ID:

dsi_5146

Coordinate:

3l:8268020-8268181 +

Confidence:

Candidate

Type:

Unknown

[View on UCSC Genome Browser {Cornell Mirror}]

Legend:

mature

star

mismatch in read

Predicted structure

-15.0	-14.8	-14.3	-14.1

Flybase annnotation

intergenic

No Repeatable elements found

Sense Strand Reads

CCGGCACTGCGTCAACTGTCCGAGTACGCTCGTCCCCACGTCGCCTTCAGGTGAGTTTCAGGAGATGGAGGAACCACTTTTCGCCGAGTTTTACGTCTGGTGCTAGGATTTTGTTCAGTTCTCTTCTGCCGTTTGCCTTCTCTTAACTCCATTTGGGAGTCCACCAAGTCGCGTTCGATGATTGTAATTATTTCCATTCGATTCAATTTCAGTCCTGTTGAGCAGATGGTGCCATATCATCATCCAATGGGCCCCATGTACA **********************************************************************************************...................((..((((....((((((((....(((((((......))))))).....)))).)).))..)).)).))****************************************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M024 male body	M025 embryo	M023 head	M053 female body	SRR618934 dsim w501 ovaries	SRR553487 NRT_0-2 hours eggs
................................................................................................................................................................CCACCAAGTCGCGTTCGATGATTG..............................................................................	24	0	1	2.00	2	0	2	0	0	0	0
................................................................................................CTGGTGCTAGGATTTTGT....................................................................................................................................................	18	0	1	2.00	2	0	2	0	0	0	0
..........GTCAACTGTCCGAGTACGCTCGTCCCCAC...............................................................................................................................................................................................................................	29	0	1	2.00	2	2	0	0	0	0	0
.............................................................................................................................................................................TTCGATGATTGTAATTAT.......................................................................	18	0	1	1.00	1	1	0	0	0	0	0
..............................................................................................................................................................................................................CTTCAGTCCTGTTGAGCAGATG..................................	22	1	1	1.00	1	1	0	0	0	0	0
...............................................................................................................................................................................................................TTCAGTCCTGTTGAGCAGATGGTGCC.............................	26	0	1	1.00	1	0	0	1	0	0	0
...............................GTCCCCACGTCGCCTTCA.....................................................................................................................................................................................................................	18	0	1	1.00	1	0	0	0	1	0	0
.........................................................................................................................................................................................................................TTGAGCAGATGGTGCCATATCATCAT...................	26	0	1	1.00	1	0	0	0	0	1	0
................................................................ATGTAGGAACCACTATTAG...................................................................................................................................................................................	19	3	15	0.07	1	0	0	0	0	0	1
........................................................................................................................................................................TCCCGTCCGATCATTGTA............................................................................	18	3	20	0.05	1	0	0	1	0	0	0
................................................AAGTGAGTTTCAGGAGT.....................................................................................................................................................................................................	17	2	20	0.05	1	0	0	0	0	0	1

Anti-sense strand reads

GGCCGTGACGCAGTTGACAGGCTCATGCGAGCAGGGGTGCAGCGGAAGTCCACTCAAAGTCCTCTACCTCCTTGGTGAAAAGCGGCTCAAAATGCAGACCACGATCCTAAAACAAGTCAAGAGAAGACGGCAAACGGAAGAGAATTGAGGTAAACCCTCAGGTGGTTCAGCGCAAGCTACTAACATTAATAAAGGTAAGCTAAGTTAAAGTCAGGACAACTCGTCTACCACGGTATAGTAGTAGGTTACCCGGGGTACATGT ****************************************************************************...................((..((((....((((((((....(((((((......))))))).....)))).)).))..)).)).))**********************************************************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR553487 NRT_0-2 hours eggs	SRR553488 RT_0-2 hours eggs	SRR553485 Chicharo_3 day-old ovaries	SRR618934 dsim w501 ovaries	SRR902009 testis
...........................................GAAAGTCAACTCAAAGTCCACTAC...................................................................................................................................................................................................	24	3	1	1.00	1	1	0	0	0	0
..............................................................................................................................................................AAGGTGGTTCGGCGCAAGCT....................................................................................	20	2	2	0.50	1	1	0	0	0	0
........CGCAGTTGATAGGCT...............................................................................................................................................................................................................................................	15	1	4	0.50	2	0	2	0	0	0
............................................AAAGTCAACTCAAAGTCCACTAC...................................................................................................................................................................................................	23	3	2	0.50	1	1	0	0	0	0
..................................................................................................................................................................................................................................................AGGTTAACCAGGGTACAT..	18	2	3	0.33	1	0	0	0	1	0
.............................................................................................................................................................AAAGGTGGTTCGGCGCAAGCT....................................................................................	21	3	3	0.33	1	0	0	1	0	0
...............................................................................................................................................................................................AAGGTAAGCTAAGTT........................................................	15	0	13	0.15	2	0	0	2	0	0
............................................................................................................................................................................................ATAAAGGTAAGCTAAG..........................................................	16	0	7	0.14	1	0	0	0	1	0
..............................................................................................................................................................................................................AAAGTCAGGACAACTCGAAC....................................	20	3	10	0.10	1	0	0	0	0	1
.............................................................................................................................................................TTAGGTGGTTCGGCGTAAGCT....................................................................................	21	3	11	0.09	1	0	0	1	0	0
...........................................AGAAGTCCACTCAAAG...........................................................................................................................................................................................................	16	1	12	0.08	1	1	0	0	0	0
....GGGTCGCAGTTGATAGGCT...............................................................................................................................................................................................................................................	19	3	12	0.08	1	0	1	0	0	0
........CGCAGTTGATAGGCTG..............................................................................................................................................................................................................................................	16	2	20	0.05	1	0	1	0	0	0

Generated: 04/24/2015 at 10:47 AM