ID:dsi_5066 |
Coordinate:2r:5877937-5878086 - |
Confidence:Candidate |
Type:Unknown |
[View on UCSC Genome Browser {Cornell Mirror}] |
| Legend: | mature | star | mismatch in read |
|
|
|
|
| -6.4 | -6.4 | -6.3 |
 |
 |
 |
CDS [2r_5877777_5877936_-]; exon [2r_5877471_5877936_-]; intron [2r_5877937_5878919_-]
No Repeatable elements found
| --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------################################################## CTGCGTCTTTTCATTTGGCCAAGGGCTCATGGCAGCTTGAGTAAGTAGTCCTTGCTCCTTCCGCTCCTTAAGTCTTCGATCCCCCCTAAATTGTGCAGAATCTCTTTGCTAATCTGAAACAGCCAATGCGCCCTTACTGTAAGTAGATGTAGCTCCCAGTTCTCAGTCACTAACCGCCTTGTGTTTGGTTCTATTTGCAGGTTCGAGGGCTACAGAGGTTTCTACAAGGGGCTGAAGGCGAGTTTAACCC ****************************************************************************************************************.((((((((((...((((...(((((...))))).)))))))....))).)))).*********************************************************************************** |
Read size | # Mismatch | Hit Count | Total Norm | Total | SRR902009 testis |
M023 head |
GSM343915 embryo |
SRR553488 RT_0-2 hours eggs |
M024 male body |
O001 Testis |
O002 Head |
SRR553485 Chicharo_3 day-old ovaries |
SRR618934 dsim w501 ovaries |
SRR553487 NRT_0-2 hours eggs |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ................................................................................................................................................................................................................................CAAGGGGCTGAAGGCGAGTTT..... | 21 | 0 | 1 | 3.00 | 3 | 3 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| ...........................................................................................................................................................................................................................TTCTACAAGGGGCTGAAGGCG.......... | 21 | 0 | 1 | 3.00 | 3 | 3 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| ...........................................................................................................................................................................................................................TTCTACAAGGGGCTGAAGGCGTT........ | 23 | 2 | 1 | 2.00 | 2 | 2 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| ................................................................................................................TCTGAAACAGCCAATGCGCCC..................................................................................................................... | 21 | 0 | 1 | 2.00 | 2 | 0 | 2 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| ..........................................................................................................................................................................................................................TTTCTACAAGGGGCTGAAGGC........... | 21 | 0 | 1 | 2.00 | 2 | 2 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| ...........................................................................................................................................................................................................................TTCTACAAGGGGCTGAAGGC........... | 20 | 0 | 1 | 2.00 | 2 | 2 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| ............................................................................................................................................AAGTAGATGTAGCTCCCAGTTT........................................................................................ | 22 | 1 | 1 | 2.00 | 2 | 2 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| .......TTTTCATTTGGCCAAGGGCTC.............................................................................................................................................................................................................................. | 21 | 0 | 1 | 1.00 | 1 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| ...............................................................................................................ATCTGAAACAGCCAATGCGCC...................................................................................................................... | 21 | 0 | 1 | 1.00 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 |
| ..............................................................................................................................................................................................................................TACAAGGGGCTGAAGGCGAG........ | 20 | 0 | 1 | 1.00 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| .............................................................................................................................................................................................................................CTGCAAGGGGCTGAAGGCGA......... | 20 | 1 | 1 | 1.00 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| ..............................................................................................................................................................................................................................TGCAAGGGGCTGAAGGCGAGT....... | 21 | 1 | 1 | 1.00 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| ...............................................................................................................................................................................................................................ACAAGGGGCTGAAGGCGA......... | 18 | 0 | 1 | 1.00 | 1 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| .......................................................................................................................................................................................................GGTTTGAGGGCTACAGA.................................. | 17 | 1 | 1 | 1.00 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 |
| ...........................................................................................................................................................................................................................TTCTACAAGGGGCTGAAGGCGTTT....... | 24 | 2 | 1 | 1.00 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| ...................................................................................................................................................................................................................ACAGAGGTTTCTACAAGGG.................... | 19 | 0 | 1 | 1.00 | 1 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 |
| .................................................................................................................CTGAAACAGCCAATGCGCCCT.................................................................................................................... | 21 | 0 | 1 | 1.00 | 1 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 |
| ..........................................................................................TTGTGCAGAGTCTCTTTTCTGA.......................................................................................................................................... | 22 | 3 | 1 | 1.00 | 1 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| ......................................................................................................................................................................................GTTTGGTTCTATTTGTTGGTT............................................... | 21 | 2 | 1 | 1.00 | 1 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| ........................................................................................................................................................................................................GTTCGAGGGCTGCAGAGGTTT............................. | 21 | 1 | 1 | 1.00 | 1 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| .............................................................................................................................................................................................................................CTACAAGGGGCTGAAGGCGAG........ | 21 | 0 | 1 | 1.00 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| .................................................................................................................................................GATGTAGCTCCCAGTTCTCAGT................................................................................... | 22 | 0 | 1 | 1.00 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 |
