ID:

dsi_5044

 Coordinate:

2l:4843220-4843369 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-19.4 -19.4 -19.2

Flybase annnotation

exon [2l_4843370_4843470_+]; five_prime_UTR [2l_4843370_4843450_+]; intron [2l_4843038_4843369_+]

Repeatable elements

NameClassFamilyStrand
AT_richLow_complexityLow_complexity+
mature
  1. dsi_5044  2l:4843232-4843247 +
  2. 2l:6053839-6053854 +
  3. 2l:23408937-23408952 +
  4. 2r:1014237-1014252 +
  5. 2r:10129621-10129636 -
  6. 3r:3831192-3831207 -
  7. 3r:11272245-11272260 -
  8. 3r:17617439-17617454 -
  9. x:239384-239399 +
  10. x:4674251-4674266 -
  11. x:4689941-4689956 +
  12. x:5742713-5742728 +
  13. x:6933483-6933498 +
  14. x:7974517-7974532 +
  15. x:11390676-11390691 +
  16. node_1605:1671-1686 -
star

Sense Strand Reads

--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
CTCTCAAACTGTCGCGTGTATATGCTTGGAAATGAAATGAAACGAAATACAAGAATTAAATCGTTGAAAAAAAAAAAAAATAAGCCAGCTCGATTTTCCCACAAATATTAAATAAAATAATATTCCTCTAAGAATATTTCCAATTTATTTTGCAACTGTTGCGAAATTAAAGTGCCCAATTCTCTGGCTCATCTTTCCAGGCCCAGCGACGGCAACATATAAACTTCAAATTCGACGAGGACAGAGCAAA
**************************************************................................((((((...((......(((................(((((((......)))))))........(((((((((...)))))))))....)))......)).))))))...........************************************************** 		Read size # Mismatch Hit Count Total Norm Total M025
embryo
 SRR553488
RT_0-2 hours eggs
 SRR553486
Makindu_3 day-old ovaries
 SRR553485
Chicharo_3 day-old ovaries
 SRR902008
ovaries
 M053
female body
 M024
male body		 O001
Testis
 SRR618934
dsim w501 ovaries
 SRR553487
NRT_0-2 hours eggs
 SRR902009
testis
.................................................................................................................................................................................................................................TCAAATTCGACGAGGACAGAGCA.. 23 0 1 2.00 2 1 0 0 0 1 0 0 0 0 0 0
................................................................................................................................................................................................................................TTCAAATTCGACGAGGACAGA..... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
........................................................TACCTCGTTGAAAAAAAAAAAAAA.......................................................................................................................................................................... 24 2 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
.......................................................TTCAATCGCTGAAAAAAAAAAAAAA.......................................................................................................................................................................... 25 2 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................................CTTCAAATTCGACGAGGAC........ 19 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
........................................................TACCTCGTTGAAAAAAAAAAAA............................................................................................................................................................................ 22 2 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................................ATTCGACGAGGACAGAGCAAA 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................................AAATTCGACGAGGACAGAGCAAA 23 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
.....................................................AATTCAATCGCTGAAAAAAAAAAAAAA.......................................................................................................................................................................... 27 2 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0
................................................................................................................................................................................................................................TTCAAATTCGACGAGGAC........ 18 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.......................................................TGAAACCGTTGAAAAAAAAAAAA............................................................................................................................................................................ 23 2 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
.....................................................AATTCAATCGCTGAAAAAAAAAAAAA........................................................................................................................................................................... 26 2 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0
..............................................................................................................................................................................................................................ACTTCAAATTCGACGAGGACAGAGC... 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................AGCGACGGCAACATATAAACTTCA...................... 24 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0
.....................ATGCTTGGGATTGAACTGAAAC............................................................................................................................................................................................................... 22 3 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0
........................................................................................................................................................................................................................ATATAAACTTCAAATTCGACGAGGAC........ 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.......................................................TTAAACCGTTGAAAAAAAAAA.............................................................................................................................................................................. 21 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................................ATTCGACGAGGACAGAGC... 18 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
........................................................TACCTCGTTGAAAAAAAAAAAAA........................................................................................................................................................................... 23 2 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
........................................................TACCTCGTTGAAAAAAAAAAA............................................................................................................................................................................. 21 2 3 0.67 2 0 0 2 0 0 0 0 0 0 0 0
...............................................TAGAAAAAATAAATCGTTGAAAAA................................................................................................................................................................................... 24 3 2 0.50 1 0 0 0 0 1 0 0 0 0 0 0
.......................................................TTAAATCGGTGATAAAATAAAAAA........................................................................................................................................................................... 24 3 4 0.50 2 0 0 0 2 0 0 0 0 0 0 0
.......................................................TTAATTCGTTTAAAAAAAAAAAAA........................................................................................................................................................................... 24 2 2 0.50 1 0 1 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................................AAATTCGAAGAGGACAGGGGA.. 21 3 2 0.50 1 0 0 0 0 0 0 0 0 1 0 0
