ID:

dsi_4943

 Coordinate:

x:7365426-7365736 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-3.3 -2.9 -2.8

Flybase annnotation

five_prime_UTR [x_7365153_7365596_-]; exon [x_7365071_7365596_-]

No Repeatable elements found

Sense Strand Reads

----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------#############################################################################################################################################################################################################################
TTTTCGTTTTTAAAACAACCCCGAAGATTGCAATATTTTGAGCTTGAGAGGTGAGTGGCGTCTGCTATTTGTTGTTGTTGCTCGGGTAGAGGGATTCCTTCGGATGAAATAATAGGGATGCGGATGCTGGCCATGCGCAGAGGATGCCCTGACCTACATTCCCGCTTATTGGCCATCCGAGCAGCAGTTGCAAAAGGATAAATACACACGCAACACGAGCTGGTTAATAAGCGCTTTTCCGATTTTCCAATTGTCCGACATTCCTATCCCTCCAGCCTCCATCCGCGCGCTGAAAAGTGTGCAAAGAAATCAACAAAAAAGAGAAGAAAAAAAAAGTAAATATACATATATAATCGAAAAGGACACTCTGGAAAAGCAGATACTTGAGTGCAATATGTCCAGCAATATATT
************************************************************************************************************************************************************************************************************..........((((..(((..(((...((......)))))..))).))))....********************************************************************************************************************************************************* 		Read size # Mismatch Hit Count Total Norm Total M023
head
 SRR618934
dsim w501 ovaries
 SRR553487
NRT_0-2 hours eggs
 SRR902009
testis
 M024
male body		 SRR553486
Makindu_3 day-old ovaries
 SRR553485
Chicharo_3 day-old ovaries
 SRR553488
RT_0-2 hours eggs
...................................TTTTGAGCTTGACAGGT....................................................................................................................................................................................................................................................................................................................................................................... 17 1 1 1.00 1 0 1 0 0 0 0 0 0
...........................TTGCAATATTTTGAGCTTGAGAGGTG...................................................................................................................................................................................................................................................................................................................................................................... 26 0 1 1.00 1 0 0 1 0 0 0 0 0
................................................................................................................................................................................................................................................GATTTTCCAATTGTCCGA......................................................................................................................................................... 18 0 1 1.00 1 1 0 0 0 0 0 0 0
............................................................................................................................................................................................................CACACGCAACACGAGCTG............................................................................................................................................................................................. 18 0 1 1.00 1 1 0 0 0 0 0 0 0
........................................................................................................................................................................................................................................................................................................................TCAAAGAAGAGAAGAAAAAAA.............................................................................. 21 2 2 0.50 1 0 1 0 0 0 0 0 0
................................GTATGTTGGGCTTGAGAGGT....................................................................................................................................................................................................................................................................................................................................................................... 20 3 4 0.25 1 0 0 0 0 1 0 0 0
........................................................................................................................................................................................................................................................................................................................ACAAAAAAGATAAGAAAAAA............................................................................... 20 1 4 0.25 1 0 0 0 1 0 0 0 0
...............................................................................................................................................................................................................................................................................................................................AGAGAAGAAAAAAAAAGAAAA....................................................................... 21 1 5 0.20 1 0 0 0 1 0 0 0 0
..........................................................................................................................................................................................................................................................................................................................AAAAAAGGGAAGAAAAAAAA............................................................................. 20 1 7 0.14 1 0 1 0 0 0 0 0 0
...........................................................................................................AATAATAGGGATGGGGT............................................................................................................................................................................................................................................................................................... 17 2 9 0.11 1 0 0 0 0 0 1 0 0
.............................................................................TTCCTCGGGTAGAGCG.............................................................................................................................................................................................................................................................................................................................. 16 2 20 0.10 2 0 0 2 0 0 0 0 0
.TTTCGTTTTTAAAAAAA......................................................................................................................................................................................................................................................................................................................................................................................................... 17 1 20 0.10 2 0 0 2 0 0 0 0 0
...........................................................................................................................................................................................................................................................................................................................AAAAAGGGAAGAAAAAAAA............................................................................. 19 1 11 0.09 1 0 1 0 0 0 0 0 0
....................................................................................................................................................................................GCAGGAGTCGCATAAGGATA................................................................................................................................................................................................................... 20 3 12 0.08 1 0 1 0 0 0 0 0 0
..................................................................................................................................................................................................................................................................................................TGAAACGTGTTCAAAGAAA...................................................................................................... 19 2 18 0.06 1 0 0 0 0 0 0 1 0
......................................................................................................................................................................................................................................................................................................................................................................AAGGACTCTGTGGAAAAGGA................................. 20 3 19 0.05 1 0 0 0 1 0 0 0 0
...................................................................................................TTGGATGTGATAATAGGGA..................................................................................................................................................................................................................................................................................................... 19 3 19 0.05 1 0 0 1 0 0 0 0 0
...........................................................................TTTTCCTCGGGTAGAG................................................................................................................................................................................................................................................................................................................................ 16 2 20 0.05 1 0 0 0 0 0 0 0 1
..............................................................................................................................................................................................................................................................................................................................AAGGGAAGAAAAAAAA............................................................................. 16 1 20 0.05 1 0 1 0 0 0 0 0 0
..................................................................................................TTCGGATGAAATTAT.......................................................................................................................................................................................................................................................................................................... 15 1 20 0.05 1 0 0 0 0 0 1 0 0

