------------------------------------TGCAGCAT------CAGCATCAGCAGCAAC
droEug1	scf7180000409538:186628-186868 +		AATGCCACGC-----------------------C--------------------C-ATTGCA---------------CAGCCACCGCC---CAGTAGTTTATTGGGCGGCAACAGCAACACCAGCTTCTCTACCAATAACAACAGCAACCATGCCCTAAGCTCCACGCACGG---TAGCTTGGGGGCGG------GTG------GTCAGGGAACAAATTG---TAGTAATGATCTGTTGG-C--C------------------------------------------GCCGG---------------TGGCGGTAATTCCCGAGGCGGTTCGTCTCT-------------GAGCCTGGGCATGAACCCCTCCAGTGCCGCTA------------------------------------------------TGC------------AGCAA------CAGC
droBia1	scf7180000302126:3411449-3411691 -		C-------GC-----------------------C--------------------C-ATTGCC---------------CCGCCCCCGCC---CAGTAGCCTGCTGGGCGGCAACAGCAACACCAGCTTCTCCACCAACAACAACAGCAACCACGCCCTCAGCTCCACGCACGG---CAGCCTGGGGGCGG------GCG------GTCAGGGCACGAATTG---CAGCAACGATCTGCTGG-C--C------------------------------------------GGCGG---------------CGGCGGCAACTCCCGCGGAGGTTCCTCCCT-------------GGGCATGGCCATGAACGC------TGCCTCGCTGCAGC---------------------------------------AGCAGCAGCAG------CAACAT------CAGC
droTak1	scf7180000415394:328745-328989 -		C-----ACGC-----------------------C--------------------C-ATTGCC---------------CCGCCTCCGCC---CAGTAGCCTGCTGGGCGGCAACAGCAACACCAGCTTCTCCACGAACAACAACAGCAACCATGCCCTCAGTTCGACGCACGG---CAGCCTGGGGGCGG------GTG------GCCAGGGCACCCAGTG---CAGCAACGATCTGATGG-C--C------------------------------------------GCCAG------------TGGAGGCGGTAATTCCCGCGGCGGCTCTTCCCT-------------CGGAATGGGCATCAACCCCTCCAGTGCGGCGC------------------------------------------------TGCAGCAG------AAACAT------CAGC
droEle1	scf7180000491087:108696-108954 +		AATGCCACGC-----------------------C--------------------C-ATTGCA---------------CCGCCACCGCC---CAGCAGCTTGCTCGGCGGCAACAGCAACACCAGCTTCTCCACCAACAACAACAGCAACCACGCCCTAAGCTCCACGCACGG---TAGCCTGGGGGCGG------GCG------GTCAGGGCACGAATTG---CAGCAACGATCTGTTGA-C--C------------------------------------------ACCGG---------------CGGTGGGAATTCCCGAGGCGGTTCATCAAT-------------GGGTATGGGCGTGAACGCCTCCAGTGCATCGCTGTCGT------------------------------------------TGCAGCAA------CAGCAACAGAATGCCC
droRho1	scf7180000780277:35338-35585 -		TG--CCACGC-----------------------C--------------------C-ATTGCC---------------CCGCCACCGCC---CAGTAGTTTGCTCGGCGGCAACAGCAACACCAGCTTCTCCACCAACAACAACAGCAACCACGCCCTCAGCTCGACGCACGG---CAGCTTGGGGGCGG------GCG------GTCAGGGCACAAATTG---CAGCAACGATCTGTTGA-C--C------------------------------------------ACCGG---------------TGGCGGCAATTCCCGAGGAGGTTCATCCCT-------------GGGCCTGGGGATCAACGCCTCCAATGCGTCGA---TGT------------------------------------------CACTGCAG------CAACAG------CAAC
droFic1	scf7180000454050:471166-471412 -		G---CCACGC-----------------------C--------------------C-ATTGCA---------------CCGCCACCGCC---GAGTAGTTTGCTGGGCGGCAACAGCAACACCAGCTTCTCGACCAACAACAACAGCAACCACGCCCTCAGCTCGACGCACGG---CAGCATGGGGGCGG------GCG------GTCAGGGCACGAACTG---CAGCAACGATCTGCTGG-C--C------------------------------------------GCCGG---------------AGGAGGAAACTCCCGGGGAGGTTCCTCCTT-------------GGGCCTCGGAATTGGAGCCTCCAGCGCGGCAC---TGC------------------------------------------AGCAACAC------CAGCAG------CAGC
droKik1	scf7180000302698:593730-594030 +		GGTGCCCCTTTGCCGGCGTCTGCCGCTCAACA-G--------------------C---A--G---------------CAGCCAGGACC---CAGCAGCCTGCTGGGCGGCAACAGCAACACGAGCTTCTCCACAAACAACAACAGCAACCACGCCCTCAGCTCCACCCACGGCGGCAGCTCGGT---GGGCGGTGGTAGTGGACCAGGTGGCGTTGGCTG---TTGCAATGACCTCATGG-G--A------------------------------------------GCGGT---ATCATCGGGTGGTGGTGGAAACTCACGTGGAGGCTCCTCTTT-------------GGGTGGACTTGTGGGTGG------CTCGACGC---TGC---------------------------AGCAGCATCAGCAG------CAGCAGCAGCAGCAA------CAAC