........................................................TACCTCGTTGAAAAAAAAAA.............................................................................................................................................................................. 20 2 9 0.44 4 0 3 0 0 0 0 0 0 0 1 0
...................................................................................................................................................................................................................................AAATTCGAAGAGGACAG...... 17 1 3 0.33 1 0 0 0 0 0 0 0 0 1 0 0
........................................................TACCTCGTTGAAAAAAAAA............................................................................................................................................................................... 19 2 11 0.27 3 0 2 0 0 0 0 0 0 0 1 0
...........................................................TTCGTTGAAAAAAAAAAAAAA.......................................................................................................................................................................... 21 1 4 0.25 1 0 0 0 1 0 0 0 0 0 0 0
........................................................TAAATCGGTTAAAAAAAAAAAAAA.......................................................................................................................................................................... 24 2 9 0.22 2 0 1 0 0 0 0 0 0 0 1 0
.....................ATGCTTGGGATTGAACTGAAA................................................................................................................................................................................................................ 21 3 5 0.20 1 0 0 0 1 0 0 0 0 0 0 0
..........................................................AATCGCTGAAAAAAAAAAAAAAAA........................................................................................................................................................................ 24 2 5 0.20 1 0 0 0 0 0 1 0 0 0 0 0
.......................................................TGTAAACGTTGAAAAAAAAAAAAAA.......................................................................................................................................................................... 25 3 7 0.14 1 0 0 0 1 0 0 0 0 0 0 0
........................................................TAAATAGGTGAAAAAAAAAAAAA........................................................................................................................................................................... 23 2 7 0.14 1 0 1 0 0 0 0 0 0 0 0 0
........................................................TTAGTCGTTGAAAAAAAAAAAAAAA......................................................................................................................................................................... 25 3 7 0.14 1 0 0 0 0 0 0 0 0 0 1 0
.......................................................TTAAACCGTTGAAAAA................................................................................................................................................................................... 16 1 9 0.11 1 0 0 1 0 0 0 0 0 0 0 0
........................................................TTCATCGTTGAAAAAAAAAA.............................................................................................................................................................................. 20 2 10 0.10 1 0 0 1 0 0 0 0 0 0 0 0
........................................................TAATTCGTTCAATAAAAAAAAAAA.......................................................................................................................................................................... 24 3 10 0.10 1 0 0 0 0 0 0 0 0 0 1 0
.....................................................TATTCAATCGTTCAAAAAAAAA............................................................................................................................................................................... 22 3 10 0.10 1 0 0 0 0 1 0 0 0 0 0 0
...................................................................................................................................................................................................................................AAATTCGAAGAGGACAGC..... 18 2 12 0.08 1 0 0 0 0 0 0 0 0 1 0 0
.......................................................TGAAATCGTTAAAAAAAAAAAAAAAAA........................................................................................................................................................................ 27 3 12 0.08 1 0 0 0 0 1 0 0 0 0 0 0
................................................................................................................................................TTGTTTTGCAACTGTTGCT....................................................................................... 19 2 13 0.08 1 0 0 0 0 0 0 0 0 0 1 0
................................................................................................................TAAAATTATACTCCTCTAAAAA.................................................................................................................... 22 3 15 0.07 1 0 0 0 0 1 0 0 0 0 0 0
..............................................................GTTGAAAAAAAAAAAA............................................................................................................................................................................ 16 0 16 0.06 1 0 0 0 1 0 0 0 0 0 0 0
.................................................................GAAAAAAAAAAAAAATA........................................................................................................................................................................ 17 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 1
.......................................................TAAAATCGTTGTAAAAAAA................................................................................................................................................................................ 19 2 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0
.........................................................ACCTCGTTGAATAAAAAAAAA............................................................................................................................................................................ 21 3 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0
.....................................................TATTCAATCGTTCAAAAAAA................................................................................................................................................................................. 20 3 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0

Anti-sense strand reads

GAGAGTTTGACAGCGCACATATACGAACCTTTACTTTACTTTGCTTTATGTTCTTAATTTAGCAACTTTTTTTTTTTTTTATTCGGTCGAGCTAAAAGGGTGTTTATAATTTATTTTATTATAAGGAGATTCTTATAAAGGTTAAATAAAACGTTGACAACGCTTTAATTTCACGGGTTAAGAGACCGAGTAGAAAGGTCCGGGTCGCTGCCGTTGTATATTTGAAGTTTAAGCTGCTCCTGTCTCGTTT
**************************************************................................((((((...((......(((................(((((((......)))))))........(((((((((...)))))))))....)))......)).))))))...........************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553485
Chicharo_3 day-old ovaries
 SRR553487
NRT_0-2 hours eggs
 M024
male body		 SRR553486
Makindu_3 day-old ovaries
 M053
female body
 SRR553488
RT_0-2 hours eggs
 SRR902009
testis
