ID:

dsi_5013

 Coordinate:

3r:4741090-4741365 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

Flybase annnotation

intergenic

No Repeatable elements found

Sense Strand Reads

ACTAACTAATTTGCTTTTGGAGTCTCTTGATTGAGCAATTTGTGCGAAAGGTAAAACTTTAATTTATTATTTTAAGTGGCTTAAAACAATTTTTTATTTCAAGCAACATATTTAGAAAGTGTGATATTTCTTTCACATGATTTCCCTTTGACGAAAACATATCATATCTCCATGCTCCAATTTCATCAGTAATAAAGTTTGACAAATTTGTCAAATCCATCTAATGTGTCCATTTAGGGCTGCCACCACAATCAGCATTGTTATGCCATAAAAAATAGGAGCTGCCTGGAAGATGCACCCATTAATACACCCATATGTTTATACAGATCGTAAAATCTTGATAAGGAGAAGCACAAATTCGTCAGGAGAAAGCATT
**************************************************...................(((((((((((((.(((.((....)).))).))))....))))))))).((((((........))))))................((((((((..((((((((.(((((.((((.............((((((((....)))))))).........((((((.....)))).))...........((((....))))......)))).)))))....))).))))).................))))))))......************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR618934
dsim w501 ovaries
 SRR902009
testis
 SRR553485
Chicharo_3 day-old ovaries
 SRR553487
NRT_0-2 hours eggs
 GSM343915
embryo
 M023
head
..................................................................................................................................................................................................................................................................................................................................................................AAATTCGTCAGGAGAAAGCAT. 21 0 1 2.00 2 0 2 0 0 0 0
................................................................................................................TAGAAAGAGCGATATTTCTTT................................................................................................................................................................................................................................................... 21 2 1 1.00 1 1 0 0 0 0 0
....................................................................................................................................................................................................................................................................................AGGAGCTGACTGGAAGA................................................................................... 17 1 1 1.00 1 1 0 0 0 0 0
...................................................................................................................................................................................................................................................................................AAGGAGCTGACTGGAAGA................................................................................... 18 2 5 0.40 2 2 0 0 0 0 0
........................................................................................................................GTGATATTTCTTTTAGA............................................................................................................................................................................................................................................... 17 2 20 0.40 8 0 0 7 1 0 0
...........................................................................................................................................................................................................................................................................ATTAAAAATAGGAGCTGCCA......................................................................................... 20 2 3 0.33 1 0 0 0 0 1 0
..........................TTGAGTGAGCACTTTGTACGA......................................................................................................................................................................................................................................................................................................................................... 21 3 4 0.25 1 0 0 0 1 0 0
.....................................................................................................................................................................................................................................................................TTTGCTATAAACAATAGGAGC.............................................................................................. 21 3 6 0.17 1 0 0 0 0 0 1
..................................................................................................................................................................................................................................................................................ATAGGAGCTGCATGGAATTT.................................................................................. 20 3 13 0.15 2 0 2 0 0 0 0
....................................................................................................................................................................................................................................................................................AGGAGCTGACTGGAA..................................................................................... 15 1 18 0.11 2 2 0 0 0 0 0
..................................................................................................................................................................................................................................................................................ATAGGAGCTGACTGGGA..................................................................................... 17 2 13 0.08 1 1 0 0 0 0 0
.........................................................................................................................................................................................................................................................AATCAGGATTGTTATGA.............................................................................................................. 17 2 15 0.07 1 0 0 0 1 0 0
..............................................................................................................................................................................................................................................................................................................................TTATTCAGATCGTAA........................................... 15 1 18 0.06 1 0 0 1 0 0 0
..............................................................................................................................................................................................AATAAGGTTTGACAGAT......................................................................................................................................................................... 17 2 20 0.05 1 1 0 0 0 0 0
...................................................................................................................................................................................................................................................................................AAGGAGCTGACTGGAAGAA.................................................................................. 19 3 20 0.05 1 1 0 0 0 0 0
............................GATTGAGCAATCTTTGC........................................................................................................................................................................................................................................................................................................................................... 17 2 20 0.05 1 1 0 0 0 0 0
...................................................................................................................................................................................................................................................................................AAGGAGCTGACTGGAAG.................................................................................... 17 2 20 0.05 1 1 0 0 0 0 0