droAna3	scaffold_13117:4521120-4521376 -		AGCAGCA----------------------ACATC--------------------G-ATCCCC---------------CCACCACCGCC---CAGCAGTCTCCTGGGCGGCAACAGCAACACCAGCTTCTCGACGCAGAA---CAGCAACCATGGCGG------------------------------------------------------------GGG---CGGCAATGATCTGGGGGGCGGTAGTTCGAGGGGCGGTT------CATCGCTGGGCGGGATGGGCGGTGGCGG------------------------------------------TGGCAGTGGCTCG-------CATCTGACCTCAT---------CGCAGCAGCAGCAGCAGCAGCAACATCACCAACAGCAGCAACATCACCAGCAACAGCAC------TCGCAC------AACC
droBip1	scf7180000396022:3028-3265 -		AGCAGCG----------------------GCGGC--------------------G-ATCCCC---------------CCACCCCCGCC---CAGCAGTCTCCTGGGCGGCAACAGCAACACCAGCTTCTCGACGCAGAA---CAGCAACCACGGTGT------------------------GGGCGGCG------GGG---------GCGGGGCCAGCAG---CGGCAACGACCTGGGGG-CGGTAGTTCGCGGGGCGGCT------CATCGCTGGGCGGCATGGGCGG------------------------------------------------GGGCAGTGGCTCG-------CACCTGACCTCGT---------------CGC---------------------------AGCAGCAGCAGCAACACCAGCAG------CCACAT------CACC
dp5	XL_group1e:5881235-5881475 -		GGTGGTG----------------------GCG-C--------------------C-AATGTCCCTCAAATGTCGATGGTGCCCGCCCC---GAGCAGCCTCATTGGCGGCAACAGCAACACCAGCTTCTCCACCAACAACAACAGTAACCATGCCCTCAGCTCGACGCACGG---CAGCACGGGCGGCG------GGG------CGGGTGGTGCCAACTG---CAGCAACGATCTGGCGG-C--CAGCTCTC---------GCGGTGGAGCG------------------------------------------------------------------GG----------CAGTGTGGGCCCCACCTCC---------------CAGC---------------------------------------AG------CAGCAGCAGCCACAC------CAAC
droPer2	scaffold_21:838650-838890 -		GGTGGTG----------------------GCG-C--------------------C-AATGTCCCTCAAATGTCGATGGTGCCCGCCCC---GAGCAGCCTCATTGGCGGCAACAGCAACACCAGCTTCTCCACCAACAACAACAGTAACCATGCCCTCAGCTCGACGCACGG---CAGCACGGGCGGCG------GGG------CGGGTGGTGCCAACTG---CAGCAACGATCTGGCGG-C--CAGCTCTC---------GCGGTGGAGCG------------------------------------------------------------------GG----------CAGTGTGGGCCCCACCTCC---------------CAGC---------------------------------------AG------CAGCAGCAGCCACAC------CAAC
droWil2	scf2_1100000003625:662-898 +		AGCAACA--A--------------------CAAC--------------------T-GCAGCA---------------GCAACAACA-A---CAGCAGCAACAACAACAGCAGCAGCAACAACAGCATCAGCAACAGCAACAGCAGCAACGAATGCAACAGCAACAGCAACAG------------CAACA------GCA------ACAGCAGCAACAATTG---CAGCAACAACAGCAACA-G--C------------------------------------------AGCAA------------CAATGGCAGCAACAACAACAGCAACAACAACTG-------------CAGC------AGCAACAAC----------------------------------------------AACAGCAGCAACAACAACAGCAG------CAGCAA------CAAC
droVir3	scaffold_12970:7509134-7509404 +		GGCAGCATGG----------------------GCCTCGGCATTGGCGGCGGCAGCAACAGCA---------------TTG-CTGCGCC---GAGCAGCCTCATCGGCGGCAACAGCAACACCAGCTTTTCAACGAACAACAACAGCAACCATGCGCTCAGCTCGACTTTGGG---CAGC------------------------------GGCATTAACTGTGGCAGCAGCGAGCAGCAG--------CCCTC---------GCGTCACAGCAGCA------------GCTCG---------------CATCAGCAACACCAGCAGCAGCACCCGCAG-------------CAGCAGCAGCAGCAGCACCAACAG--CAGCAG---C-----------------------------------------AACTGCAACAT------CAGCAA------CAGC
droMoj3	scaffold_6482:2224781-2225015 -		AATGGTG----------------------GCA-G--------------------CAACAGCT-TA------------C---CAGCGCCGAGCAACAGCATTATTGGTGGCAACAGCAACACTAGCTTTTCCACCAACAACAACAGCAATCATGCGCTCAGTTCGACACTCTG---CAGCGTCA------------------------------------------TCAACGAGCAGC-AG-CAGCAGCTATC---------GCGGCACAGCGGCAACTCGC------ATCAC---------------CATCAACAACAGCC-----------------------------------------------------------GC---AAC---------------AGCAAAATCAGCATCAACAGCAGCAGCACCACCAC------CACCAC------CACT
droGri2	scaffold_15500:1067-1306 -		AGCGGCA----------------------GCAGC--------------------A-GCAG------------------CAGCAGCAG----CAGCAGCAGCGGCAGCAGCAGCAGCAGCAGGAGCGGCAGCAGCAGCAGCAGCAGCAGCAGC---AGCAGCAGCAGCAGTAG---CAGCATCAGCAGCG------GCA------GCAGCAGCAGCAGCGG---CAGCAGCAGCAGCAGCA-G--C------------------------------------------GGCAG------------CAGCAGCAGCAGCAGC------GGCAGCAGCAG-------------CAGCAGCAGCAGCAGCAGC----------------------------------------------GGCAGCAGCAGCAGCGGCAGCAG------CAGCAG------CAGC