................................................................................................AGGGTGTTTATAATTCATTTT..................................................................................................................................... 21 1 1 1.00 1 1 0 0 0 0 0 0
.............................................................................................................................................................................CGGGTTAAGAGACCGAGTAGAAAGGT................................................... 26 0 1 1.00 1 0 1 0 0 0 0 0
..........................................................................................................................AAGGAGGTTCTTATAGAGGTT........................................................................................................... 21 2 1 1.00 1 1 0 0 0 0 0 0
.......................................................................................................................................................................................................CCGGGTTGCTACCGTTGTA................................ 19 2 3 0.33 1 0 0 1 0 0 0 0
...............................................................AAGTTTTTTTTTTTTTTGTTCGGT................................................................................................................................................................... 24 2 4 0.25 1 1 0 0 0 0 0 0
...............................................................................................AAGGGCGTTGATAATTTATAT...................................................................................................................................... 21 3 12 0.17 2 0 2 0 0 0 0 0
..............................................................AAAATTTTTTTTTTTTTTGTTCGGT................................................................................................................................................................... 25 3 12 0.17 2 1 0 0 0 1 0 0
....................................................................................................................................................AAACGTTGACAGCTCTTT.................................................................................... 18 2 8 0.13 1 0 0 0 1 0 0 0
....................................................................................................................................................................................................GGTCCAGGTCGCTGC....................................... 15 1 13 0.08 1 0 0 0 1 0 0 0
....................................................................................................................................................................................AGAAACTAAGTAGAAAGGTC.................................................. 20 3 16 0.06 1 0 0 0 1 0 0 0
...............................................................................................AAGGGTGTTTAAAAATTA......................................................................................................................................... 18 2 20 0.05 1 0 1 0 0 0 0 0
.......................................................................TTTTTTTTTCTACGGTCGATC.............................................................................................................................................................. 21 3 20 0.05 1 0 0 0 0 0 0 1
................................................................................................................................ATTCTTATAAAGATTA.......................................................................................................... 16 1 20 0.05 1 0 0 0 0 0 1 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 2l:4843170-4843419 + dsi_5044 CTCTCAAACTGTCGCGTGTA---------------TATGCTTGGAAAT----G--A-----------AAT------GAAACG-----------------------------------------------------------------------------AAATACAAGAAT-------------------------------------------------------------------------------------------TA-------------AATCGT-TGAAAAAAAA-A-------------------------------------------AAAAA-TAAGCCAGCTCGATTTTCCCACAAAT-ATTAAATA-------AAATA----------------AT----ATTCCTCTAAGA--ATATT-TCC-----------------------------AATTTA-TTTTGCA---ACT---GTTGCGA-A-A-TTAAAGTG-CCCAA--TTCTCTGGCTC--ATCTTTCCAGGCCCAGCGACGGCAACATATAAAC--TTCAAATTCGA-CGAGGACAG-AGCAAA
droSec2 scaffold_5:3116405-3116653 + CTCTCAAACTGTCGCGTGTA---------------TACGCTTGGAAAT----G--A-----------AAT------GAAACG-----------------------------------------------------------------------------AAATACAAGAAT-------------------------------------------------------------------------------------------TA-------------AATCGT-TGAAAAAAA--A-------------------------------------------AAAAA-TAAGCCAGCTCGATTTTCCCACAAAT-ATTAAATA-------AAATA----------------AT----ATTCCTCTAAGA--ATATT-TCC-----------------------------AATTTA-TTTTGCA---ACT---GTTGCGA-A-A-TTAAAGTG-CCCAA--TTCTCTGGCTC--ATCTTTCCAGGCCCAGCGACGGCAACATATAAAC--TTCAAATTCGA-CGAGGACAG-AGCAAA
dm3 chr2L:5029943-5030186 + CTCTCAAACTGTCGCGTGTA---------------TATGCTTGGAAAT----G--A-----------AAT------GAAACG-----------------------------------------------------------------------------AAATACAAGAAT-------------------------------------------------------------------------------------------TA-------------AATCGT-TGAAAA--------------------------------------------------AAAA-TAAGCCAGCTCGATTTTCCCACAAAT-ATTAAATA-------AAATA----------------AT----ATTCCTCTAAGA--ATATT-TCC-----------------------------AATTTA-TTTTGCA---ACT---GTTGCGA-A-A-TTAAAGTG-CCCAA--TTCTCTGGCTC--ATCTTTCCAGGCCCAGCGACGGCAACATATAAAC--TTCAAATTCGA-CGAGGACAG-AGCAAA
droEre2 scaffold_4929:5108828-5109087 + TTTTCAAACTGTCGCGTGTACGAGAAATATTCCGATATGCTTGGAAAT----T--A-----------AAT------GAAACG-----------------------------------------------------------------------------AAATACAACCAT-------------------------------------------------------------------------------------------TA-------------AATCGT-TGAAAG-------------------------------------------------ACAAA-TAAGCCAGCTTGATTTTCCCACGAAT-ATTAAATA-------AAATA----------------AT----ATTCCTCTAAGA--ATATT-TTT-----------------------------AATTTA-TTTTGCA---ACT---GTTGCGA-A-A-TTAAAGTG-CCCAA--TTTTTTGGCTC--ATCTTTCCAGGCCCAGCGACGGCGACATATAAAA--TTCAAATTCGA-CGAGGACAG-AGCAAA
droYak3 2L:10495396-10495653 - TTCTCAAACTGTCGCGTGTACAAGAAATATTCCGATATGCTTGGAAAT----T--A-----------AAT------AATACG-----------------------------------------------------------------------------AAATACAACCAT-------------------------------------------------------------------------------------------TA-------------AATCGT-TGACAAA-------------------------------------------------AAAA-T--GCCAGCTTAATTTTCCCACCAAT-ATTAAATA-------AAATA----------------AT----ATTCCTCTAAGA--ATATT-TCC-----------------------------AATTCA-TTTTGCA---ACT---GTTGCGA-A-A-TTAAAGTG-CCCAA--TTTTCTGGCTC--ATCTTTCCAGGCCCAGCGACGGCAACATATAAAA--TTCAAATTCGA-CGAAGACAG-AGCAAA
droEug1 scf7180000409005:914519-914781 + TTCTCAAACTGCAGCGAAA-AAAGAACTGTTTCCTTATGGTTGAAAAT----G--A-----------AAT------AAAATG-----------------------------------------------------------------------------AAA----AGA-----------------------------------------------------------------------------------------------------------------T-TAAAAT-------------------------------------------------AAAAA-TGAAGAAACTTGATTTTCCCACAAAT-ATTAAATG-------AAATA----------------AA----ATTCACATAAGA--ATACCGT-------AAAAATTCTGTAACATTG-----AAAATTA-TTTTGCA---ACT---GTTGCGA-A-A-TTAAAGTG-CCCAA--TTTTCTGGCTC--ATCTTTCCAGGCCCAGCGACGGCAACATATAA-A--TTAATATTCGA-CGAGGACAG-AGCAAA
