ID:

dsi_4983

Coordinate:

3l:8263676-8263825 +

Confidence:

Candidate

Type:

Unknown

[View on UCSC Genome Browser {Cornell Mirror}]

Legend:

mature

star

mismatch in read

Predicted structure

-40.2	-40.0	-40.0

Flybase annnotation

intergenic

Repeatable elements

Name	Class	Family	Strand
TART_DV	LINE	Jockey	+

Sense Strand Reads

GCGCTGAACGCGTCCGTCGACCGCAAGGAGGCCATCGAGAAGATGGAGTCGTGCGACAGCGATCCGGAGATGCTTAAAAAACTGGCAACCATTAAGCAGGAAGTATCTCCGCAGCAGCAACAGCACATGCAACAGCAATCACAGCAGCAGATGCAGCAGCAACTCGCGCCTGTTGGCATACCGCAACCTCCGTCTTGCCCGCCTTCGGAATCAGTCTATATCAAAAAGGAGCCCATGGAGGACTCGATGG ************************************************((((....((....(((((((((((.......(((...))).........))))))))))).....))....)))).(((....)))...((((..((((.(((....))).)).))..)))).((((...((.......))...)))).************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR553486 Makindu_3 day-old ovaries	M025 embryo	GSM343915 embryo	SRR618934 dsim w501 ovaries	M024 male body	M023 head	SRR553485 Chicharo_3 day-old ovaries	M053 female body	SRR553488 RT_0-2 hours eggs
..........................................................................................................................................................................................................CTTCGGTATCAGTATATATCA...........................	21	2	1	3.00	3	3	0	0	0	0	0	0	0	0
....................................................GCGACAGCGATCCGGAGATGCTTAAA............................................................................................................................................................................	26	0	1	3.00	3	0	3	0	0	0	0	0	0	0
....................................................GCGACAGCGATCCGGAGATGCTTAAAAA..........................................................................................................................................................................	28	0	1	1.00	1	0	1	0	0	0	0	0	0	0
..................................................GTGCGACAGCGATCCGGAGAT...................................................................................................................................................................................	21	0	1	1.00	1	0	0	1	0	0	0	0	0	0
.....GAACGCGTCCGTCGACCGCAAGGA.............................................................................................................................................................................................................................	24	0	1	1.00	1	0	0	1	0	0	0	0	0	0
....................................................GCGACAGCGATCCGGAGA....................................................................................................................................................................................	18	0	1	1.00	1	0	0	0	0	0	1	0	0	0
.....................................................CGACAGCGATCCGGAGATGCT................................................................................................................................................................................	21	0	1	1.00	1	0	0	0	0	0	0	0	1	0
..............................GCCATCGAGAAGATGGAGTCGTGC....................................................................................................................................................................................................	24	0	1	1.00	1	0	0	0	0	1	0	0	0	0
......................................................GACAGCGATCCGGAGATA..................................................................................................................................................................................	18	1	1	1.00	1	1	0	0	0	0	0	0	0	0
..........................................................................TAAAAAACTGGCAACC................................................................................................................................................................	16	0	1	1.00	1	0	0	0	0	0	0	1	0	0
............................................................................................................................................................................................................TCGGTATCAGTATATATCAGA.........................	21	3	1	1.00	1	1	0	0	0	0	0	0	0	0
..............CGTTAACCGCAAGGAGGC..........................................................................................................................................................................................................................	18	2	2	0.50	1	0	0	0	0	0	0	0	0	1
...............................................GTCGTGAGACAGGGATCCG........................................................................................................................................................................................	19	2	2	0.50	1	0	0	0	1	0	0	0	0	0
...................................................................................................................................................CTGATGACGCAGCAACTCGC...................................................................................	20	3	11	0.36	4	0	0	0	0	3	1	0	0	0
........................................TGATGGAGTCGTGAGACAG...............................................................................................................................................................................................	19	2	3	0.33	1	0	0	0	1	0	0	0	0	0
......................................CAATATGGAGTCGTGCGA..................................................................................................................................................................................................	18	2	4	0.25	1	1	0	0	0	0	0	0	0	0
...........................................TGGAGTCGTGAGACA................................................................................................................................................................................................	15	1	4	0.25	1	0	0	0	1	0	0	0	0	0
.........................AGGAGGCCATCGAGAA.................................................................................................................................................................................................................	16	0	4	0.25	1	0	0	0	1	0	0	0	0	0
.......................................AAGATGCTGTCGTGAGACAG...............................................................................................................................................................................................	20	3	5	0.20	1	0	0	0	1	0	0	0	0	0
..............CGCTGACCGCAAGGAGGC..........................................................................................................................................................................................................................	18	2	12	0.08	1	0	0	0	0	0	0	0	0	1
................................................................................................................................................................................................................................CTAGGAGCCCATGAAGGAC.......	19	3	20	0.05	1	0	0	0	0	1	0	0	0	0
.....GATCGGGTCCGTCGAC.....................................................................................................................................................................................................................................	16	2	20	0.05	1	0	0	0	0	0	0	0	0	1
................................................................................................................................................................................................TCTTGACCGACTTCGGA.........................................	17	2	20	0.05	1	0	0	0	0	0	0	1	0	0