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droSim2

AGTGGCACGA-----------------------C--------------------C-ATTGCG---------------CCGCCACCGCC---CAGTAGTTTGCTGGGCGGTAACAGCAACACGAGCTTCTCCACGAACAACAACAGCAACCACGCGCTCAGCTCGACGCACGG---CAGCTTGGGCCCGG------GCG------GTCAGGGCACCAATTG---CAGCAACGATCTGATGG-C--C------------------------------------------ACCGG---------------TGGCGGCAACTCCCGCGGCGGTTCCTCCCT-------------CAGCCTGGGCATCAACTCCTCCAGTGCGGCGG---CGT------------------------------------------TGCAGCAC------CAGCAT------CAAC	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
....................................................................................................................................................................................................................................ACGATCTGATGG-C--C------------------------------------------ACCGG---------------TGGC.....................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
.............................................................................................GTAGTTTGCTGGGCGGTAAC...........................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droSec2

AGTGCCACGA-----------------------C--------------------C-ATTGCG---------------CCGCCACCGCC---CAGTAGTTTGCTGGGCGGTAACAGCAACACGAGCTTCTCCACGAACAACAACAGCAACCACGCGCTCAGCTCGACGCACGG---CAGCTTGGGCCCGG------GCG------GTCAGGGCACCAATTG---CAGCAACGATCTGATGG-C--C------------------------------------------ACCGG---------------TGGCGGCAACTCCCGCGGAGGTTCCTCCCT-------------CAGCCTGGGCATCAACTCCTCCAGTGCGGCGG---CGT------------------------------------------TGCAGCAC------CAGCAT------CAAC	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
No Reads

dm3

AGTGCCACGC-----------------------C--------------------C-ATAGCG---------------CCGCCACCGCC---AAGTAGCTTGCTGGGCGGTAACAGCAACACAAGCTTCTCCACGAACAACAACAGCAACCATGCGCTAAGCTCGACGCACGG---CAGCTTGGGTCCGG------GCG------GACAGGGCACCAATTG---CAGCAACGATCTGATGG-C--C------------------------------------------ACCGG---------------TGGCGGTAACTCCCGCGGAGGTTCCTCCCT-------------CAGCCTGGGCATCAACTCATCCAGTGCAGCGG---CGC------------------------------------------TGCAGCAC------CAGCAT------CAGC	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
...........................................................................................................................................................................................................................G---CAGCAACGATCTGATGG-C--C------------------------------------------A............................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................TCTGATGG-C--C------------------------------------------ACCGG---------------TGGCGGTAA................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................CGGAGGTTCCTCCCT-------------CAGCCTGGGCAT..................................................................................................	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.GTGCCACGC-----------------------C--------------------C-ATAGCG---------------CCG............................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0

droEre2

AGTGCCACGC-----------------------C--------------------C-ATTGCG---------------CCGCCACCGCC---CAGTAGTTTGCTGGGCGGCAACAGCAACACGAGCTTCTCCACGAACAACAACAGCAACCATGCGCTCAGCTCGACGCACGG---CAGCTTGGGCCCGG------GCG------GTCAGGGCACCAATTG---CAGCAACGACCTGATGG-C--C------------------------------------------ACCGG---------------TGGCGGCAACTCCCGCGGAGGCTCCTCCCT-------------CAGCCTGGGCATCAACTCGTCCAGTGCGGCGG---CAC------------------------------------------TGCAGCAC------CAGCAT------CAGC	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
No Reads

droYak3

TG--CCACGC-----------------------C--------------------C-ATTGCG---------------CCGCCACCGCC---CAGTAGTTTGCTGGGCGGTAACAGCAACACGAGCTTCTCCACGAACAACAACAGCAACCACGCGCTCAGCTCTACGCACGG---CAGCTTGGGCGCCG------GCG------GTCAGGGCACCAATTG---CAGCAACGATCTGATGG-C--C------------------------------------------ACCGG------------TGGTGGTGGCAACTCCCGCGGCGGTTCCTCTTT-------------AAGTCTGGGCATCAACTCCTCCAGTGCGGCGG---CAC------------------------------------------TGCAGCAT------CAGCATCAGCAGCAAC

Size

Hit Count

Total Norm

Total

M026
Head

M043
Female-body

M056
Embryo

V046
Embryo

V052
Head

V058
Head

V120
Male-body

SRR1275488
Male larvae

SRR1275486
Male prepupae

SRR1275484
Male prepupae

GSM1528802
follicle cells

No Reads

droEug1

AATGCCACGC-----------------------C--------------------C-ATTGCA---------------CAGCCACCGCC---CAGTAGTTTATTGGGCGGCAACAGCAACACCAGCTTCTCTACCAATAACAACAGCAACCATGCCCTAAGCTCCACGCACGG---TAGCTTGGGGGCGG------GTG------GTCAGGGAACAAATTG---TAGTAATGATCTGTTGG-C--C------------------------------------------GCCGG---------------TGGCGGTAATTCCCGAGGCGGTTCGTCTCT-------------GAGCCTGGGCATGAACCCCTCCAGTGCCGCTA------------------------------------------------TGC------------AGCAA------CAGC	Size	Hit Count	Total Norm	Total
No Reads

droBia1

C-------GC-----------------------C--------------------C-ATTGCC---------------CCGCCCCCGCC---CAGTAGCCTGCTGGGCGGCAACAGCAACACCAGCTTCTCCACCAACAACAACAGCAACCACGCCCTCAGCTCCACGCACGG---CAGCCTGGGGGCGG------GCG------GTCAGGGCACGAATTG---CAGCAACGATCTGCTGG-C--C------------------------------------------GGCGG---------------CGGCGGCAACTCCCGCGGAGGTTCCTCCCT-------------GGGCATGGCCATGAACGC------TGCCTCGCTGCAGC---------------------------------------AGCAGCAGCAG------CAACAT------CAGC	Size	Hit Count	Total Norm	Total
No Reads

droTak1

C-----ACGC-----------------------C--------------------C-ATTGCC---------------CCGCCTCCGCC---CAGTAGCCTGCTGGGCGGCAACAGCAACACCAGCTTCTCCACGAACAACAACAGCAACCATGCCCTCAGTTCGACGCACGG---CAGCCTGGGGGCGG------GTG------GCCAGGGCACCCAGTG---CAGCAACGATCTGATGG-C--C------------------------------------------GCCAG------------TGGAGGCGGTAATTCCCGCGGCGGCTCTTCCCT-------------CGGAATGGGCATCAACCCCTCCAGTGCGGCGC------------------------------------------------TGCAGCAG------AAACAT------CAGC	Size	Hit Count	Total Norm	Total
No Reads

droEle1

AATGCCACGC-----------------------C--------------------C-ATTGCA---------------CCGCCACCGCC---CAGCAGCTTGCTCGGCGGCAACAGCAACACCAGCTTCTCCACCAACAACAACAGCAACCACGCCCTAAGCTCCACGCACGG---TAGCCTGGGGGCGG------GCG------GTCAGGGCACGAATTG---CAGCAACGATCTGTTGA-C--C------------------------------------------ACCGG---------------CGGTGGGAATTCCCGAGGCGGTTCATCAAT-------------GGGTATGGGCGTGAACGCCTCCAGTGCATCGCTGTCGT------------------------------------------TGCAGCAA------CAGCAACAGAATGCCC	Size	Hit Count	Total Norm	Total
No Reads