droBia1 scf7180000302261:458220-458460 + TTCCCAAACTGTAGCGCGAAAA---GCTGTTCCTTTTCGCTCGAACCT----T--A--------GGAATT------GAGAAA-----------------------------------------------------------------------------ATGTA--------------------------------------------------------------------------------------------------------------------------AAA--------------------------------------------------AACAC-TTAG-------GCGTTTCCCACAAAT-ATTTAATG--------------------------------------TCGCAAGA--ACACCGG-------TCAAGTTCTGTAGTTTTA-----AAATGTA-TTTTGCC---AAT---GCTGCGA-A-A-TTAAAGTG-CCCAA--TTTTCTGGCTC--ATCTTTCCAGGCCCAACGACGGCAACATATAA-A--TTAATATTCGA-CGAGAACCG-AGAAAA
droTak1 scf7180000415204:119187-119422 - TTCTCAAACTGTAACGTGAAAATGAAATGTTCCTTCAAGCTCGGACCT----T--A--------AA-AAT------GAAACG-----------------------------------------------------------------------------AAATACAAGCAT--------------------------------------------------------------------------------------------------------------------AA--------------------------------------------------AAAAA-TAAAGCAACTTGATTTTCCCACAAAT-ATTAAATA-------AC---------------------------TGC------------------------C-------ACT-CTTTG------AAATTA-TTCTGCA---ACT---GTTGCGA-A-A-TTAAAGTG-CCCAA--TTTTCTGGCTC--ATCTTTCCAGGCCCAACGACGGCAACATATAA-A--TTAATATTCGA-CGAGAACCG-AGAAAA
droEle1 scf7180000491273:202586-202884 - CTCTCAAACTGTAACGTGAAAAATAAATGT-------TACTTGGACCA----C--AAATAAATAAA-TAT----------------------------------------GAA------------ATGCAAAACCAAAG----------AA----AATAAAATACCAACAT-------------------------------------------------------------------------------------------TA-------------AATAAA-AAAAA--------------------------------------------------AAAAA-TAAAGCAACTT-ATTTTCCCACAAAT-ATTATATG-------AAACA----------------AA----TTTCCCATAAGA--ACACCGT-------TCAACTTTTATA-CTTTGT----TAGTTCA-TTTTGCA---ACT---GTTGCAA-A-AATTAAAGCG-CCGAA--TTTTCTGGCTC--ATCTTTCCAGGCCCAACGACGGCAACATATAAAATAATAAAATTCGA-CGAGGACAG-AGCAAA
droRho1 scf7180000777055:101112-101407 + TTCTCAAACTGTACCGTCAAAAATTACTGT-------TACTTGGACCA----C--AAAAAGCGGAA-AAA----------------------------------------GAA------------ATGCAATACCAAAT----------AA----AATAAAATACCAACGT-------------------------------------------------------------------------------------------TA-------------AATCAT-TAAAAA--------------------------------------------------AAAT-TCAAGAAACTCGATTTTCCCACAAAT-ATTAAATG-------AAACT----------------TA----TTTTCCATAAAA--ATACCGT-------TCAACTTTTGTACTTTTA-----AAATTTA-TTTTGCA---ACT---GTTGTGA-A-A-TTTAAGTG-CTCAA--TTTTCTGGCTC--ATCTTTCCAGGCCCAACGACGGTAACATAAAA-A--TTAATATTCAA-CGAGGACAG-AGCAAA
droFic1 scf7180000453842:1217876-1218160 - CTCCAAAACTGTAGCGCGAAATAGAAATGT-------TGCTCGAACAA----C-CAAAAATCTGAA-AAT----------------------------------------GAT------------ATGCAAAAGCAAAA----------AT----AAAAAAATACAACCAC-------------------------------------------------------------------------------------------TA-------------AATCATATGAAAAAAA---------------------------------------------------------------AATTTTCCCACACAT-ATTAAATA-------AAACG----------------AG----TCTGCCATAAGA--AAATCGT-------AAAAATTCTGTTACTTTG------AAATTA-TTTTGCA---ACT---GCTGCGA-A-A-TTAAAGTG-CCCAA--TTTTCTGGCTC--ATCTTTCCAGGCCCAACGACGGCAACATATAA-A--TTAAAATTCGA-CGAGGACAG-AGCAAA
droKik1 scf7180000302271:153782-154092 + CTCTCAAACTGTAACGTGTGA-----------------------AA-----------------------ATAAAAA---------AATTAAAGAAATGTTGAAA----------------------TCGAAAACCTGATATCAATAAATAAATAAA-T-AAATAA--------------------------------------------------------------------------AA-AATTTCA-AAACATTTTAAA-AAATTTAAAA----------------------AAAAAAAAAT-CC-----------------------------------G-TTAA-------AGTTTTCCCACCATTTGTT---------------------------------AT----TTTCCCATAGGA--ACACGAA-------TAAACTTTTGTAACTTTGTCATTACA-TTT-TTCTGCAA--ACT---GCTGCGA-A-A-TTAAAGTG-CCCAAAATTTTCTGGCTC--ATCTTTCCAGGCCCAACGACGGCAACATATAAACATATAAAATTCGA-CGACGACAG-AGCTAA
droAna3 scaffold_12916:13661394-13661764 + TTCTCAAACTGTCAGCTAA-----------------------GGGC---AG------------------ACGAAAAAAATTGAAAAGTCACACAACTCTTGAAATTCGATG--AATCGCAATGAAATGCTATCCCAAAT----------AA----AAAATAATA-----------------------AT-----------------------------------------TTTATCAATT---------------------A-AAATT--------------TATAAAAAAAAAAAAAGAAATATATTTTTA------------TGAA---ATTGGATGCAAGTTG--TG-GACTTGTTTTTCCCACAA-T-ATAAATTA-------AATTATTTCGCT-TGTCGCAGAA----TTTCCCATAAGCCCATATTGA-------ACACATTCTGAAATTCTA------CATTTT-TTTTGCA---ACT---TTTGCGA-A-A-TTAAAGTG-CCCAA--TTTTCTGGCTC--ATCTTTCCAGGCCCAACGACGGCAACATATAACAAAATAAAACTCGA-CGAGGACTG-TG-AAA
droBip1 scf7180000396535:631829-632184 + TTCTCAAACTGTCAGCCAA-----------------------GCGC---AG------------------TCGAAAA---------AGTCACACAACTTTTGAAATTCGATG--AATCGCAAAGAAATACTACCTCAAAT----------AA----AGAAAAATA-----------------------AT-----------------------------------------TTTATCAATT---------------------A-AAATTAAAAA----------------------AAAAAATAA---------TATATTTAAAATGAA---ATTGGATCCAAGTTG--TG-GAATTATTTTTCCCACAA-C-ATAATTTG-------AATTACTTCGCCAAGTCAGAGAA----TTTCCCATAAGCCCATATCGA-------ACACATTCTGAAATTCTA------CATTTT-TTTTGCA---ACT---TTTGCGA-A-A-TTATAGTG-CCCAA--TTTTGTGGCTC--ATCTTTCCAGGCCCAACGACGGCAACATATAA-A--TTAAAACTCGA-CGAGGACTG-TGAAAT
dp5 4_group4:1549944-1550242 + TTTTAAAACTGTAAAGTGC-------------------GCCTGGGCATCAGTGA-A-----------ACT------------------------------------CAAAG--TTCCCGAATGAAAG-------------------------------------------------CCATTCTAAAAATTTAATTAAAATATACGCCTTAGAATAACACTGTACCAAGAATAT----------------------------A-AAAT-ATAAAAATATATTA-------------------------------TATATATAAAA----TATTTTGGA---------------------------CACAAAT-ATGAAATA-------AAA-----------GTTT------------------------------AAAAATTAACAATTCT--------G------AAACCATTTTGGCT---AGT---GCAGCAA-A-A-TATAAATGACCCAC--TTTTCTGGCTC--ATCTTT-CAGGCCCAACGACGGCAACACAT------TTACAACTCGA-CGAGGACAG-AGAAAA
droPer2 scaffold_10:553850-554155 + TTTTAAAACTGTAAAGTGC-------------------GCCTGGGCATCAGTGA-A-----------ACT------------------------------------CAAAG--TTCCCGAATGAAAG-------------------------------------------------CCATTCTAAAAATTTAAATAAAATATACGCCTTAGAATAATACTGTACCAAGAATATAACAAAT---------------------A-AAAT-ATAAAAATATATTA-------------------------------TATATATAAAA----TATTTTGGA---------------------------CACAAAT-ATGAAATA-------AAA-----------GTTT------------------------------AAAAATTAACAATTCT--------G------AAACCATTTTGGCA---AGT---GCAGCAA-A-A-TATAAATGACCCAC--TTTTCTGGCTC--ATCTTT-CAGGCCCAACGACGGCAACACAT------TTACAACTCGA-CGAGGACAG-AGAAAA
droWil2 scf2_1100000004585:8363206-8363467 + TTGTCAAACTGTATCGC-----------------------TTAGAAGT----G--A-----------AAA------TAACTGA---------C---AATTAAAAA----------------------------------------------ACAA----CAATATAAAAACTGAAT----------------------------------------------------------------------------ATATTTGAAATA-------------AATTATACAAAAAAAC---------AAT-TTTTTAT--TATATTCCA----AATTTTGAA---------------------------AATAA---------------------------------------------ATTGCCAACAAA--ATATT-TACA----------------------------AATTCA-TTTAATA---AATTTAATTGCCA-T-A-TTTAAGTG-CAGAATTTTTTTTGGTTTTAATTTTTGCAGGCCCAACGACGGCAGCATAT------TTGAAATTTGA-CGAACATTG-ATATAA
droVir3 scaffold_12963:8561968-8562206 + CTCTCAAACTGTAACGTGCG-------CGT-------TGCTTGAACTG----C--A-----------ACT------GAAACA----------------------------GAATCGCAAAATGAAAA-------------------------------------------------CTTTT-TA------------------------------AATACTATATCGAAAATAA------ATTATTTTTG-AAATATT---------------------------------------------------------------------------------------------------------------------TTAATCAATTATT-----------------------TTAT---CCAACAAAA--A----------------------GTT-CTTTG------AAA-----TTTGTAAGAGAT---TTTGAAA-ATT-TTTAAGTG-CCTAC--TTTTCTGCC--------TTGCAGGC-CAGCGACGGCAACATAT------TTATAAGTTAA-CAAGGACAGCGGGAAA
