ID:dsi_5064 |
Coordinate:3l:7535967-7536116 - |
Confidence:Candidate |
Type:Unknown |
[View on UCSC Genome Browser {Cornell Mirror}] |
| Legend: | mature | star | mismatch in read |
|
intergenic
No Repeatable elements found
|
CCGTCTTCCCACAGGGAGCCCTCACCAAGAAGATCAAAGTTGGCTTACAGGTAAACCTCTTTAAACCGCGCAAGGGCGTCGCGCCTGAGAAATTGCGTAAAATAAGCGTCAATCATGTGCCCAAGAAGAAGCGCTTCTCGCTCATCTGGTAAATCAGCCAGGGCATTCATATTCTACGCTTAAACGGAAAAATAGTAAAAGTCCAAACCAATTACGTTATCGGTCAGCATATATACTCGAGCATTTAATC
**************************************************...............(((((((((((((...)))))......))))).....(((((((.......((((((..((.((.(((.....))))).))((((......)))))))))).........)))))))..))).............************************************************** |
Read size | # Mismatch | Hit Count | Total Norm | Total | O002 Head |
SRR553487 NRT_0-2 hours eggs |
SRR553488 RT_0-2 hours eggs |
SRR553486 Makindu_3 day-old ovaries |
|---|---|---|---|---|---|---|---|---|---|
| ....CTTCCCACAGGGAGCCCT.................................................................................................................................................................................................................................... | 18 | 0 | 1 | 1.00 | 1 | 1 | 0 | 0 | 0 |
| .....................TTACCAAGAAGATCAAA.................................................................................................................................................................................................................... | 17 | 1 | 2 | 0.50 | 1 | 0 | 1 | 0 | 0 |
| ....................................................................................................................................................................................................................TACGTTCTCGGTCAG....................... | 15 | 1 | 7 | 0.14 | 1 | 0 | 0 | 1 | 0 |
| ...................................................................................................................................................GGTAAATCCGCCAGG........................................................................................ | 15 | 1 | 10 | 0.10 | 1 | 0 | 0 | 1 | 0 |
| .............................................................................................................................AAGAAGCCCGTCTCGCT............................................................................................................ | 17 | 2 | 15 | 0.07 | 1 | 0 | 1 | 0 | 0 |
| .............................................................................................................................AAGAAGCCCTTGTCGCT............................................................................................................ | 17 | 2 | 17 | 0.06 | 1 | 0 | 0 | 0 | 1 |
| .......................ACCAAGAAAATCAAAGGT................................................................................................................................................................................................................. | 18 | 2 | 19 | 0.05 | 1 | 0 | 1 | 0 | 0 |
|
GGCAGAAGGGTGTCCCTCGGGAGTGGTTCTTCTAGTTTCAACCGAATGTCCATTTGGAGAAATTTGGCGCGTTCCCGCAGCGCGGACTCTTTAACGCATTTTATTCGCAGTTAGTACACGGGTTCTTCTTCGCGAAGAGCGAGTAGACCATTTAGTCGGTCCCGTAAGTATAAGATGCGAATTTGCCTTTTTATCATTTTCAGGTTTGGTTAATGCAATAGCCAGTCGTATATATGAGCTCGTAAATTAG
**************************************************...............(((((((((((((...)))))......))))).....(((((((.......((((((..((.((.(((.....))))).))((((......)))))))))).........)))))))..))).............************************************************** |
Read size | # Mismatch | Hit Count | Total Norm | Total | SRR553487 NRT_0-2 hours eggs |
SRR553488 RT_0-2 hours eggs |
SRR553485 Chicharo_3 day-old ovaries |
M024 male body |
SRR553486 Makindu_3 day-old ovaries |
M023 head |
GSM343915 embryo |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| .........................................................AGAAATTTGGCGCATGC................................................................................................................................................................................ | 17 | 2 | 7 | 4.00 | 28 | 19 | 1 | 5 | 0 | 3 | 0 | 0 |
| GGCAGAAAGGTGTCCCT......................................................................................................................................................................................................................................... | 17 | 1 | 1 | 1.00 | 1 | 0 | 1 | 0 | 0 | 0 | 0 | 0 |
| ................................TAGTCTCAACCGAGTGTCC....................................................................................................................................................................................................... | 19 | 2 | 2 | 0.50 | 1 | 0 | 0 | 0 | 1 | 0 | 0 | 0 |
| ................................TAGTCTCAACCGAGTGTC........................................................................................................................................................................................................ | 18 | 2 | 7 | 0.43 | 3 | 0 | 0 | 0 | 2 | 0 | 1 | 0 |
| .................................................................................................................................TCGCGAAGATCGGGTAGA....................................................................................................... | 18 | 2 | 5 | 0.20 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 1 |
| ..................................................................................................................................................ACAATCTAGTCGGTACCGTA.................................................................................... | 20 | 3 | 5 | 0.20 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 |
| ..............................TCTAGTTTCAAACGAGTG.......................................................................................................................................................................................................... | 18 | 2 | 6 | 0.17 | 1 | 0 | 1 | 0 | 0 | 0 | 0 | 0 |
| ...................................................ATTTTGAGAAATTTGG....................................................................................................................................................................................... | 16 | 1 | 17 | 0.12 | 2 | 0 | 0 | 2 | 0 | 0 | 0 | 0 |
| ........................................................GAGTAAGTTAGCGCGTTCC............................................................................................................................................................................... | 19 | 3 | 10 | 0.10 | 1 | 0 | 0 | 0 | 0 | 1 | 0 | 0 |
| ............................................................................................................................................................................................................................CCCAGTCGTATATACGAGT........... | 19 | 3 | 14 | 0.07 | 1 | 0 | 0 | 0 | 0 | 0 | 1 | 0 |
| ...............................CTAGTTTCAAACGAGTG.......................................................................................................................................................................................................... | 17 | 2 | 20 | 0.05 | 1 | 0 | 1 | 0 | 0 | 0 | 0 | 0 |
| ..........................................................GAAATTTGGCGCATGC................................................................................................................................................................................ | 16 | 2 | 20 | 0.05 | 1 | 0 | 0 | 0 | 0 | 1 | 0 | 0 |
| .........................................................................................................................................................................ACAAGATGGGAATTTG................................................................. | 16 | 2 | 20 | 0.05 | 1 | 0 | 1 | 0 | 0 | 0 | 0 | 0 |
| ......................................................................................................................................................TTTAGTCGGTCCGGT..................................................................................... | 15 | 1 | 20 | 0.05 | 1 | 0 | 1 | 0 | 0 | 0 | 0 | 0 |
Generated: 04/24/2015 at 10:21 AM