droRho1

TG--CCACGC-----------------------C--------------------C-ATTGCC---------------CCGCCACCGCC---CAGTAGTTTGCTCGGCGGCAACAGCAACACCAGCTTCTCCACCAACAACAACAGCAACCACGCCCTCAGCTCGACGCACGG---CAGCTTGGGGGCGG------GCG------GTCAGGGCACAAATTG---CAGCAACGATCTGTTGA-C--C------------------------------------------ACCGG---------------TGGCGGCAATTCCCGAGGAGGTTCATCCCT-------------GGGCCTGGGGATCAACGCCTCCAATGCGTCGA---TGT------------------------------------------CACTGCAG------CAACAG------CAAC	Size	Hit Count	Total Norm	Total
No Reads

droFic1

G---CCACGC-----------------------C--------------------C-ATTGCA---------------CCGCCACCGCC---GAGTAGTTTGCTGGGCGGCAACAGCAACACCAGCTTCTCGACCAACAACAACAGCAACCACGCCCTCAGCTCGACGCACGG---CAGCATGGGGGCGG------GCG------GTCAGGGCACGAACTG---CAGCAACGATCTGCTGG-C--C------------------------------------------GCCGG---------------AGGAGGAAACTCCCGGGGAGGTTCCTCCTT-------------GGGCCTCGGAATTGGAGCCTCCAGCGCGGCAC---TGC------------------------------------------AGCAACAC------CAGCAG------CAGC	Size	Hit Count	Total Norm	Total
No Reads

droKik1

GGTGCCCCTTTGCCGGCGTCTGCCGCTCAACA-G--------------------C---A--G---------------CAGCCAGGACC---CAGCAGCCTGCTGGGCGGCAACAGCAACACGAGCTTCTCCACAAACAACAACAGCAACCACGCCCTCAGCTCCACCCACGGCGGCAGCTCGGT---GGGCGGTGGTAGTGGACCAGGTGGCGTTGGCTG---TTGCAATGACCTCATGG-G--A------------------------------------------GCGGT---ATCATCGGGTGGTGGTGGAAACTCACGTGGAGGCTCCTCTTT-------------GGGTGGACTTGTGGGTGG------CTCGACGC---TGC---------------------------AGCAGCATCAGCAG------CAGCAGCAGCAGCAA------CAAC	Size	Hit Count	Total Norm	Total
No Reads

droAna3

AGCAGCA----------------------ACATC--------------------G-ATCCCC---------------CCACCACCGCC---CAGCAGTCTCCTGGGCGGCAACAGCAACACCAGCTTCTCGACGCAGAA---CAGCAACCATGGCGG------------------------------------------------------------GGG---CGGCAATGATCTGGGGGGCGGTAGTTCGAGGGGCGGTT------CATCGCTGGGCGGGATGGGCGGTGGCGG------------------------------------------TGGCAGTGGCTCG-------CATCTGACCTCAT---------CGCAGCAGCAGCAGCAGCAGCAACATCACCAACAGCAGCAACATCACCAGCAACAGCAC------TCGCAC------AACC	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
................................................................................................................................................................................................................................................................................CTGGGCGGGATGGGCGGTGGC.......................................................................................................................................................................	21	1	3.00	3	0	0	0	0	0	3
.................................................................................................................................................................................................................................................................................TGGGCGGGATGGGCGGTGG........................................................................................................................................................................	19	1	2.00	2	0	0	0	0	0	2
................................................................................................................................................................................................................................................................................CTGGGCGGGATGGGCGGTGG........................................................................................................................................................................	20	1	2.00	2	0	0	0	0	0	2
................................................................................................................................................................................................................................................................................CTGGGCGGGATGGGCGGTG.........................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	1
.......................................................................................................................................................................................................................................................................................................................................................................................................................................CACCAGCAACAGCAC------TCGCAC------....	21	1	1.00	1	0	1	0	0	0	0
.........................................................................................................................................AA---CAGCAACCATGGCGG------------------------------------------------------------GGG---C............................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	1
.................................................................................................................................................................................................................................................................................................................................................................................................................ACATCACCAACAGCAGCAACA......................................	21	2	0.50	1	1	0	0	0	0	0
................................................................................................................................................................................................................................................................................CTGGGCGGGATGGGCGGTA.........................................................................................................................................................................	19	3	0.33	1	0	0	0	0	0	1
...........................................................................................................................................................................................................................................................................................................................................................................................CGCAGCAGCAGCAGCAGCAGCAAC.........................................................	24	13	0.08	1	0	1	0	0	0	0

droBip1

AGCAGCG----------------------GCGGC--------------------G-ATCCCC---------------CCACCCCCGCC---CAGCAGTCTCCTGGGCGGCAACAGCAACACCAGCTTCTCGACGCAGAA---CAGCAACCACGGTGT------------------------GGGCGGCG------GGG---------GCGGGGCCAGCAG---CGGCAACGACCTGGGGG-CGGTAGTTCGCGGGGCGGCT------CATCGCTGGGCGGCATGGGCGG------------------------------------------------GGGCAGTGGCTCG-------CACCTGACCTCGT---------------CGC---------------------------AGCAGCAGCAGCAACACCAGCAG------CCACAT------CACC	Size	Hit Count	Total Norm	Total
No Reads

dp5

GGTGGTG----------------------GCG-C--------------------C-AATGTCCCTCAAATGTCGATGGTGCCCGCCCC---GAGCAGCCTCATTGGCGGCAACAGCAACACCAGCTTCTCCACCAACAACAACAGTAACCATGCCCTCAGCTCGACGCACGG---CAGCACGGGCGGCG------GGG------CGGGTGGTGCCAACTG---CAGCAACGATCTGGCGG-C--CAGCTCTC---------GCGGTGGAGCG------------------------------------------------------------------GG----------CAGTGTGGGCCCCACCTCC---------------CAGC---------------------------------------AG------CAGCAGCAGCCACAC------CAAC