Anti-sense strand reads

TGATTGATTAAACGAAAACCTCAGAGAACTAACTCGTTAAACACGCTTTCCATTTTGAAATTAAATAATAAAATTCACCGAATTTTGTTAAAAAATAAAGTTCGTTGTATAAATCTTTCACACTATAAAGAAAGTGTACTAAAGGGAAACTGCTTTTGTATAGTATAGAGGTACGAGGTTAAAGTAGTCATTATTTCAAACTGTTTAAACAGTTTAGGTAGATTACACAGGTAAATCCCGACGGTGGTGTTAGTCGTAACAATACGGTATTTTTTATCCTCGACGGACCTTCTACGTGGGTAATTATGTGGGTATACAAATATGTCTAGCATTTTAGAACTATTCCTCTTCGTGTTTAAGCAGTCCTCTTTCGTAA
**************************************************...................(((((((((((((.(((.((....)).))).))))....))))))))).((((((........))))))................((((((((..((((((((.(((((.((((.............((((((((....)))))))).........((((((.....)))).))...........((((....))))......)))).)))))....))).))))).................))))))))......************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553486
Makindu_3 day-old ovaries
 SRR553487
NRT_0-2 hours eggs
 O001
Testis
 SRR902009
testis
 M053
female body
 SRR553488
RT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
.............................................................................................................................................................................................................TAAAGAGTTTAGGTAGAT......................................................................................................................................................... 18 1 1 1.00 1 1 0 0 0 0 0 0
...................................................ATTTTGAAGTTAGATAATAAAAT.............................................................................................................................................................................................................................................................................................................. 23 2 2 1.00 2 0 2 0 0 0 0 0
......................................................................................................................................................................................................................................................................TACGGTATTTTTTATCCTCGA............................................................................................. 21 0 1 1.00 1 0 0 1 0 0 0 0
.....................................TAAACACGCTTTCCATAATGA.............................................................................................................................................................................................................................................................................................................................. 21 2 2 0.50 1 0 0 0 1 0 0 0
.............................................................................................................................................................................................................................................CCGGCGGTGGTGTTAGGCGT....................................................................................................................... 20 2 2 0.50 1 1 0 0 0 0 0 0
................................................................................................................................................................................................ATTTCAAACTGTTTAATC...................................................................................................................................................................... 18 1 3 0.33 1 0 0 0 0 1 0 0
..............................................................................................................................................................................................................................................................CGTAACAAGACGGTCTTTT....................................................................................................... 19 2 4 0.25 1 1 0 0 0 0 0 0
..................................................................................................................................................................................TTAAACTAGTCATTAT...................................................................................................................................................................................... 16 1 8 0.13 1 0 1 0 0 0 0 0
............................................................................................................................................................................ACGGGGTTAAAGTAG............................................................................................................................................................................................. 15 1 13 0.08 1 0 0 0 0 0 0 1
..................................................................................................................................................................................TTAGAGTAGTCATAATTT.................................................................................................................................................................................... 18 2 14 0.07 1 0 0 0 0 0 1 0
................................................................................................................................................................................................................................................GCGGTGGTGTTAGGCGTAGC.................................................................................................................... 20 3 16 0.06 1 1 0 0 0 0 0 0
..........................................................................................AAAAAAAAAGTTTGTTGTAT.......................................................................................................................................................................................................................................................................... 20 2 16 0.06 1 1 0 0 0 0 0 0
...............................................................................................................................................................................................................................................GGCGGTGGTGTTAGGCGT....................................................................................................................... 18 2 20 0.05 1 1 0 0 0 0 0 0
..................................................................................................................................................................................TTAAACTAGTCATTA....................................................................................................................................................................................... 15 1 20 0.05 1 0 0 0 0 0 1 0

Generated: 04/24/2015 at 10:26 AM