ID:

dsi_5067

Coordinate:

3l:8267504-8267653 +

Confidence:

Candidate

Type:

Unknown

[View on UCSC Genome Browser {Cornell Mirror}]

Legend:

mature

star

mismatch in read

Predicted structure

-19.7	-19.1	-19.1

Flybase annnotation

intergenic

Repeatable elements

Name	Class	Family	Strand
AT_rich	Low_complexity	Low_complexity	+

Sense Strand Reads

CATTGATATTGAACCGGATCCAGAGCCAGAGATTCCCAGTCCAACGCACAACATACCACGTGGTCCCAGTCCCGAAGCAAAACCGGACGACACCGAATGCCATCGCTCTCAGTCTGCCATGTAAGTGATATGCCAAGCCGTCTTGTATTTCTGCGCTCAAAGTGTTATATAAATAATAATATAATTTAATAATTTTATAGATTTGTGCGCCACATCGATCGTGGGGATTACAATTCGTGCACGAGAACAG ************************************************.......(((((((....((((............))))(((...((..((....))..)).))).))))))).((((..((((.(((....))))))).....))))......(((((((........)))))))...............************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M025 embryo	M053 female body	SRR553487 NRT_0-2 hours eggs	M024 male body	SRR618934 dsim w501 ovaries	SRR553486 Makindu_3 day-old ovaries	SRR553488 RT_0-2 hours eggs	SRR902009 testis	GSM343915 embryo
........................................................................................................................................................................................................ATTTGTGCGCCACATCGATCGT............................	22	0	1	1.00	1	1	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................ATATTTGTGCGCCACGTCGATCGT............................	24	2	1	1.00	1	0	0	0	1	0	0	0	0	0
......TATTGAACCGGATCCAGAGCCAGAGA..........................................................................................................................................................................................................................	26	0	1	1.00	1	1	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................GCCACATCGATCGTGGGG........................	18	0	1	1.00	1	0	0	0	0	1	0	0	0	0
.........TGAACCGGATCCAGAGCC...............................................................................................................................................................................................................................	18	0	1	1.00	1	0	0	0	1	0	0	0	0	0
.................................................................................................TGCCAGCGCTCTCAGTCTCGCA...................................................................................................................................	22	3	1	1.00	1	0	0	1	0	0	0	0	0	0
................................................................................................................................................................................................................GCCACATCGATCGTGGGGATTAC...................	23	0	1	1.00	1	0	0	0	0	0	0	0	1	0
..................................................ACAGACCACGTGGTAGCAGTC...................................................................................................................................................................................	21	3	1	1.00	1	0	0	1	0	0	0	0	0	0
.ATTGATATTGAACCGGAT.......................................................................................................................................................................................................................................	18	0	1	1.00	1	0	0	0	0	0	1	0	0	0
.........................................................................GAAGCAAAACCGGACGAC...............................................................................................................................................................	18	0	1	1.00	1	0	1	0	0	0	0	0	0	0
........................................................................................................................................................................................................ATTTGTGCGCCACATCGATCGG............................	22	1	1	1.00	1	1	0	0	0	0	0	0	0	0
..TTGATATTGAACCGGATCCAGAGCC...............................................................................................................................................................................................................................	25	0	1	1.00	1	0	1	0	0	0	0	0	0	0
..................................................................................CCGGACGACACCGAATGCCACCGATC..............................................................................................................................................	26	2	1	1.00	1	0	0	0	0	0	0	1	0	0
.................ATCCAGGACCAGTGATTCCCA....................................................................................................................................................................................................................	21	3	1	1.00	1	0	1	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................CGTACGGATTACACTTCGT............	19	3	7	0.29	2	0	0	0	0	0	0	0	0	2
..............................................................GTCCTAGACCCGAAGCGAA.........................................................................................................................................................................	19	3	10	0.10	1	0	0	1	0	0	0	0	0	0
......................TAGCCAGAGATTCCC.....................................................................................................................................................................................................................	15	1	17	0.06	1	0	0	0	0	1	0	0	0	0
...............................................................TCCTAGACCCGAAGC............................................................................................................................................................................	15	2	20	0.05	1	0	0	0	0	0	1	0	0	0
..................................................................................................................................................................TGTAATGTAAAGAATAATATAA..................................................................	22	3	20	0.05	1	0	0	0	0	0	0	0	0	1

Anti-sense strand reads

GTAACTATAACTTGGCCTAGGTCTCGGTCTCTAAGGGTCAGGTTGCGTGTTGTATGGTGCACCAGGGTCAGGGCTTCGTTTTGGCCTGCTGTGGCTTACGGTAGCGAGAGTCAGACGGTACATTCACTATACGGTTCGGCAGAACATAAAGACGCGAGTTTCACAATATATTTATTATTATATTAAATTATTAAAATATCTAAACACGCGGTGTAGCTAGCACCCCTAATGTTAAGCACGTGCTCTTGTC ************************************************.......(((((((....((((............))))(((...((..((....))..)).))).))))))).((((..((((.(((....))))))).....))))......(((((((........)))))))...............************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR553486 Makindu_3 day-old ovaries	SRR618934 dsim w501 ovaries	SRR902009 testis	SRR553487 NRT_0-2 hours eggs	M053 female body	GSM343915 embryo	SRR553488 RT_0-2 hours eggs
......................................................................................................................................................................................................................AGATAGCACCCCTGATG...................	17	2	5	3.80	19	19	0	0	0	0	0	0
.............................................................................................................GTCAGACGATACATTCAATATACTGT...................................................................................................................	26	3	1	1.00	1	0	0	1	0	0	0	0
...........................TCTCTAAGGGTCAGG................................................................................................................................................................................................................	15	0	1	1.00	1	0	1	0	0	0	0	0
........................................................................GCTTCAATTTGGCATGCTG...............................................................................................................................................................	19	3	12	0.83	10	0	8	0	0	1	1	0
..................................................................................................CGGTCGCGAGAGTCAGAGCGT...................................................................................................................................	21	3	3	0.67	2	0	0	0	2	0	0	0
........................................................................................................CGAGAGTCAGACAGT...................................................................................................................................	15	1	14	0.21	3	0	0	0	2	0	0	1
.......................................................................CGCTTCAATTTGGCCTGC.................................................................................................................................................................	18	3	20	0.10	2	0	0	0	0	2	0	0
...................................GGTCAGGCTGCGTGT........................................................................................................................................................................................................	15	1	12	0.08	1	1	0	0	0	0	0	0
.............................................................................................................................................................................................................ACGCGGCGTAGATCGCACC..........................	19	3	14	0.07	1	1	0	0	0	0	0	0
....................................................................................................................................................................................................................GAAGATAGCACCCCTGATG...................	19	3	15	0.07	1	1	0	0	0	0	0	0
.........................................................................CTTCATATTGGCATGCTG...............................................................................................................................................................	18	3	16	0.06	1	0	0	0	0	1	0	0
......................................................................................................................................................................................................................AGATAGCACTCCTGATGT..................	18	3	19	0.05	1	1	0	0	0	0	0	0
.......................................................................................................TCGAGAGTCAGACGGTT..................................................................................................................................	17	2	20	0.05	1	0	0	0	1	0	0	0

Generated: 04/24/2015 at 10:47 AM