Size

Hit Count

Total Norm

Total

M022
Male-body

M040
Female-body

M059
Embryo

M062
Head

V043
Embryo

V051
Head

V112
Male-body

SRR902010
Ovary

SRR902011
Testis

SRR902012
CNS imaginal disc

No Reads

droPer2

GGTGGTG----------------------GCG-C--------------------C-AATGTCCCTCAAATGTCGATGGTGCCCGCCCC---GAGCAGCCTCATTGGCGGCAACAGCAACACCAGCTTCTCCACCAACAACAACAGTAACCATGCCCTCAGCTCGACGCACGG---CAGCACGGGCGGCG------GGG------CGGGTGGTGCCAACTG---CAGCAACGATCTGGCGG-C--CAGCTCTC---------GCGGTGGAGCG------------------------------------------------------------------GG----------CAGTGTGGGCCCCACCTCC---------------CAGC---------------------------------------AG------CAGCAGCAGCCACAC------CAAC	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
.............................................................................................................................................................................................................................................................................................................................................................................CTCC---------------CAGC---------------------------------------AG------CAGCAGCAGC...............	20	18	0.06	1	0	0	1	0	0	0

droWil2

AGCAACA--A--------------------CAAC--------------------T-GCAGCA---------------GCAACAACA-A---CAGCAGCAACAACAACAGCAGCAGCAACAACAGCATCAGCAACAGCAACAGCAGCAACGAATGCAACAGCAACAGCAACAG------------CAACA------GCA------ACAGCAGCAACAATTG---CAGCAACAACAGCAACA-G--C------------------------------------------AGCAA------------CAATGGCAGCAACAACAACAGCAACAACAACTG-------------CAGC------AGCAACAAC----------------------------------------------AACAGCAGCAACAACAACAGCAG------CAGCAA------CAAC	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
..................................................................................................................................................................................................................................................................................................AA------------CAATGGCAGCAACAACAACAG.......................................................................................................................................	23	20	0.70	14	0	14	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................AGC------AGCAACAAC----------------------------------------------AACAGCA......................................	19	20	0.20	4	0	0	0	4	0
..........................................................AGCA---------------GCAACAACA-A---CAGCA............................................................................................................................................................................................................................................................................................................................................................................	19	20	0.20	4	0	0	0	4	0
..........................................................................................................................................................................................................................................................................................................................AACAACAACAGCAACAACAACTG-------------..............................................................................................................	23	20	0.20	4	0	4	0	0	0
.................................................................................................................................................................AACAGCAACAG------------CAACA------GCA------ACA.............................................................................................................................................................................................................................................................	22	20	0.20	4	0	1	0	0	3
...................................................................................ACA-A---CAGCAGCAACAACA...................................................................................................................................................................................................................................................................................................................................................................	18	20	0.15	3	0	0	0	3	0
..........................................................................................................................................................................................................................................................................................................................................................................CAACAAC----------------------------------------------AACAGCAGCAACA................................	20	20	0.15	3	0	0	0	3	0
..........................................................................................................................................................................................................................................................................................................................................................................CAACAAC----------------------------------------------AACAGCAGCAAC.................................	19	20	0.15	3	0	0	0	3	0
..................................................................................................................................................................................................................................................................................................AA------------CAATGGCAGCAACAACAACAGC......................................................................................................................................	24	20	0.15	3	0	2	0	1	0
...............................................................................................................................................................................................................................................................................................................................................................................AC----------------------------------------------AACAGCAGCAACAACA.............................	18	20	0.15	3	0	0	0	3	0
..............................................................................CAACAACA-A---CAGCAGCAAC.......................................................................................................................................................................................................................................................................................................................................................................	19	20	0.15	3	0	0	0	3	0
...........................................................................................................................................................AACAGCAACAGCAACAG------------CAACA------.........................................................................................................................................................................................................................................................................	22	20	0.15	3	0	0	0	3	0
..............................................................................CAACAACA-A---CAGCAGCAACA......................................................................................................................................................................................................................................................................................................................................................................	20	20	0.15	3	0	0	0	3	0
....................................................................................................................................................................................................................AACAATTG---CAGCAACAACAGCA...............................................................................................................................................................................................................................	22	20	0.15	3	0	1	0	2	0
............................................................................................................................................................ACAGCAACAGCAACAG------------CAACA------.........................................................................................................................................................................................................................................................................	21	20	0.15	3	0	0	0	3	0
................................................................................................................................................................................................................................AGCAACAACAGCAACA-G--C------------------------------------------AGC..........................................................................................................................................................................	21	20	0.15	3	0	2	0	1	0
.................................................................................................................................................CAACGAATGCAACAGCAACAGCAAC..................................................................................................................................................................................................................................................................................................	25	8	0.13	1	0	1	0	0	0
..............................................................................................................................TCAGCAACAGCAACAGCAGCAACGAA....................................................................................................................................................................................................................................................................................................................	26	9	0.11	1	0	0	0	1	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................CAACAACAACAGCAG------CAGCAA------C...	22	20	0.10	2	0	0	0	2	0
.......................................................................................................................................................................................................................................................................................................................AGCAACAACAACAGCAACAACAACTG-------------..............................................................................................................	26	20	0.10	2	0	2	0	0	0
.................................................................................................CAACAACAACAGCAGCAGCAAC.....................................................................................................................................................................................................................................................................................................................................................	22	20	0.10	2	0	0	0	2	0
......................................................................................................................................................................................................................................AACAGCAACA-G--C------------------------------------------AGCAA------------CAATGG......................................................................................................................................................	23	20	0.10	2	0	2	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................CAACAACAACAGCAG------CAGCAA------CA..	23	20	0.10	2	0	0	0	1	1
...................................................................................................................................................................................................................................AACAACAGCAACA-G--C------------------------------------------AGCAA------------C...........................................................................................................................................................	21	20	0.10	2	0	0	0	2	0
......................................................................................................................................................................................................................................AACAGCAACA-G--C------------------------------------------AGCAA------------CAATGGC.....................................................................................................................................................	24	20	0.10	2	0	2	0	0	0
................................................................................................................................AGCAACAGCAACAGCAGCAACG......................................................................................................................................................................................................................................................................................................................	22	11	0.09	1	0	0	0	1	0
......................................................................................................................CAACAGCATCAGCAACAGCAACAGCAG...........................................................................................................................................................................................................................................................................................................................	27	12	0.08	1	0	0	0	1	0
.......................................................................................................CAACAGCAGCAGCAACAACAGCATCAG..........................................................................................................................................................................................................................................................................................................................................	27	12	0.08	1	0	0	0	1	0
...................................................................................................................CAACAACAGCATCAGCAACAGCAACAG..............................................................................................................................................................................................................................................................................................................................	27	12	0.08	1	0	1	0	0	0
...................................................................................................................CAACAACAGCATCAGCAACAGC...................................................................................................................................................................................................................................................................................................................................	22	14	0.07	1	0	0	0	1	0
...............................................................................................................................................................................................................................................................................................................................................TG-------------CAGC------AGCAACAAC----------------------------------------------AACAGCAGCAACA................................	28	14	0.07	1	0	0	0	1	0
......................................................T-GCAGCA---------------GCAACAACA-A---CAGCAGCAACA......................................................................................................................................................................................................................................................................................................................................................................	28	14	0.07	1	0	0	0	1	0
.........................................................................................................................................................................................................................................................................................................................................AACAACTG-------------CAGC------AGCAACAAC----------------------------------------------AACA.........................................	25	15	0.07	1	0	1	0	0	0
......A--A--------------------CAAC--------------------T-GCAGCA---------------GCAACAACA-A---CA...............................................................................................................................................................................................................................................................................................................................................................................	25	15	0.07	1	0	1	0	0	0
..........................................................................................................................................................................AG------------CAACA------GCA------ACAGCAGCAACAATT.................................................................................................................................................................................................................................................	25	16	0.06	1	0	0	0	1	0
......................................................................................................................CAACAGCATCAGCAACAGC...................................................................................................................................................................................................................................................................................................................................	19	17	0.06	1	0	0	0	1	0