| ..................................................................................................................................................................................................TTGTAGGTTCGAGCCCTACA.................................... | 20 | 3 | 3 | 1.00 | 3 | 0 | 0 | 0 | 3 | 0 | 0 | 0 | 0 | 0 | 0 |
| ..........................................................................................................................................................................................................................TTTCTACAAGGGGCTGAAGGCG.......... | 22 | 0 | 1 | 1.00 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| ................................................................................................................................................................................................................................CAAGGGGCTGAAGGCGAGTTTA.... | 22 | 0 | 1 | 1.00 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| ...........................................................................................................................................................................................................................TTCTACAGGGGGCTGAGGGCG.......... | 21 | 2 | 1 | 1.00 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| ................................................................................................................TCTGAGGCGGCCAATGCGCCC..................................................................................................................... | 21 | 3 | 1 | 1.00 | 1 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| ........................................GTAAGAAGTCCTTGTTACTT.............................................................................................................................................................................................. | 20 | 3 | 5 | 0.40 | 2 | 0 | 2 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| .............TTTGGCTAGGGGCTCATG........................................................................................................................................................................................................................... | 18 | 2 | 5 | 0.20 | 1 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 |
| ......................................................................................TAAGTTGCGCAGAATGTCTT................................................................................................................................................ | 20 | 3 | 17 | 0.18 | 3 | 3 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| .............................................................................................................................................................................................................................CTACAAAGGGCTGAAC............. | 16 | 2 | 20 | 0.10 | 2 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 2 |
| ..................................................................................................................................................................................TTGTGTTTGGTTCTGT........................................................ | 16 | 1 | 20 | 0.10 | 2 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 2 |
| ..............................................................................................................................TGCACCCTTACTGTAG............................................................................................................ | 16 | 2 | 12 | 0.08 | 1 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 |
| ..................CCAAGGGCACATGGAAGTT..................................................................................................................................................................................................................... | 19 | 3 | 20 | 0.05 | 1 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 |
| .............................................................................................................................ATGAACCCTTACTGTA............................................................................................................. | 16 | 2 | 20 | 0.05 | 1 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 |
|
GACGCAGAAAAGTAAACCGGTTCCCGAGTACCGTCGAACTCATTCATCAGGAACGAGGAAGGCGAGGAATTCAGAAGCTAGGGGGGATTTAACACGTCTTAGAGAAACGATTAGACTTTGTCGGTTACGCGGGAATGACATTCATCTACATCGAGGGTCAAGAGTCAGTGATTGGCGGAACACAAACCAAGATAAACGTCCAAGCTCCCGATGTCTCCAAAGATGTTCCCCGACTTCCGCTCAAATTGGG
***********************************************************************************.((((((((((...((((...(((((...))))).)))))))....))).)))).**************************************************************************************************************** |
Read size | # Mismatch | Hit Count | Total Norm | Total | SRR902009 testis |
M023 head |
SRR618934 dsim w501 ovaries |
SRR553485 Chicharo_3 day-old ovaries |
M024 male body |
M025 embryo |
SRR553488 RT_0-2 hours eggs |
SRR553487 NRT_0-2 hours eggs |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| .................................................................................................................GACTTTGTCGGCTACG......................................................................................................................... | 16 | 1 | 1 | 2.00 | 2 | 0 | 0 | 2 | 0 | 0 | 0 | 0 | 0 |
| ....................................................................ATTCAGAAGCTAGTGGGGGAT................................................................................................................................................................. | 21 | 3 | 1 | 2.00 | 2 | 2 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| .......................................................................................................................................................................................................................TCCGAAGATGTTCCCCGGCT............... | 20 | 2 | 1 | 2.00 | 2 | 0 | 2 | 0 | 0 | 0 | 0 | 0 | 0 |
| ..........................................................................................................................................................GGGTCAAGAGTCAGTGATT............................................................................. | 19 | 0 | 1 | 1.00 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| ...................................................................................................................................................................................................................................CCCCGGCTTCCGCTCAAGTTG.. | 21 | 2 | 1 | 1.00 | 1 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 |
| ...............................................................................................................................................................................................................................GGTTCCCCGACTTCCGGTCAAATTG.. | 25 | 2 | 1 | 1.00 | 1 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 |
| .................................................................................................................................................................................................................GATGTCTCCGAAGATGTTCCC.................... | 21 | 1 | 1 | 1.00 | 1 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 |
| .................................................................................................................................................................................................................GATGTCTCCAAAGATGTTCCC.................... | 21 | 0 | 1 | 1.00 | 1 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 |