Anti-sense strand reads

AAAAGCAAAAATTTTGTTGGGGCTTCTAACGTTATAAAACTCGAACTCTCCACTCACCGCAGACGATAAACAACAACAACGAGCCCATCTCCCTAAGGAAGCCTACTTTATTATCCCTACGCCTACGACCGGTACGCGTCTCCTACGGGACTGGATGTAAGGGCGAATAACCGGTAGGCTCGTCGTCAACGTTTTCCTATTTATGTGTGCGTTGTGCTCGACCAATTATTCGCGAAAAGGCTAAAAGGTTAACAGGCTGTAAGGATAGGGAGGTCGGAGGTAGGCGCGCGACTTTTCACACGTTTCTTTAGTTGTTTTTTCTCTTCTTTTTTTTTCATTTATATGTATATATTAGCTTTTCCTGTGAGACCTTTTCGTCTATGAACTCACGTTATACAGGTCGTTATATAA
*********************************************************************************************************************************************************..........((((..(((..(((...((......)))))..))).))))....************************************************************************************************************************************************************************************************************ 		Read size # Mismatch Hit Count Total Norm Total M023
head
 SRR553488
RT_0-2 hours eggs
 SRR553486
Makindu_3 day-old ovaries
 SRR618934
dsim w501 ovaries
 SRR553487
NRT_0-2 hours eggs
 M053
female body
 M025
embryo
 SRR902008
ovaries
 M024
male body
.............................................................................................................................................CCTCCGGGACTCGATGTAGGGG........................................................................................................................................................................................................................................................ 22 3 1 4.00 4 4 0 0 0 0 0 0 0 0
..................................................................................................................................................................GCGAATAATCGGTACGCTCTTC................................................................................................................................................................................................................................... 22 3 1 2.00 2 0 2 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................................................................................GGCGCGCGCCTTTATACACGTT........................................................................................................... 22 3 1 2.00 2 0 0 2 0 0 0 0 0 0
.............TTGTTGGGGCTTCTAACGTTATAAAA.................................................................................................................................................................................................................................................................................................................................................................................... 26 0 1 1.00 1 0 0 0 0 0 1 0 0 0
.................TGGGGCTTCTAACGTTATAAA..................................................................................................................................................................................................................................................................................................................................................................................... 21 0 1 1.00 1 0 0 0 0 1 0 0 0 0
...............................................................................................................................................TCCGGGACTCGATGTAGGGG........................................................................................................................................................................................................................................................ 20 3 4 0.50 2 0 0 0 0 0 0 2 0 0
.AAATGGAAAATTTTGTTGGGG..................................................................................................................................................................................................................................................................................................................................................................................................... 21 3 4 0.50 2 0 0 0 2 0 0 0 0 0
.............TTGTTGGGGCATCTA............................................................................................................................................................................................................................................................................................................................................................................................... 15 1 4 0.50 2 0 2 0 0 0 0 0 0 0
...............................................................................................................................................TACGCGACTCGATGTAGGGG........................................................................................................................................................................................................................................................ 20 3 6 0.50 3 0 0 0 0 0 0 0 3 0
................................................................................................................................................................................................................................................................................................................TCTTTAGTTGTTTTATCT......................................................................................... 18 1 4 0.25 1 0 0 0 0 0 0 0 0 1