..........................................................................................................................AGCATCAGCAACAGCAACAGCAG...........................................................................................................................................................................................................................................................................................................................	23	17	0.06	1	0	1	0	0	0
.............................................................................................................................ATCAGCAACAGCAACAGCAGCAAC.......................................................................................................................................................................................................................................................................................................................	24	19	0.05	1	0	1	0	0	0
............................................................................................AGCAGCAACAACAACAGCAGCAGCAA......................................................................................................................................................................................................................................................................................................................................................	26	20	0.05	1	0	1	0	0	0
....................................................................................................................................................................................................................................ACAACAGCAACA-G--C------------------------------------------AGCAA------------CA..........................................................................................................................................................	21	20	0.05	1	0	0	0	0	1
....................................................................................................................................................................................................................................................................................................................GGCAGCAACAACAACAGCAACAA.................................................................................................................................	23	20	0.05	1	0	1	0	0	0
................................................................................................................................................................................................................................................................................................................................AACAGCAACAACAACTG-------------CAGC------AGC.................................................................................................	24	20	0.05	1	0	1	0	0	0
...................................................................................................................................................................................................................CAACAATTG---CAGCAACAACAGCAA..............................................................................................................................................................................................................................	24	20	0.05	1	0	0	0	1	0
AGCAACA--A--------------------CAAC--------------------T-GCAGCA---------------GCAA...........................................................................................................................................................................................................................................................................................................................................................................................	23	20	0.05	1	0	1	0	0	0
.................................................................................................................................................................................................................................................................................................CAA------------CAATGGCAGCAACAACAACAG.......................................................................................................................................	24	20	0.05	1	0	0	0	1	0
...............................................................................................AGCAACAACAACAGCAGCAGCAACA....................................................................................................................................................................................................................................................................................................................................................	25	20	0.05	1	0	0	0	1	0
.............................................................................................................................................................................................................................................................................................................................AACAACAGCAACAACAACTG-------------CAG...........................................................................................................	23	20	0.05	1	0	1	0	0	0
...........................................................................................................................................................................................................................G---CAGCAACAACAGCAACA-G--C------------------------------------------AGCA.........................................................................................................................................................................	24	20	0.05	1	0	0	0	1	0
.........................................................................................................................................................................................................................TTG---CAGCAACAACAGCAACA-G--C------------------------------------------AGC..........................................................................................................................................................................	25	20	0.05	1	0	1	0	0	0
....................................................................................................CAACAACAGCAGCAGCAACAACAG................................................................................................................................................................................................................................................................................................................................................	24	20	0.05	1	0	1	0	0	0
...................................................................................................................................................................................................................................................................................................A------------CAATGGCAGCAACAACAACAGCA.....................................................................................................................................	24	20	0.05	1	0	1	0	0	0
.........................................................................................................................................................................................................................TTG---CAGCAACAACAGCAACA-G--C------------------------------------------AG...........................................................................................................................................................................	24	20	0.05	1	0	0	0	1	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGCAACAACAACAGCAG------CAGCAA------....	26	20	0.05	1	0	1	0	0	0
.............................................................A---------------GCAACAACA-A---CAGCAGCAACAA.....................................................................................................................................................................................................................................................................................................................................................................	23	20	0.05	1	0	0	0	1	0
..............................................................................................................................................................................................................................................................................................................................................................................AAC----------------------------------------------AACAGCAGCAACAACAAC...........................	21	20	0.05	1	0	0	0	1	0
.......................................................................................A---CAGCAGCAACAACAACAGCAG............................................................................................................................................................................................................................................................................................................................................................	22	20	0.05	1	0	1	0	0	0
...................................................................................................................................................................................................................................AACAACAGCAACA-G--C------------------------------------------AGCAA------------CAATGGC.....................................................................................................................................................	27	20	0.05	1	0	1	0	0	0
..........................................................................................................................................................................................................................TG---CAGCAACAACAGCAACA-G--C------------------------------------------AGC..........................................................................................................................................................................	24	20	0.05	1	0	1	0	0	0
...................................................................................................................................................................................................................................................................................................................................AGCAACAACAACTG-------------CAGC------AGCAACA.............................................................................................	25	20	0.05	1	0	0	0	1	0
.................................................................................................................................................................................................................................................................................................................AATGGCAGCAACAACAACAGCAACA..................................................................................................................................	25	20	0.05	1	0	1	0	0	0
.......................................................................................................................................................................................................................................................................................................................AGCAACAACAACAGCAACAACAACTG-------------CAG...........................................................................................................	29	20	0.05	1	0	1	0	0	0
....................................................................................................................................................................................................................AACAATTG---CAGCAACAACAGCAA..............................................................................................................................................................................................................................	23	20	0.05	1	0	1	0	0	0
......................................................................................................ACAACAGCAGCAGCAACAACA.................................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	1	0	0	0
..................................................................................AACA-A---CAGCAGCAACAACAAC.................................................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	0	0	1	0
..................................................................................................AACAACAACAGCAGCAGCAA......................................................................................................................................................................................................................................................................................................................................................	20	20	0.05	1	0	0	1	0	0
.............................................................................................GCAGCAACAACAACAGCAGCAGCA.......................................................................................................................................................................................................................................................................................................................................................	24	20	0.05	1	0	0	0	1	0
.......................................................................................................................................................................AACAG------------CAACA------GCA------ACAGCAGC........................................................................................................................................................................................................................................................	21	20	0.05	1	0	1	0	0	0
...............................................................................................................................................................................................................................................A-G--C------------------------------------------AGCAA------------CAATGGCAGCAACAACA...........................................................................................................................................	25	20	0.05	1	0	1	0	0	0
..........................................................................................................................................................................................................................................................................................................................AACAACAACAGCAACAACAACTG-------------CAGC------....................................................................................................	27	20	0.05	1	0	1	0	0	0
...................................................................................................................................................................................................................................................................................................................................AGCAACAACAACTG-------------CAGC------AGCAA...............................................................................................	23	20	0.05	1	0	1	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................AACAGCAGCAACAACAACAGCA.......................	22	20	0.05	1	0	0	0	0	1
.....................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAACAACAACAGCAG------CAGCAA------CA..	25	20	0.05	1	0	0	0	1	0
...................................................................................................................................................................................................................................................................................................................TGGCAGCAACAACAACAGCAACAA.................................................................................................................................	24	20	0.05	1	0	0	0	1	0
...........................................................................................................................................................................................................................................................................................................................................................................AACAAC----------------------------------------------AACAGCAGCAACAACAACAG.........................	26	20	0.05	1	0	0	0	1	0
...............................................................................AACAACA-A---CAGCAGCAACAA.....................................................................................................................................................................................................................................................................................................................................................................	20	20	0.05	1	0	0	0	1	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................GCAACAACAACAGCAG------CAGCA...........	21	20	0.05	1	0	1	0	0	0
...................................................................................................................................................................................................................................................................................................A------------CAATGGCAGCAACAACAACAG.......................................................................................................................................	22	20	0.05	1	0	1	0	0	0