Anti-sense strand reads

CGCGACTTGCGCAGGCAGCTGGCGTTCCTCCGGTAGCTCTTCTACCTCAGCACGCTGTCGCTAGGCCTCTACGAATTTTTTGACCGTTGGTAATTCGTCCTTCATAGAGGCGTCGTCGTTGTCGTGTACGTTGTCGTTAGTGTCGTCGTCTACGTCGTCGTTGAGCGCGGACAACCGTATGGCGTTGGAGGCAGAACGGGCGGAAGCCTTAGTCAGATATAGTTTTTCCTCGGGTACCTCCTGAGCTACC ************************************************((((....((....(((((((((((.......(((...))).........))))))))))).....))....)))).(((....)))...((((..((((.(((....))).)).))..)))).((((...((.......))...)))).************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR553486 Makindu_3 day-old ovaries	M024 male body	M023 head	SRR902009 testis	SRR618934 dsim w501 ovaries	SRR553488 RT_0-2 hours eggs
..........................................................................................................................................................................................................GAAGCCATAGTCATATATAGT...........................	21	2	1	8.00	8	8	0	0	0	0	0
........................................................................................................................................................................................................AGGAAGCCATAGTCATATATA.............................	21	3	1	8.00	8	8	0	0	0	0	0
...........................................................................................................................................................................................................AAGCCATAGTCATATATAGTC..........................	21	3	1	5.00	5	5	0	0	0	0	0
.........................................................................................................................................................................................................GGAAGCCATAGTCATATATA.............................	20	2	1	3.00	3	3	0	0	0	0	0
........................................................................................................................................................................................................TGGAAGCCATAGTCATATATA.............................	21	3	1	1.00	1	1	0	0	0	0	0
..........................................................................................................................................................................................................GAAGCCATAGTCATATATAGTC..........................	22	3	1	1.00	1	1	0	0	0	0	0
.................................TAGCGCTTCTACCTCATCA......................................................................................................................................................................................................	19	2	2	0.50	1	0	1	0	0	0	0
................................GTAGCGCTTCTACCTCATC.......................................................................................................................................................................................................	19	2	2	0.50	1	0	0	1	0	0	0
.................................................................................................................................................................................TATTGCGTCGGAGCCAGAACGG...................................................	22	3	2	0.50	1	0	0	0	1	0	0
.................................TAGCGCTTCTACCTCATC.......................................................................................................................................................................................................	18	2	5	0.20	1	0	1	0	0	0	0
.........................................................................................................AGGGGCGTCATCGTTGTCG..............................................................................................................................	19	2	11	0.18	2	0	0	0	0	2	0
..........................................................................................................................................................................................................GAAGCCATAGTCATATATATT...........................	21	3	7	0.14	1	1	0	0	0	0	0
.....................................................................................................................................................................................................................................TCGCGTACCTCCAGAGC....	17	2	11	0.09	1	0	0	0	0	1	0
....................................................................................................................................................................................GGCGTTGGAGGCCGTAC.....................................................	17	2	15	0.07	1	0	0	0	0	0	1
...................................................................................................................................................................................TGGCGTTGTACGCAGAA......................................................	17	2	18	0.06	1	0	0	0	0	1	0

Generated: 04/24/2015 at 10:47 AM