.................................................................................................................................................CGGGACTCGATGTAGGGG........................................................................................................................................................................................................................................................ 18 2 5 0.20 1 0 0 0 1 0 0 0 0 0
....................................................................................................................................................................................................................................................................AAGGATACGGATGTCGTAGGT.................................................................................................................................. 21 3 5 0.20 1 0 0 0 1 0 0 0 0 0
.........................................CGAACTCTCCACACA................................................................................................................................................................................................................................................................................................................................................................... 15 1 5 0.20 1 0 0 1 0 0 0 0 0 0
................................................................................................................................................................................................................................................................................GTCGGAGGTAGGCGA............................................................................................................................ 15 1 13 0.15 2 0 0 2 0 0 0 0 0 0
..............................................................................................................................................................................................................GAGCGTTGTGCTCGAC............................................................................................................................................................................................. 16 1 7 0.14 1 0 0 0 1 0 0 0 0 0
......................................................................................................................................................CTGGATGTGAGGGCGCAGA.................................................................................................................................................................................................................................................. 19 3 7 0.14 1 0 1 0 0 0 0 0 0 0
............................................................................................................................AGGACCGGTACGCATCT.............................................................................................................................................................................................................................................................................. 17 2 9 0.11 1 0 0 0 0 1 0 0 0 0
..............................................................................................................................................CTCCGGGGTTGGATGTAA........................................................................................................................................................................................................................................................... 18 3 20 0.10 2 2 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................................................................AGGATACGGATGTCGTAGGT.................................................................................................................................. 20 3 11 0.09 1 0 0 0 1 0 0 0 0 0
........................................................................................................................................................................................................TCATGTGTGCCTTGTGCT................................................................................................................................................................................................. 18 2 13 0.08 1 0 0 1 0 0 0 0 0 0
................................................................................................................................................ATGGGACTCGATGTAGGGG........................................................................................................................................................................................................................................................ 19 3 13 0.08 1 0 0 0 0 1 0 0 0 0
......................................................................................................................................................CTCGATGTAGGGGCGAGTA.................................................................................................................................................................................................................................................. 19 3 17 0.06 1 0 0 0 1 0 0 0 0 0
................................................................................................................................................CCGGGACTCGATGTAGGGG........................................................................................................................................................................................................................................................ 19 3 17 0.06 1 0 0 0 0 0 0 1 0 0