...AACA--A--------------------CAAC--------------------T-GCAGCA---------------GCAACA.........................................................................................................................................................................................................................................................................................................................................................................................	22	20	0.05	1	0	1	0	0	0
.................................................................................................................................................................................................................................................................................................................................ACAGCAACAACAACTG-------------CAGC------A...................................................................................................	21	20	0.05	1	0	1	0	0	0
.........................................................................................................................................................................................................................................AGCAACA-G--C------------------------------------------AGCAA------------CAATGG......................................................................................................................................................	20	20	0.05	1	0	1	0	0	0
........................................................................................................................................................................ACAG------------CAACA------GCA------ACAGCAGCA.......................................................................................................................................................................................................................................................	21	20	0.05	1	0	1	0	0	0
................................................................................................................................................................................................................................................................................................................................AACAGCAACAACAACTG-------------CAGC------AGCAAC..............................................................................................	27	20	0.05	1	0	1	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................AGCAACAAC----------------------------------------------AACAGCAGCAACAA...............................	23	20	0.05	1	0	0	0	1	0
.....................................................................................................................................................................................................................................CAACAGCAACA-G--C------------------------------------------AGCAA------------CAATGGC.....................................................................................................................................................	25	20	0.05	1	0	1	0	0	0
..............................................................................CAACAACA-A---CAGCAGCAACAACAACA................................................................................................................................................................................................................................................................................................................................................................	26	20	0.05	1	0	0	0	1	0
..........................................................................................................................................................CAACAGCAACAGCAACAG------------CAAC................................................................................................................................................................................................................................................................................	22	20	0.05	1	0	0	0	0	1
........................................................................................................................................................................................................................................................................................................................................................................................................................................AACAACAACAGCAG------CAGCAA------....	20	20	0.05	1	0	0	1	0	0
..................................................................................................................................................................................................................................................................................................AA------------CAATGGCAGCAACAACAACAGCA.....................................................................................................................................	25	20	0.05	1	0	0	0	1	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCAACAACAACAGCAG------CAGCA...........	24	20	0.05	1	0	0	0	1	0
....................................................................................................................................................................................................................................ACAACAGCAACA-G--C------------------------------------------AGCAA------------CAATGG......................................................................................................................................................	25	20	0.05	1	0	1	0	0	0
................................................................................................GCAACAACAACAGCAGCAGCAACA....................................................................................................................................................................................................................................................................................................................................................	24	20	0.05	1	0	0	0	1	0
.............................................................................................................................................................................................................................................................................................................................................................................CAAC----------------------------------------------AACAGCAGCAACAACAACA..........................	23	20	0.05	1	0	0	0	0	1
................................................................................................................................................................................................................................AGCAACAACAGCAACA-G--C------------------------------------------AGCA.........................................................................................................................................................................	22	20	0.05	1	0	1	0	0	0
................................................................................................................................................................................................................................................................................................................................................G-------------CAGC------AGCAACAAC----------------------------------------------AACAGC.......................................	20	20	0.05	1	0	0	0	1	0
...............................................................................AACAACA-A---CAGCAGCAACAACAACAG...............................................................................................................................................................................................................................................................................................................................................................	26	20	0.05	1	0	0	0	1	0
................................................................................................GCAACAACAACAGCAGCAGCA.......................................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	1	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................GCAACAACAACAGCAG------CAGCAA------CA..	24	20	0.05	1	0	0	0	1	0
..........................................................................................................................................................................................................................................................................................................................................................................CAACAAC----------------------------------------------AACAGCAGCAACAACAACA..........................	26	20	0.05	1	0	0	0	1	0
...........................................................................................................................................................................................................................................................................................................................................................................AACAAC----------------------------------------------AACAGCAGCAACAA...............................	20	20	0.05	1	0	0	0	1	0
.............................................................................................................................ATCAGCAACAGCAACAGCAGC..........................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	1	0	0	0
........................................................................................................................................................TGCAACAGCAACAGCAACAG------------C...................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	1	0	0	0
.......................................................................................................................................................................................................................AATTG---CAGCAACAACAGCAACA-G--C------------------------------------------.............................................................................................................................................................................	24	20	0.05	1	0	1	0	0	0
............................................................................................................................................................................................................................................................................................................................CAACAACAGCAACAACAACTG-------------CAGC------....................................................................................................	25	20	0.05	1	0	1	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................ACAGCAGCAACAACAACAGCAG------................	22	20	0.05	1	0	1	0	0	0
...........................................................................................................................................................................................................................G---CAGCAACAACAGCAACA-G--C------------------------------------------AG...........................................................................................................................................................................	22	20	0.05	1	0	1	0	0	0
.................................................................................................................................................................................................................................................................................................................AATGGCAGCAACAACAACAGCA.....................................................................................................................................	22	20	0.05	1	0	1	0	0	0
.................................................................................................CAACAACAACAGCAGCAGCAACA....................................................................................................................................................................................................................................................................................................................................................	23	20	0.05	1	0	0	0	1	0
.....................................................................................A-A---CAGCAGCAACAACAACAGCA.............................................................................................................................................................................................................................................................................................................................................................	22	20	0.05	1	0	0	0	0	1
...................................................................................................................................................................................................................................................................................................................TGGCAGCAACAACAACAGCAACAACAAC.............................................................................................................................	28	20	0.05	1	0	1	0	0	0
......................................................................................................................................................................................................................................................................................................................................AACAACAACTG-------------CAGC------AGCAACA.............................................................................................	22	20	0.05	1	0	1	0	0	0
.............................................................................................................................................................................................................................................................................................................................AACAACAGCAACAACAACTG-------------CAGC------A...................................................................................................	25	20	0.05	1	0	0	0	1	0
....................................................................................................................................................................................................................................................................................................................GGCAGCAACAACAACAGCAAC...................................................................................................................................	21	20	0.05	1	0	1	0	0	0
AGCAACA--A--------------------CAAC--------------------T-GCAGCA---------------GCAACA.........................................................................................................................................................................................................................................................................................................................................................................................	25	20	0.05	1	0	0	0	1	0
....................................................................................................................................................................................................................AACAATTG---CAGCAACAACAGC................................................................................................................................................................................................................................	21	20	0.05	1	0	1	0	0	0
............................................................................................................................................................................................A------GCA------ACAGCAGCAACAATTG---.............................................................................................................................................................................................................................................	20	20	0.05	1	0	1	0	0	0
...............................................................................................................................................................................................................................................................................................................................CAACAGCAACAACAACTG-------------CAG...........................................................................................................	21	20	0.05	1	0	1	0	0	0
.................................................................................................................................................................................................................................................................................................CAA------------CAATGGCAGCAACAACAACAGC......................................................................................................................................	25	20	0.05	1	0	1	0	0	0
........................................................................................................AACAGCAGCAGCAACAACAGCA..............................................................................................................................................................................................................................................................................................................................................	22	20	0.05	1	0	1	0	0	0
.................................................................................CAACA-A---CAGCAGCAACAACAACA................................................................................................................................................................................................................................................................................................................................................................	23	20	0.05	1	0	0	0	0	1