droMoj3 scaffold_6500:1173998-1174237 + CTTTAAAACTGTACCGCGC------------------TACTTGAACTT----A--C-----------ATT------AAAAAA---------------------------------------------------------------------AAAA----AAAGAAAAGAATCAAATATACC-CA------------------------------AATACTGTAAAAAGA--------------------------------------------------------------------------------------------------------------AGTTA-TAAAACAACTT---TTGGCCATTCAC---------------------------------------ACAG---CAAAAAAGA--C----------------------GTT-TCTT-------AATATT-TTTCCAT---AAT---AATACATCATT-TTATAGTG-CATAC--TTTTCTGCCTC------TTGCAGGCCAAGCGACGGCAAAACATAA-T--TTTAAG-TCGATCAAGGACAGCAGGACA
droGri2 scaffold_15252:11756052-11756323 + CTTCAAAACTGTAACGTGCT-------TGT-------TGCCTGAACTT----G--A-----------AAT------AAAACA----------TATATATTAAAATTCAA--------------------------------------------------CAATAAAACTAG--------------------------------------------------------------------TA-AATTTCATAGACATTTTTGA-AAACTAAAAG----------------------AAAAAATAATATTACTA------------TCGA---GTAACAAGCTTTTTG--TA-GAAT---------------T-TTTAGTTT-------AT---------------------------GGG------------------------A-------GTG-ATGAG------AAAATT-TTTGACA---GGT---GACAAAA-A-A-ATAAAGTG-CCTAC--TTTTTTGCC--------TTTCAGA-CCATCGACGGCAACATT-AA-A--TTTTAAGTCAA-CGAGGACAGCAGGAAA

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
CTCTCAAACTGTCGCGTGTA---------------TATGCTTGGAAAT----G--A-----------AAT------GAAACG-----------------------------------------------------------------------------AAATACAAGAAT-------------------------------------------------------------------------------------------TA-------------AATCGT-TGAAAAAAAA-A-------------------------------------------AAAAA-TAAGCCAGCTCGATTTTCCCACAAAT-ATTAAATA-------AAATA----------------AT----ATTCCTCTAAGA--ATATT-TCC-----------------------------AATTTA-TTTTGCA---ACT---GTTGCGA-A-A-TTAAAGTG-CCCAA--TTCTCTGGCTC--ATCTTTCCAGGCCCAGCGACGGCAACATATAAAC--TTCAAATTCGA-CGAGGACAG-AGCAAASizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAAATTCGA-CGAGGACAG-AGCA..2312.00200100000000010000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCAAATTCGA-CGAGGACAG-A.....2111.00100100000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................C--TTCAAATTCGA-CGAGGAC.........1911.00100100000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCGA-CGAGGACAG-AGCAAA2111.00100100000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATTCGA-CGAGGACAG-AGCAAA2311.00100000001000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCAAATTCGA-CGAGGAC.........1811.00100100000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AC--TTCAAATTCGA-CGAGGACAG-AGC...2511.00100100000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCGACGGCAACATATAAAC--TTCA........................2411.00100001000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATAAAC--TTCAAATTCGA-CGAGGAC.........2611.00100100000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCGA-CGAGGACAG-AGC...1811.00100100000000000000
.........................................................................................................................................................................................................................................................................................GT-TGAAAAAAAA-A-------------------------------------------AAA............................................................................................................................................................................................................................................................16160.06100000010000000000
.............................................................................................................................................................................................................................................................................................GAAAAAAAA-A-------------------------------------------AAAAA-TA.......................................................................................................................................................................................................................................................17200.05100000000000001000
droSec2
CTCTCAAACTGTCGCGTGTA---------------TACGCTTGGAAAT----G--A-----------AAT------GAAACG-----------------------------------------------------------------------------AAATACAAGAAT-------------------------------------------------------------------------------------------TA-------------AATCGT-TGAAAAAAA--A-------------------------------------------AAAAA-TAAGCCAGCTCGATTTTCCCACAAAT-ATTAAATA-------AAATA----------------AT----ATTCCTCTAAGA--ATATT-TCC-----------------------------AATTTA-TTTTGCA---ACT---GTTGCGA-A-A-TTAAAGTG-CCCAA--TTCTCTGGCTC--ATCTTTCCAGGCCCAGCGACGGCAACATATAAAC--TTCAAATTCGA-CGAGGACAG-AGCAAASizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAC--TTCAAATTCGA-CGAGGACAG-AG....2511.0010010
dm3
CTCTCAAACTGTCGCGTGTA---------------TATGCTTGGAAAT----G--A-----------AAT------GAAACG-----------------------------------------------------------------------------AAATACAAGAAT-------------------------------------------------------------------------------------------TA-------------AATCGT-TGAAAA--------------------------------------------------AAAA-TAAGCCAGCTCGATTTTCCCACAAAT-ATTAAATA-------AAATA----------------AT----ATTCCTCTAAGA--ATATT-TCC-----------------------------AATTTA-TTTTGCA---ACT---GTTGCGA-A-A-TTAAAGTG-CCCAA--TTCTCTGGCTC--ATCTTTCCAGGCCCAGCGACGGCAACATATAAAC--TTCAAATTCGA-CGAGGACAG-AGCAAASizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATTCGA-CGAGGACAG-AGC...2019.0090000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000070100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................TGGAAAT----G--A-----------AAT------GAAACG-----------------------------------------------------------------------------AA.................................................................................................................................................................................................................................................................................................................................................................................................................................................2015.0050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................TGCTTGGAAAT----G--A-----------AAT------GAAA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2013.0030000000000000000000000000000000000000000000000000000000000120000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAC--TTCAAATTCGA-CGAGGACAG-AGC...2613.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000
.....................................TGCTTGGAAAT----G--A-----------AAT------GAAACG-----------------------------------------------------------------------------A..................................................................................................................................................................................................................................................................................................................................................................................................................................................2313.0030000000000000000000000000000000000000000000000000000000001020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................TGCTTGGAAAT----G--A-----------AAT------GAAACG-----------------------------------------------------------------------------AAA................................................................................................................................................................................................................................................................................................................................................................................................................................................2513.0030000000000000000000000000000000000000000000000000000000002010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AC--TTCAAATTCGA-CGAGGACAG-AGCA..2612.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000
