ID:

dsi_5179

 Coordinate:

2r:5274337-5274554 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

Flybase annnotation

exon [2r_5273995_5274336_-]; CDS [2r_5273995_5274336_-]; CDS [2r_5274555_5275757_-]; exon [2r_5274555_5275757_-]; intron [2r_5274337_5274554_-]

No Repeatable elements found

Sense Strand Reads

##################################################--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
GCGACGCAACGATTATCGTCAACAGTGGACTCGGCGAGCGGGACCAGATGGTAAGTGGCTTTCATGGTATACCTGTCTTAATATAAATTCTATATTAGTTATTAAATCAAAAAAGTCCAATTATACGACAAACTTTTATGATGAGGAAGAATTGCTTAGAACTCCTGACTTATTAAGCTTCGTTCGATCTCCTACCTTCTGAGCAGAAGGCATCTTATAGTCGTGGAAATCGCAATCAATTATCAATTTAAATAATTAATACCCACAGAATGCTCGGCTAAGACCAGCGAGGGATTCCGGCTGCACAAGACGGCCGTG
**************************************************....((((.((((((((((((......((((((((.....)))))))).......((((.((((((...............)))))).))))((((..((((.((((((((........)).))))))...))))..))))...((((((....)))))).....)))).)))))))).))))....((((((........))))))...........************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553488
RT_0-2 hours eggs
 M025
embryo
 GSM343915
embryo
 SRR553487
NRT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
 M024
male body		 SRR553486
Makindu_3 day-old ovaries
...........................................................................................................................................................................................................................................................................................CCAGCGAGGGATTCCGGCTG............... 20 0 1 1.00 1 0 1 0 0 0 0 0
..................TCAACCATGGACTCGGCGA......................................................................................................................................................................................................................................................................................... 19 2 1 1.00 1 1 0 0 0 0 0 0
...................................................................................................................................................................................TCGTTCGATCTCCGGCCTT........................................................................................................................ 19 2 1 1.00 1 0 0 1 0 0 0 0
..................................................................................................................................................................................................................CATCCTGTAGTCGTGGAAA......................................................................................... 19 2 2 0.50 1 1 0 0 0 0 0 0
..............................................................................................TCGGTTATTAAATCAAAAAA............................................................................................................................................................................................................ 20 2 4 0.25 1 1 0 0 0 0 0 0
..............................................................CATGGTATAACTGTGGTAA............................................................................................................................................................................................................................................. 19 3 17 0.24 4 0 0 0 4 0 0 0
....CGCATCGATTATCGT........................................................................................................................................................................................................................................................................................................... 15 1 7 0.14 1 1 0 0 0 0 0 0
..................................................GTAAGTTGCTTCCATGG........................................................................................................................................................................................................................................................... 17 2 7 0.14 1 0 0 0 0 1 0 0
........................................................................CTGTCTGAATGTAAATTCTC.................................................................................................................................................................................................................................. 20 3 7 0.14 1 0 0 0 0 0 1 0
..............................................................CATGGTATAACTGTGGTAAT............................................................................................................................................................................................................................................ 20 3 8 0.13 1 0 0 0 1 0 0 0
.....................................................................................................................................TTATATGATGAGGAA.......................................................................................................................................................................... 15 1 9 0.11 1 0 0 0 0 0 0 1
..............................................GAAGGTAACTGGCTTTC............................................................................................................................................................................................................................................................... 17 2 12 0.08 1 0 0 0 0 1 0 0
.....................................................................................................................................TTGTATGATGAGGAA.......................................................................................................................................................................... 15 1 14 0.07 1 1 0 0 0 0 0 0
......................................................................................................................................................................................................................................................................................TAAGAGCCGCGAGCGATTC..................... 19 3 16 0.06 1 0 0 0 0 1 0 0
........................................................................................TATATATTAGTTATTAA..................................................................................................................................................................................................................... 17 1 18 0.06 1 0 0 0 1 0 0 0
...........................................................................................................................................................................................................................ATCATGGAAGTCGCAATC................................................................................. 18 3 20 0.05 1 0 0 0 0 0 1 0
............................................................................................................................................................................................................................TCGTGGAAGTCGAAATCC................................................................................ 18 3 20 0.05 1 0 0 0 0 0 1 0
...................................................................................................................................ACTTATATGATGAGGT........................................................................................................................................................................... 16 2 20 0.05 1 0 0 0 0 1 0 0