| ...................................................................................................................................................ACATCGAGGGTCAAGAGTCAGT................................................................................. | 22 | 0 | 1 | 1.00 | 1 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 |
| ...............................................CAGGAACGAGGAAGGCGAGGA...................................................................................................................................................................................... | 21 | 0 | 1 | 1.00 | 1 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 |
| .......................CCGAGTACCGTCGGGCTCATT.............................................................................................................................................................................................................. | 21 | 2 | 1 | 1.00 | 1 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 |
| ............................................................................................................................................TTCATCTACATCGAGGGTCG.......................................................................................... | 20 | 1 | 1 | 1.00 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| .ACGCAGGGAAGTAAACCGGTT.................................................................................................................................................................................................................................... | 21 | 2 | 1 | 1.00 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| ..........................................................................................................................................................GGGTCGAGAGTCAGTGGTTG............................................................................ | 20 | 2 | 2 | 1.00 | 2 | 0 | 2 | 0 | 0 | 0 | 0 | 0 | 0 |
| ...............................................................AGGGAATTCAGAAGCTAGTGG...................................................................................................................................................................... | 21 | 3 | 1 | 1.00 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| ...........................................................................................................................................................................................................GCTCCCGATGTCTCCAAAGA........................... | 20 | 0 | 1 | 1.00 | 1 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 |
| ..................................................................................................................................................................................................TACGTCCAAGCTCCCGATGTCT.................................. | 22 | 1 | 1 | 1.00 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| ......................................CTCATTCATCAGGAACGAGGG............................................................................................................................................................................................... | 21 | 1 | 1 | 1.00 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| .......................................................................................................................................................................................................................TCCGAAGATGTTCCCCGGCTT.............. | 21 | 2 | 1 | 1.00 | 1 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 |
| ......................................CTCATTCATCAGGAACGAGGA............................................................................................................................................................................................... | 21 | 0 | 1 | 1.00 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| .....................................ACTCATTCGTCAGGAACGAGG................................................................................................................................................................................................ | 21 | 1 | 1 | 1.00 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| .....................................................................TTCAGAAGCTAGTGGGGGAT................................................................................................................................................................. | 20 | 3 | 2 | 0.50 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| ..................................................GAACGAGGAAGGCGAGGGAAT................................................................................................................................................................................... | 21 | 2 | 2 | 0.50 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| .............................................................................................................................................................................................................TCCTGATGGCTCCATAGAT.......................... | 19 | 3 | 7 | 0.43 | 3 | 0 | 0 | 0 | 0 | 0 | 0 | 3 | 0 |
| ............................................................TGCGAGGACTACAGAAGCTAG......................................................................................................................................................................... | 21 | 3 | 4 | 0.25 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| ..................................................................TAATTCAGAAGCTAG......................................................................................................................................................................... | 15 | 1 | 4 | 0.25 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 |
| .....................................................................................GATTCAACGCGTCTTACAGAA................................................................................................................................................ | 21 | 3 | 5 | 0.20 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 |
| ........................................................GGAAGGCGGGAAAGTCAGAA.............................................................................................................................................................................. | 20 | 3 | 9 | 0.11 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| .................................................................CTAATTCAGAAGCTAG......................................................................................................................................................................... | 16 | 2 | 20 | 0.10 | 2 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 2 |
| .......................................................................................................................GTCGGATGCGCGGGAA................................................................................................................... | 16 | 2 | 17 | 0.06 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 |
| ..............................................................................................................................................................................................GATATAGGTCCAAGCT............................................ | 16 | 2 | 20 | 0.05 | 1 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 |
| ..................................................................TAATTCAGAAGCTAGC........................................................................................................................................................................ | 16 | 2 | 20 | 0.05 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 |
| .............................................................................................................................................................................................................TCCTGATGGCTCCATAGA........................... | 18 | 3 | 20 | 0.05 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 |
Generated: 04/24/2015 at 01:46 AM