ID:

dsi_5033

 Coordinate:

3l:11719151-11719300 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

Flybase annnotation

intergenic

No Repeatable elements found

Sense Strand Reads

AGCTCAGATCGCATGCGCAACGGAACGCGGCGCTGGCGCGCTACATGCAGGTGAGTGCGTACTCTAAGATACTTTTCGAAATTCATCATGCTCAGGTGCAGCATGGGGCAAACAGTGCTGGAAAGTATCTGCTTTGGTTGAGCACATTCAAGGGGTTTCCCTGTGAACAATTGGAAGGCTAGGAATAATTGTAGATACTAGCACTATATCTTTGTATCTAAACACAAACTATGATTCAAATTTGCATTTA
**************************************************....((((..(((...(((((((((((........(((((((.......)))))))((((.....))))))))))))))).....)))...)))).((((((((....)))).))))((((((............)))))).........************************************************** 		Read size # Mismatch Hit Count Total Norm Total M024
male body		 M025
embryo
 M023
head
 SRR618934
dsim w501 ovaries
 SRR553486
Makindu_3 day-old ovaries
 SRR553485
Chicharo_3 day-old ovaries
 SRR553488
RT_0-2 hours eggs
 SRR553487
NRT_0-2 hours eggs
 M053
female body
....................................................................................................................................................................GAACAATTGGAGGGCAAGG................................................................... 19 2 7 12.71 89 79 1 9 0 0 0 0 0 0
.........CGCATGCGCAACGGAACGCGGCGCTG....................................................................................................................................................................................................................... 26 0 1 2.00 2 0 2 0 0 0 0 0 0 0
...............................................................................................................................................................................GGGCTAGGAATAATTGATGATA..................................................... 22 3 1 1.00 1 0 0 0 1 0 0 0 0 0
.....................................................................................................................................................AAGGGGACTCCCTGTGA.................................................................................... 17 2 5 0.20 1 0 0 0 0 1 0 0 0 0
...............................................................................................................................................................CCTGTGAATACTTTGAAGGC....................................................................... 20 3 5 0.20 1 1 0 0 0 0 0 0 0 0
....................................................................................................................................................................GAACAATTGGAGGGC....................................................................... 15 1 12 0.17 2 0 0 0 1 1 0 0 0 0
...............CGCAACTGAACGCGG............................................................................................................................................................................................................................ 15 1 7 0.14 1 0 0 0 0 1 0 0 0 0
.........................................................................................................................................................GGTTTCCATGTGAACAGTA.............................................................................. 19 3 11 0.09 1 0 0 0 0 1 0 0 0 0
.....................................................................................................................................TTGGTTGTGCACGTTCA.................................................................................................... 17 2 11 0.09 1 0 0 0 0 0 1 0 0 0
.......................................................................................................................................GGTTGTGCACGTTCAAG.................................................................................................. 17 2 11 0.09 1 0 0 0 0 1 0 0 0 0
.........................................................................................................................................................................................................CACTATATCGTTGTA.................................. 15 1 12 0.08 1 0 0 0 0 0 1 0 0 0
.................................................GGTGACTGCGTACTCTT........................................................................................................................................................................................ 17 2 14 0.07 1 0 0 0 0 0 0 1 0 0
...................................GCACGCTATATGTAGGTGA.................................................................................................................................................................................................... 19 3 14 0.07 1 0 0 0 0 0 0 0 1 0
....................................................................................................................................................................................AGGAATTTTTGTAGATACCA.................................................. 20 3 20 0.05 1 0 0 0 0 0 0 1 0 0
....................................................................................................................................................................GAACAATTGTAGGGCAAGG................................................................... 19 3 20 0.05 1 1 0 0 0 0 0 0 0 0
.........................CGCCTCGGTGGCGCGCTA............................................................................................................................................................................................................... 18 3 20 0.05 1 0 0 0 0 0 0 0 0 1
...................................................................................................................................................TCAAGGCGTTTCCCCCTGA.................................................................................... 19 3 20 0.05 1 0 0 0 1 0 0 0 0 0

Anti-sense strand reads

TCGAGTCTAGCGTACGCGTTGCCTTGCGCCGCGACCGCGCGATGTACGTCCACTCACGCATGAGATTCTATGAAAAGCTTTAAGTAGTACGAGTCCACGTCGTACCCCGTTTGTCACGACCTTTCATAGACGAAACCAACTCGTGTAAGTTCCCCAAAGGGACACTTGTTAACCTTCCGATCCTTATTAACATCTATGATCGTGATATAGAAACATAGATTTGTGTTTGATACTAAGTTTAAACGTAAAT
**************************************************....((((..(((...(((((((((((........(((((((.......)))))))((((.....))))))))))))))).....)))...)))).((((((((....)))).))))((((((............)))))).........************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553488
RT_0-2 hours eggs
 SRR553487
NRT_0-2 hours eggs
 SRR553486
Makindu_3 day-old ovaries
 SRR618934
dsim w501 ovaries
 SRR553485
Chicharo_3 day-old ovaries
...................................................................ATATGAAAAGGTTTAAGAAGTACGAGT............................................................................................................................................................ 27 3 1 1.00 1 1 0 0 0 0
..GAGTCTAGCATACGC......................................................................................................................................................................................................................................... 15 1 4 0.50 2 2 0 0 0 0
.................................................................................................................................................................................................................GAAACCTAGATTCTTGTTTGAT................... 22 3 2 0.50 1 0 1 0 0 0
................................................................ATTCTATGAGAAGCTT.......................................................................................................................................................................... 16 1 3 0.33 1 1 0 0 0 0
................................................................................................................................................GTAAGTTCGCCAGAGGG......................................................................................... 17 2 6 0.17 1 1 0 0 0 0
..................................................................TCTATGAGAAGCTTT......................................................................................................................................................................... 15 1 20 0.15 3 1 0 2 0 0
...............................................................................TTAAGTAGTACGAGA............................................................................................................................................................ 15 1 14 0.07 1 0 0 0 1 0
..............................................................AAATTCTATGAGAAGCTT.......................................................................................................................................................................... 18 2 20 0.05 1 1 0 0 0 0
...........................................................................................................................................................................................................................................AGTTTAAACGGAAAT 15 1 20 0.05 1 0 0 0 0 1

Generated: 04/24/2015 at 10:36 AM