droVir3

GGCAGCATGG----------------------GCCTCGGCATTGGCGGCGGCAGCAACAGCA---------------TTG-CTGCGCC---GAGCAGCCTCATCGGCGGCAACAGCAACACCAGCTTTTCAACGAACAACAACAGCAACCATGCGCTCAGCTCGACTTTGGG---CAGC------------------------------GGCATTAACTGTGGCAGCAGCGAGCAGCAG--------CCCTC---------GCGTCACAGCAGCA------------GCTCG---------------CATCAGCAACACCAGCAGCAGCACCCGCAG-------------CAGCAGCAGCAGCAGCACCAACAG--CAGCAG---C-----------------------------------------AACTGCAACAT------CAGCAA------CAGC	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
....................................CGGCATTGGCGGCGGC........................................................................................................................................................................................................................................................................................................................................................................................................................	16	6	0.17	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................G-------------CAGCAGCAGCAGCAGCACCAAC........................................................................................	23	7	0.14	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................CCCGCAG-------------CAGCAGCAGCAGCA................................................................................................	21	17	0.06	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................CAGCACCAACAG--CAGCAG---C-----------------------------------------A................................	20	17	0.06	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................CAGCAGCAGCAGCAGCACCAAC........................................................................................	22	17	0.06	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................CAGCAGCACCAACAG--CAGC................................................................................	19	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................AGCAGCACCAACAG--CAGCA...............................................................................	19	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droMoj3

AATGGTG----------------------GCA-G--------------------CAACAGCT-TA------------C---CAGCGCCGAGCAACAGCATTATTGGTGGCAACAGCAACACTAGCTTTTCCACCAACAACAACAGCAATCATGCGCTCAGTTCGACACTCTG---CAGCGTCA------------------------------------------TCAACGAGCAGC-AG-CAGCAGCTATC---------GCGGCACAGCGGCAACTCGC------ATCAC---------------CATCAACAACAGCC-----------------------------------------------------------GC---AAC---------------AGCAAAATCAGCATCAACAGCAGCAGCACCACCAC------CACCAC------CACT	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
.......................................................................................CGAGCAACAGCATTATTGGT.................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	1	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................AGCATCAACAGCAGCAGCA.............................	19	20	0.05	1	1	0	0	0	0	0

droGri2

AGCGGCA----------------------GCAGC--------------------A-GCAG------------------CAGCAGCAG----CAGCAGCAGCGGCAGCAGCAGCAGCAGCAGGAGCGGCAGCAGCAGCAGCAGCAGCAGCAGC---AGCAGCAGCAGCAGTAG---CAGCATCAGCAGCG------GCA------GCAGCAGCAGCAGCGG---CAGCAGCAGCAGCAGCA-G--C------------------------------------------GGCAG------------CAGCAGCAGCAGCAGC------GGCAGCAGCAG-------------CAGCAGCAGCAGCAGCAGC----------------------------------------------GGCAGCAGCAGCAGCGGCAGCAG------CAGCAG------CAGC	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
............................................................................................................................................AGCAGCAGCAGC---AGCAGCAGCAGCA....................................................................................................................................................................................................................................................................................................	25	20	0.10	2	2	0
....................................................................................................................................................................................................CA------GCAGCAGCAGCAGCGG---CA...........................................................................................................................................................................................................................................	20	20	0.05	1	0	1

dsi_5196

x:9976018-9976167 -

Candidate

Unknown

Predicted structure

Flybase annnotation

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads

-43.7	-43.4	-43.0