ID:

dsi_5008

 Coordinate:

3r:10715295-10715354 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

Flybase annnotation

intergenic

No Repeatable elements found

Sense Strand Reads

GGCAGGATCTGGAGGTTCCCCGGACAGTGGACCAGCCACAGATCCAAATGGTATGTTTAAAAAGCATCCTGAAGTCCGCAGATTTGACATGTTTTCCTTCTCTCTTGCAGGTTCCGTGGGCTTCAAGCGATTCCTTTACGTGCTCTTCTTCTTTGTGTTG
**************************************************..........(((((((....(((((....)))))...)))))))...............************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553487
NRT_0-2 hours eggs
 M025
embryo
 M053
female body
 M024
male body		 SRR553488
RT_0-2 hours eggs
 SRR553486
Makindu_3 day-old ovaries
.....................................................TGTTGAAAAAGAATCCGGAAGT..................................................................................... 22 3 1 2.00 2 2 0 0 0 0 0
...................CCGGACAGTGGACCAGCCACA........................................................................................................................ 21 0 1 1.00 1 0 1 0 0 0 0
..........GGAGGTTCCCCGGACAGTGGACCAGC............................................................................................................................ 26 0 1 1.00 1 0 0 0 1 0 0
......ATCTGGAGGTTCCCCGGACA...................................................................................................................................... 20 0 1 1.00 1 0 0 1 0 0 0
................TCCCCGGACAGTGGACCAGCCACA........................................................................................................................ 24 0 1 1.00 1 0 1 0 0 0 0
...............................................................................................................................CGATTCCCTTACCTGCT................ 17 2 11 0.09 1 0 0 0 0 1 0
.....GACCTAGAGGATCCCCGGA........................................................................................................................................ 19 3 12 0.08 1 0 0 1 0 0 0
............................................................AAAGCATCCTGAAGG..................................................................................... 15 1 18 0.06 1 1 0 0 0 0 0
....................................................................CTGAAGGCCGCAGGTT............................................................................ 16 2 20 0.05 1 0 0 0 0 0 1

Anti-sense strand reads

CCGTCCTAGACCTCCAAGGGGCCTGTCACCTGGTCGGTGTCTAGGTTTACCATACAAATTTTTCGTAGGACTTCAGGCGTCTAAACTGTACAAAAGGAAGAGAGAACGTCCAAGGCACCCGAAGTTCGCTAAGGAAATGCACGAGAAGAAGAAACACAAC
**************************************************..........(((((((....(((((....)))))...)))))))...............************************************************** 		Read size # Mismatch Hit Count Total Norm Total O001
Testis
 SRR618934
dsim w501 ovaries
 M023
head
 M053
female body
 SRR553488
RT_0-2 hours eggs
 M024
male body		 SRR553487
NRT_0-2 hours eggs
 SRR902008
ovaries
 SRR553485
Chicharo_3 day-old ovaries
...................................................................................................................CACCCGAAGTTCGCTAAG........................... 18 0 1 2.00 2 2 0 0 0 0 0 0 0 0
....................................................................................................................................GGGAATGGACGAGAAGAA.......... 18 2 4 0.25 1 0 0 0 1 0 0 0 0 0
.........ACCTCCAAGGGGGCTCTAA.................................................................................................................................... 19 3 13 0.23 3 0 0 3 0 0 0 0 0 0
.....................................................ACAATTTTTTCGTAGG........................................................................................... 16 1 5 0.20 1 0 1 0 0 0 0 0 0 0
.......ATACCTCCAAGGGGGCTCT...................................................................................................................................... 19 3 5 0.20 1 0 0 0 0 0 1 0 0 0
.........ACCTCCAAGGTGCCTCT...................................................................................................................................... 17 2 8 0.13 1 0 0 0 0 0 0 1 0 0
.........ACCTCCAAGGTGCCT........................................................................................................................................ 15 1 8 0.13 1 0 1 0 0 0 0 0 0 0
.........................................................................CAGGCGTCGAAACAGTAC..................................................................... 18 2 8 0.13 1 0 0 0 0 1 0 0 0 0
.........ACCTCCAAGGTGCCTCTAA.................................................................................................................................... 19 3 19 0.11 2 0 0 2 0 0 0 0 0 0
......................................................................................................................................AAATGCGCGGGAAGAAGAAC...... 20 3 10 0.10 1 0 0 0 0 0 0 0 1 0
.........ACCTCCAAGGTGGCTCTCA.................................................................................................................................... 19 3 11 0.09 1 0 1 0 0 0 0 0 0 0
.............................CTGGTCGATGTCTAG.................................................................................................................... 15 1 11 0.09 1 0 0 0 0 1 0 0 0 0
.........ACCTCCAAGGTGGCTGT...................................................................................................................................... 17 2 14 0.07 1 0 1 0 0 0 0 0 0 0
...............................................................................................GAACGAGAGAACGTCCA................................................ 17 2 18 0.06 1 0 1 0 0 0 0 0 0 0
.......................................................AAATTTTTCGTATGGCTT....................................................................................... 18 2 20 0.05 1 0 0 0 0 0 0 0 0 1

Generated: 04/24/2015 at 10:46 AM