.....................................TGCTTGGAAAT----G--A-----------AAT------GAAACG-----------------------------------------------------------------------------AAAT...............................................................................................................................................................................................................................................................................................................................................................................................................................................2612.0020000000000000000000000000000000000000000000000000000000001100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................ATTCCTCTAAGA--ATATT-TCC-----------------------------................................................................................................................................2012.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................TGCTTGGAAAT----G--A-----------AAT------GAAACG-----------------------------------------------------------------------------...................................................................................................................................................................................................................................................................................................................................................................................................................................................2212.0020000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................TGCTTGGAAAT----G--A-----------AAT------GAAACG-----------------------------------------------------------------------------AA.................................................................................................................................................................................................................................................................................................................................................................................................................................................2412.0020000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATAAAC--TTCAAATTCGA-CGAGGAT.........2612.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCAAATTCGA-CGAGGACAG-AGCAA.2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATAAAC--TTCAAATTCGA-CGA.............2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................AA--------------------------------------------------AAAA-TAAGCCAGCTCGAT...........................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCGA-CGAGGACAG-AGC...1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAC--TTCAAATTCGA-CGAGGACA........2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATTCGA-CGAGGACAG-AGCAAA2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAAAC--TTCAAATTCGA-CGAT............2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCAAATTCGA-CGAGGACAG-AGCAAA2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................GCTTGGAAAT----G--A-----------AAT------GAAACG-----------------------------------------------------------------------------...................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCAA--TTCTCTGGCTC--ATCTTT..........................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AC--TTCAAATTCGA-CGAGGACAG-AGC...2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGCA---ACT---GTTGCGA-A-A-TTAAAGA......................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAAATTCGA-CGAGGACAG-AGA...2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAACATATAAAC--TTCAAATTCGA-CG..............2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGA-CGAGGACAG-AGCA..1711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATAAAC--TTCAAATTCGA-CGA.............2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAAATTCGA-CGAGGACAG-AGC...2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000
...............................................................................................................................................................................................................................................................................................AAA--------------------------------------------------AAAA-TAAGCCAGCTCGA............................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AC--TTCAAATTCGA-CGAGGAC.........2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACATATAAAC--TTCAAATTCGA-CGAG............2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000
.....................................TGCTTGGAAAT----G--A-----------AAT------GAAACG-----------------------------------------------------------------------------AAATACAA...........................................................................................................................................................................................................................................................................................................................................................................................................................................3011.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATTCGA-CGAGGACAG-AGCAA.2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAATTCGA-CGAGGACAG-AGC...2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATTCGA-CGAGGACAG-AG....1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAC--TTCAAATTCGA-CGAGGACAG-AGCA..2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACGGCAACATATAAAC--T...........................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATAAAC--TTCAAATTCGA-CGAGG...........2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCGA-CGAGGACAG-AGCAAA2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................GTA---------------TATGCTTGGAAAT----G--A-----------AAT------GAAAC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCGA-CGAGGACAG-AGCAA.1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAAAC--TTCAAATTCGA-CGAGGACAG-AGC...2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATTCGA-CGAGGACAG-AGCA..2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000
droEre2
TTTTCAAACTGTCGCGTGTACGAGAAATATTCCGATATGCTTGGAAAT----T--A-----------AAT------GAAACG-----------------------------------------------------------------------------AAATACAACCAT-------------------------------------------------------------------------------------------TA-------------AATCGT-TGAAAG-------------------------------------------------ACAAA-TAAGCCAGCTTGATTTTCCCACGAAT-ATTAAATA-------AAATA----------------AT----ATTCCTCTAAGA--ATATT-TTT-----------------------------AATTTA-TTTTGCA---ACT---GTTGCGA-A-A-TTAAAGTG-CCCAA--TTTTTTGGCTC--ATCTTTCCAGGCCCAGCGACGGCGACATATAAAA--TTCAAATTCGA-CGAGGACAG-AGCAAASizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATTCGA-CGAGGACAG-AGC...2012.0020101000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAATTCGA-CGAGGACAG-AGC...2112.0020101000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAAAA--TTCAAATTCGA-CGAGGACAG-A.....2711.0010100000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCGA-CGAGGACAG-AGCAA.2011.0010000100
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATTCGA-CGAGGACAG-AG....1811.0011000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCGA-CGAGGACAG-AGC...1811.0010001000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A--TTCAAATTCGA-CGAGGACAG-AGCA..2511.0011000000