Anti-sense strand reads

CGCTGCGTTGCTAATAGCAGTTGTCACCTGAGCCGCTCGCCCTGGTCTACCATTCACCGAAAGTACCATATGGACAGAATTATATTTAAGATATAATCAATAATTTAGTTTTTTCAGGTTAATATGCTGTTTGAAAATACTACTCCTTCTTAACGAATCTTGAGGACTGAATAATTCGAAGCAAGCTAGAGGATGGAAGACTCGTCTTCCGTAGAATATCAGCACCTTTAGCGTTAGTTAATAGTTAAATTTATTAATTATGGGTGTCTTACGAGCCGATTCTGGTCGCTCCCTAAGGCCGACGTGTTCTGCCGGCAC
**************************************************....((((.((((((((((((......((((((((.....)))))))).......((((.((((((...............)))))).))))((((..((((.((((((((........)).))))))...))))..))))...((((((....)))))).....)))).)))))))).))))....((((((........))))))...........************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR902009
testis
 SRR553487
NRT_0-2 hours eggs
 SRR553488
RT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
 M053
female body
 SRR553486
Makindu_3 day-old ovaries
 M023
head
 M024
male body
..............................................................................................................TTTTCAGGTTAAGATGTTGT............................................................................................................................................................................................ 20 2 2 2.50 5 5 0 0 0 0 0 0 0
.............................................................................................................TTTTTCAGGTTAAGATGTTGT............................................................................................................................................................................................ 21 2 2 1.50 3 3 0 0 0 0 0 0 0
...................................................................................................................AGGTTAATATGCTGC............................................................................................................................................................................................ 15 1 4 0.75 3 0 3 0 0 0 0 0 0
.................................................................................................................................................................................................................................................................................AGTCGATTCTCGTAGCTCCC......................... 20 3 3 0.67 2 0 1 1 0 0 0 0 0
.................................................................................................................TAAGGTTAATATGCTG............................................................................................................................................................................................. 16 1 2 0.50 1 0 0 0 1 0 0 0 0
.........................................................................................................................................................................................CTAAAGGCTGGAAGACTCG.................................................................................................................. 19 2 2 0.50 1 0 0 1 0 0 0 0 0
..............................................................................................................................................................................................AGATGGAAGACTCGACTTC............................................................................................................. 19 2 2 0.50 1 0 0 0 0 1 0 0 0
........................................................................GACAGATTTACATTTAAG.................................................................................................................................................................................................................................... 18 2 12 0.25 3 0 0 0 0 0 0 2 1
..........................................................................................................................................................................................................................................................................................GGGTTGCTCCATAAGGCCG................. 19 3 4 0.25 1 0 1 0 0 0 0 0 0
.................................................................................................................................................................................................................................................................................................TCGCTAAGGCCGAAGTG............ 17 2 12 0.25 3 0 0 3 0 0 0 0 0
.....................................................................................................................................................................................................................................................................................GAGTCTGGTCGATCCCTA....................... 18 2 4 0.25 1 0 0 0 0 0 1 0 0
.....................................................................................................................................................................................................................................................................................GATTCTGGTCGATTCCT........................ 17 2 8 0.25 2 0 0 2 0 0 0 0 0
..................................................................................................................AAGGTTAATATGCTG............................................................................................................................................................................................. 15 1 10 0.20 2 0 2 0 0 0 0 0 0
......................................................................................................................................................................................AAGCTAGGGGATTGAAG....................................................................................................................... 17 2 6 0.17 1 0 0 0 1 0 0 0 0
..............................................................................................................................................CTCCTTCTTCTCGAATCTT............................................................................................................................................................. 19 2 7 0.14 1 0 0 0 0 0 1 0 0
..............................................................................................................TTTTCAGGTTAAGATGTTGTGT.......................................................................................................................................................................................... 22 3 7 0.14 1 1 0 0 0 0 0 0 0
.GCTGCGTTGCTAACAGT............................................................................................................................................................................................................................................................................................................ 17 2 9 0.11 1 0 0 0 1 0 0 0 0
.....................................................................................................................................................................................................................................................................................GAGTCTGGTCGATCCCT........................ 17 2 9 0.11 1 0 1 0 0 0 0 0 0
.....................................................................................................AAGTTAGTTCTTTCAGGT....................................................................................................................................................................................................... 18 2 10 0.10 1 0 0 0 0 0 1 0 0
.......................................................................................................................................................................................................................................................................................................AGGCCGACGTGTTTGGC...... 17 2 11 0.09 1 0 0 1 0 0 0 0 0
...................................................................................................................AGGTTAATATGCTGCTA.......................................................................................................................................................................................... 17 2 12 0.08 1 0 1 0 0 0 0 0 0
.................................................................................................................................................................................................TCGGAGACTCGTCTTCC............................................................................................................ 17 2 12 0.08 1 0 1 0 0 0 0 0 0
..............................................................................................................TATTCAGGTTAAGATGTTGT............................................................................................................................................................................................ 20 3 13 0.08 1 1 0 0 0 0 0 0 0
..........................................................................................................AGATTTTCCAGGTTTATATG................................................................................................................................................................................................ 20 3 15 0.07 1 0 1 0 0 0 0 0 0
...........................................................................................................................................................AATCTTGGGAACTGAAT.................................................................................................................................................. 17 2 16 0.06 1 0 0 0 1 0 0 0 0
........................................................................................................................................................CTGAATCTTGAGGACAGAA................................................................................................................................................... 19 3 16 0.06 1 1 0 0 0 0 0 0 0
....................................................................................................................................................................................................................................................................................AGATTCTGGTCGATTCCTA....................... 19 3 17 0.06 1 0 0 1 0 0 0 0 0
..................CGTTGTCTCCTGAGCCG........................................................................................................................................................................................................................................................................................... 17 2 20 0.05 1 0 0 0 1 0 0 0 0
.....................................................................................TGAAGATATAATCAA.......................................................................................................................................................................................................................... 15 1 20 0.05 1 0 0 1 0 0 0 0 0
.............................................................................................................................................................................................AGGGTGGAAGACTCGA................................................................................................................. 16 2 20 0.05 1 0 0 1 0 0 0 0 0
........................................................................................................................................................TCTAATCTTGAGGACT...................................................................................................................................................... 16 2 20 0.05 1 0 0 1 0 0 0 0 0
......................................................................................................................TTAATATGGTGTTTGA........................................................................................................................................................................................ 16 1 20 0.05 1 0 0 0 1 0 0 0 0
..........................................................GAAAGTACCATAGGGT.................................................................................................................................................................................................................................................... 16 2 20 0.05 1 0 0 1 0 0 0 0 0
.......................................................................................................................................................................................................................................................................................GTCTGGTCGATCCCTA....................... 16 2 20 0.05 1 0 0 0 1 0 0 0 0

Generated: 04/23/2015 at 12:04 PM