droYak3
TTCTCAAACTGTCGCGTGTACAAGAAATATTCCGATATGCTTGGAAAT----T--A-----------AAT------AATACG-----------------------------------------------------------------------------AAATACAACCAT-------------------------------------------------------------------------------------------TA-------------AATCGT-TGACAAA-------------------------------------------------AAAA-T--GCCAGCTTAATTTTCCCACCAAT-ATTAAATA-------AAATA----------------AT----ATTCCTCTAAGA--ATATT-TCC-----------------------------AATTCA-TTTTGCA---ACT---GTTGCGA-A-A-TTAAAGTG-CCCAA--TTTTCTGGCTC--ATCTTTCCAGGCCCAGCGACGGCAACATATAAAA--TTCAAATTCGA-CGAAGACAG-AGCAAASizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAAATTCGA-CGAAGACAG-AGC...2211.00100100000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTC--ATCTTTCCAGGCCCAGCGAC............................................2411.00100100000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATTCGA-CGAAGACAG-AGCA..2111.00101000000000
droEug1
TTCTCAAACTGCAGCGAAA-AAAGAACTGTTTCCTTATGGTTGAAAAT----G--A-----------AAT------AAAATG-----------------------------------------------------------------------------AAA----AGA-----------------------------------------------------------------------------------------------------------------T-TAAAAT-------------------------------------------------AAAAA-TGAAGAAACTTGATTTTCCCACAAAT-ATTAAATG-------AAATA----------------AA----ATTCACATAAGA--ATACCGT-------AAAAATTCTGTAACATTG-----AAAATTA-TTTTGCA---ACT---GTTGCGA-A-A-TTAAAGTG-CCCAA--TTTTCTGGCTC--ATCTTTCCAGGCCCAGCGACGGCAACATATAA-A--TTAATATTCGA-CGAGGACAG-AGCAAASizeHit CountTotal NormTotal
No Reads
droBia1
TTCCCAAACTGTAGCGCGAAAA---GCTGTTCCTTTTCGCTCGAACCT----T--A--------GGAATT------GAGAAA-----------------------------------------------------------------------------ATGTA--------------------------------------------------------------------------------------------------------------------------AAA--------------------------------------------------AACAC-TTAG-------GCGTTTCCCACAAAT-ATTTAATG--------------------------------------TCGCAAGA--ACACCGG-------TCAAGTTCTGTAGTTTTA-----AAATGTA-TTTTGCC---AAT---GCTGCGA-A-A-TTAAAGTG-CCCAA--TTTTCTGGCTC--ATCTTTCCAGGCCCAACGACGGCAACATATAA-A--TTAATATTCGA-CGAGAACCG-AGAAAASizeHit CountTotal NormTotal
No Reads
droTak1
TTCTCAAACTGTAACGTGAAAATGAAATGTTCCTTCAAGCTCGGACCT----T--A--------AA-AAT------GAAACG-----------------------------------------------------------------------------AAATACAAGCAT--------------------------------------------------------------------------------------------------------------------AA--------------------------------------------------AAAAA-TAAAGCAACTTGATTTTCCCACAAAT-ATTAAATA-------AC---------------------------TGC------------------------C-------ACT-CTTTG------AAATTA-TTCTGCA---ACT---GTTGCGA-A-A-TTAAAGTG-CCCAA--TTTTCTGGCTC--ATCTTTCCAGGCCCAACGACGGCAACATATAA-A--TTAATATTCGA-CGAGAACCG-AGAAAASizeHit CountTotal NormTotal
No Reads
droEle1
CTCTCAAACTGTAACGTGAAAAATAAATGT-------TACTTGGACCA----C--AAATAAATAAA-TAT----------------------------------------GAA------------ATGCAAAACCAAAG----------AA----AATAAAATACCAACAT-------------------------------------------------------------------------------------------TA-------------AATAAA-AAAAA--------------------------------------------------AAAAA-TAAAGCAACTT-ATTTTCCCACAAAT-ATTATATG-------AAACA----------------AA----TTTCCCATAAGA--ACACCGT-------TCAACTTTTATA-CTTTGT----TAGTTCA-TTTTGCA---ACT---GTTGCAA-A-AATTAAAGCG-CCGAA--TTTTCTGGCTC--ATCTTTCCAGGCCCAACGACGGCAACATATAAAATAATAAAATTCGA-CGAGGACAG-AGCAAASizeHit CountTotal NormTotal
No Reads
droRho1
TTCTCAAACTGTACCGTCAAAAATTACTGT-------TACTTGGACCA----C--AAAAAGCGGAA-AAA----------------------------------------GAA------------ATGCAATACCAAAT----------AA----AATAAAATACCAACGT-------------------------------------------------------------------------------------------TA-------------AATCAT-TAAAAA--------------------------------------------------AAAT-TCAAGAAACTCGATTTTCCCACAAAT-ATTAAATG-------AAACT----------------TA----TTTTCCATAAAA--ATACCGT-------TCAACTTTTGTACTTTTA-----AAATTTA-TTTTGCA---ACT---GTTGTGA-A-A-TTTAAGTG-CTCAA--TTTTCTGGCTC--ATCTTTCCAGGCCCAACGACGGTAACATAAAA-A--TTAATATTCAA-CGAGGACAG-AGCAAASizeHit CountTotal NormTotal
No Reads
droFic1
CTCCAAAACTGTAGCGCGAAATAGAAATGT-------TGCTCGAACAA----C-CAAAAATCTGAA-AAT----------------------------------------GAT------------ATGCAAAAGCAAAA----------AT----AAAAAAATACAACCAC-------------------------------------------------------------------------------------------TA-------------AATCATATGAAAAAAA---------------------------------------------------------------AATTTTCCCACACAT-ATTAAATA-------AAACG----------------AG----TCTGCCATAAGA--AAATCGT-------AAAAATTCTGTTACTTTG------AAATTA-TTTTGCA---ACT---GCTGCGA-A-A-TTAAAGTG-CCCAA--TTTTCTGGCTC--ATCTTTCCAGGCCCAACGACGGCAACATATAA-A--TTAAAATTCGA-CGAGGACAG-AGCAAASizeHit CountTotal NormTotal
No Reads
droKik1
CTCTCAAACTGTAACGTGTGA-----------------------AA-----------------------ATAAAAA---------AATTAAAGAAATGTTGAAA----------------------TCGAAAACCTGATATCAATAAATAAATAAA-T-AAATAA--------------------------------------------------------------------------AA-AATTTCA-AAACATTTTAAA-AAATTTAAAA----------------------AAAAAAAAAT-CC-----------------------------------G-TTAA-------AGTTTTCCCACCATTTGTT---------------------------------AT----TTTCCCATAGGA--ACACGAA-------TAAACTTTTGTAACTTTGTCATTACA-TTT-TTCTGCAA--ACT---GCTGCGA-A-A-TTAAAGTG-CCCAAAATTTTCTGGCTC--ATCTTTCCAGGCCCAACGACGGCAACATATAAACATATAAAATTCGA-CGACGACAG-AGCTAASizeHit CountTotal NormTotal
No Reads
droAna3
TTCTCAAACTGTCAGCTAA-----------------------GGGC---AG------------------ACGAAAAAAATTGAAAAGTCACACAACTCTTGAAATTCGATG--AATCGCAATGAAATGCTATCCCAAAT----------AA----AAAATAATA-----------------------AT-----------------------------------------TTTATCAATT---------------------A-AAATT--------------TATAAAAAAAAAAAAAGAAATATATTTTTA------------TGAA---ATTGGATGCAAGTTG--TG-GACTTGTTTTTCCCACAA-T-ATAAATTA-------AATTATTTCGCT-TGTCGCAGAA----TTTCCCATAAGCCCATATTGA-------ACACATTCTGAAATTCTA------CATTTT-TTTTGCA---ACT---TTTGCGA-A-A-TTAAAGTG-CCCAA--TTTTCTGGCTC--ATCTTTCCAGGCCCAACGACGGCAACATATAACAAAATAAAACTCGA-CGAGGACTG-TG-AAASizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAAAATAAAACTCGA-CGAGGAC.........2311.001010000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACGGCAACATATAACAAAATAAAACT....................2711.001010000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATAAAACTCGA-CGAGGACT........2111.001010000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTCGA-CGAGGACTG-TG-AA.1911.001010000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAAAACTCGA-CGAGGACTG-T.....2111.001010000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAACTCGA-CGAGGACTG-T.....1911.001010000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAAAACTCGA-CGAGGACT........1911.001010000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAAAACTCGA-CGAGGACTG-TG-A..2311.001010000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATAACAAAATAAAACTCGA-CGAGGAC.........2811.001010000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATATAACAAAATAAAACTCGA-CGAGGA..........2811.001010000
............................................................................................................................................................................................................................................................................................TAAAAAAAAAAAAAGAAA....................................................................................................................................................................................................................................................................................................18200.051010000
droBip1
TTCTCAAACTGTCAGCCAA-----------------------GCGC---AG------------------TCGAAAA---------AGTCACACAACTTTTGAAATTCGATG--AATCGCAAAGAAATACTACCTCAAAT----------AA----AGAAAAATA-----------------------AT-----------------------------------------TTTATCAATT---------------------A-AAATTAAAAA----------------------AAAAAATAA---------TATATTTAAAATGAA---ATTGGATCCAAGTTG--TG-GAATTATTTTTCCCACAA-C-ATAATTTG-------AATTACTTCGCCAAGTCAGAGAA----TTTCCCATAAGCCCATATCGA-------ACACATTCTGAAATTCTA------CATTTT-TTTTGCA---ACT---TTTGCGA-A-A-TTATAGTG-CCCAA--TTTTGTGGCTC--ATCTTTCCAGGCCCAACGACGGCAACATATAA-A--TTAAAACTCGA-CGAGGACTG-TGAAATSizeHit CountTotal NormTotal
No Reads
dp5
TTTTAAAACTGTAAAGTGC-------------------GCCTGGGCATCAGTGA-A-----------ACT------------------------------------CAAAG--TTCCCGAATGAAAG-------------------------------------------------CCATTCTAAAAATTTAATTAAAATATACGCCTTAGAATAACACTGTACCAAGAATAT----------------------------A-AAAT-ATAAAAATATATTA-------------------------------TATATATAAAA----TATTTTGGA---------------------------CACAAAT-ATGAAATA-------AAA-----------GTTT------------------------------AAAAATTAACAATTCT--------G------AAACCATTTTGGCT---AGT---GCAGCAA-A-A-TATAAATGACCCAC--TTTTCTGGCTC--ATCTTT-CAGGCCCAACGACGGCAACACAT------TTACAACTCGA-CGAGGACAG-AGAAAASizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCGA-CGAGGACAG-AGAAA.1911.0010000010000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACTCGA-CGAGGACAG-AGAAA.2111.0010000010000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCAACGACGGCAACACAT------TTA.........................2111.0010000100000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTCGA-CGAGGACAG-AGAAA.2011.0010100000000
droPer2
TTTTAAAACTGTAAAGTGC-------------------GCCTGGGCATCAGTGA-A-----------ACT------------------------------------CAAAG--TTCCCGAATGAAAG-------------------------------------------------CCATTCTAAAAATTTAAATAAAATATACGCCTTAGAATAATACTGTACCAAGAATATAACAAAT---------------------A-AAAT-ATAAAAATATATTA-------------------------------TATATATAAAA----TATTTTGGA---------------------------CACAAAT-ATGAAATA-------AAA-----------GTTT------------------------------AAAAATTAACAATTCT--------G------AAACCATTTTGGCA---AGT---GCAGCAA-A-A-TATAAATGACCCAC--TTTTCTGGCTC--ATCTTT-CAGGCCCAACGACGGCAACACAT------TTACAACTCGA-CGAGGACAG-AGAAAASizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAT------TTACAACTCGA-CGAGGACAG-A.....2512.002200000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAT------TTACAACTCGA-CGAG............1812.002200000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AT------TTACAACTCGA-CGAGGACAG-AGG...2511.001100000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACGACGGCAACACAT------TTACAACTCGA-................2811.001100000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTACAACTCGA-CGAGGACAG-A.....2111.001100000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACACAT------TTACAACTCGA-CGAGGAC.........2411.001001000
droWil2
TTGTCAAACTGTATCGC-----------------------TTAGAAGT----G--A-----------AAA------TAACTGA---------C---AATTAAAAA----------------------------------------------ACAA----CAATATAAAAACTGAAT----------------------------------------------------------------------------ATATTTGAAATA-------------AATTATACAAAAAAAC---------AAT-TTTTTAT--TATATTCCA----AATTTTGAA---------------------------AATAA---------------------------------------------ATTGCCAACAAA--ATATT-TACA----------------------------AATTCA-TTTAATA---AATTTAATTGCCA-T-A-TTTAAGTG-CAGAATTTTTTTTGGTTTTAATTTTTGCAGGCCCAACGACGGCAGCATAT------TTGAAATTTGA-CGAACATTG-ATATAASizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAT------TTGAAATTTGA-CGAAC...........2012.00220000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTTTTTTGGTTTTAATTTTTGCA.......................................................2511.00100010
...............GC-----------------------TTAGAAGT----G--A-----------AAA------TAACT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100010
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T------TTGAAATTTGA-CGAACATTG-......2111.00101000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAATA---AATTTAATTGCCA-T-A-.............................................................................................2111.00100010
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CA-T-A-TTTAAGTG-CAGAATTTTTT.........................................................................2311.00100010
.................................................................................................................................................................ATATAAAAACTGAAT----------------------------------------------------------------------------ATATTT................................................................................................................................................................................................................................................................................................................................................2111.00100010
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A-T-A-TTTAAGTG-CAGAATTTTTTTTGG.....................................................................2611.00100010
droVir3
CTCTCAAACTGTAACGTGCG-------CGT-------TGCTTGAACTG----C--A-----------ACT------GAAACA----------------------------GAATCGCAAAATGAAAA-------------------------------------------------CTTTT-TA------------------------------AATACTATATCGAAAATAA------ATTATTTTTG-AAATATT---------------------------------------------------------------------------------------------------------------------TTAATCAATTATT-----------------------TTAT---CCAACAAAA--A----------------------GTT-CTTTG------AAA-----TTTGTAAGAGAT---TTTGAAA-ATT-TTTAAGTG-CCTAC--TTTTCTGCC--------TTGCAGGC-CAGCGACGGCAACATAT------TTATAAGTTAA-CAAGGACAGCGGGAAASizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAT------TTATAAGTTAA-CAAGGACAGC......2511.001000000000000000010000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGCC--------TTGCAGGC-CAGCGACG...........................................2111.001000000100000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AT------TTATAAGTTAA-CAAGGACAGCGGGA..2711.001000000000000001000000000000000000000000000000000000000000000000
droMoj3
CTTTAAAACTGTACCGCGC------------------TACTTGAACTT----A--C-----------ATT------AAAAAA---------------------------------------------------------------------AAAA----AAAGAAAAGAATCAAATATACC-CA------------------------------AATACTGTAAAAAGA--------------------------------------------------------------------------------------------------------------AGTTA-TAAAACAACTT---TTGGCCATTCAC---------------------------------------ACAG---CAAAAAAGA--C----------------------GTT-TCTT-------AATATT-TTTCCAT---AAT---AATACATCATT-TTATAGTG-CATAC--TTTTCTGCCTC------TTGCAGGCCAAGCGACGGCAAAACATAA-T--TTTAAG-TCGATCAAGGACAGCAGGACASizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAGTG-CATAC--TTTTCTGCCTC------TTGCAG......................................................2711.001100000
droGri2
CTTCAAAACTGTAACGTGCT-------TGT-------TGCCTGAACTT----G--A-----------AAT------AAAACA----------TATATATTAAAATTCAA--------------------------------------------------CAATAAAACTAG--------------------------------------------------------------------TA-AATTTCATAGACATTTTTGA-AAACTAAAAG----------------------AAAAAATAATATTACTA------------TCGA---GTAACAAGCTTTTTG--TA-GAAT---------------T-TTTAGTTT-------AT---------------------------GGG------------------------A-------GTG-ATGAG------AAAATT-TTTGACA---GGT---GACAAAA-A-A-ATAAAGTG-CCTAC--TTTTTTGCC--------TTTCAGA-CCATCGACGGCAACATT-AA-A--TTTTAAGTCAA-CGAGGACAGCAGGAAASizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads

Generated: 05/19/2015 at 02:26 AM