...................................................................................................................................................GGACTGGATATAGGGG........................................................................................................................................................................................................................................................ 16 2 20 0.05 1 0 0 0 1 0 0 0 0 0
......................................................................................................................................................................................................................................................................................................TTGACACGTGTCTTTAG.................................................................................................... 17 2 20 0.05 1 0 0 0 1 0 0 0 0 0
...............................................................................................................................ACCGGTACGAGTATCCT........................................................................................................................................................................................................................................................................... 17 2 20 0.05 1 0 0 0 0 1 0 0 0 0
...................................................................................................AGCGAACTTTATTATCC....................................................................................................................................................................................................................................................................................................... 17 2 20 0.05 1 0 0 1 0 0 0 0 0 0
....................................................................................................................................................GACTCGATGTAAGGG........................................................................................................................................................................................................................................................ 15 1 20 0.05 1 0 1 0 0 0 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 x:7365376-7365786 - dsi_4943 TTTTCG------T--T-T--T----TAA-AACAA---CCC----------CGAAGATTGCAATATTTT--GAGC-TTGAGAGGTGAGTGGCGTCTGCTATTTGTTGT-T------GTTGCTCGGGTAGAGGGAT----------------------------------------------------------TCCT-----T-------CGGATGAAATAATAGGGATGCGGATGCTGGCCATGCGCAGAGGATGCCCTGACCTACATTCCCG--CTTATTGGCCATCCGA-----------------------------------GCAGCAGTTGCAAAA--GGATAAATACACACGCAACACGAGCTGGTTAATAAGCG--CTTT----------------TCCGATTTTCCAATTGTCCGAC---ATTCC---------T--ATCCCTCC-AG--C--------------------------------------------------C--------------TCCATCCGCGCG-CTGAAAAGT-GTGCAAAGAAATCAACAA-AAAAGAG-----------------------------AAGAAAA-----------------AAAAAGTAAATATACATATAT---AATCGAA-AAGGA-CAC-----TCTGGA-------AA------------------------------------------AGCAGATACTT---------GAGTGCAATATGTCC-AGCAATAT--------ATT
droSec2 scaffold_50:88535-88798 - TTTTTG------T--T-T--T----TAA-AACAA---CCC----------CGAAGATTGCAATATTTT--GAGC-TTGAGAGGTGAGTGGCGTCTGCTATTTGTTGT-T------GTTGCTCGGGTAGAGGGAT----------------------------------------------------------TCCT-----T-------GGGATGAAATAATAGGGATGCGGATGCTGGCCATGCGCAGAGGATGCCCTGACCTACATTCCCG--CTTATTGGCCATCCGA-----------------------------------GCAGCAGTTGCAAAA--GGATAAATACACACGCAACACGAGCTGGTTAATAAGCG--CTTT----------------TCCGATTTTCCAATTGTCCGAC---ATTCC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
dm3 chrX:7801595-7802004 - TTTTTC------T--T-T--T----TAA-AACAA---TCT----------TGAAGATTGCATTATTTT--GAGC-TTGAGAGGTGAGTGGCGTCTGCTATTTGTTGT-T------GTTGCTCGGGTAGAGGGAT----------------------------------------------------------TCCT-----T-------CGGATGAAATAATAGGGATGCGGATGCTGGCCATGCGCAGAGCATGCCCTGACCTACATTCCCG--TTTATTGGCCATCCGA-----------------------------------GCAGCAGTTGCAAAA--GGATAAATACACACGCAACACGAGCTGGTTAATAAGCG--CTTT----------------TCCGATTTTCCAATTGTCCGAC---ATTCC---------T--ATCCCTCC-AG--C--------------------------------------------------C--------------TCCATCCGCGCG-CTGAAAAGT-GTGCAAAGAAATCAACAA-AAAAGAG--------------------------AAAAAGAAA---------------------AAGTAAATATACATATAT---AATCGAA-AAGGA-CAC-----TCTGAA-------AA------------------------------------------AGAAGATACTT---------GAGTGCAATATGTCC-AGCAATAT--------TTT
droEre2 scaffold_4690:16713112-16713526 - TTAT-----------T-T--T----GAA-AACAA---TCG----------CGAACACTGCAATATTTT--GAGC-TTAAGAGGTGAGTGGCGTCTGCTATTTGTTGT-T------GGGGCTCGGGCAGAGGGATTC--------------------------------------------------------TCAT-----T-------CGGCTATAATAAAAGGGATGCGGATGCTGGCCATGCGCAGAGCATGTCCTGACCTACATTCCCG--CTTATTGGCCATCCAA-----------------------------------GCAGCAGTTGCAAAA--GAATAAATACACACGCAACACGGGCTGGTTAATAAACG--CTTT----------------TCCGATTTTCCAATTGTCGGAC---ATTCC---------C--TACCCTCC-AG--C--------------------------------------------------C--------------GCCATCCGAGCG-CTGAAAAGT-GTGAAAAGAAATCAACAA-A--------------------AATAACTA--AAAAAAAGAAA-------------------AGAAGTAAATATACATATAT---AATCGAA-AAGGA-CCC-----TCTGGA-------A-------------------------------------------AGCAGATACTTG--------GAGTGCAATATGTCC-AGCCATAT--------ATT
droYak3 X:13511488-13511917 + TTAC--------A--T-T--T----AAA-AACAA---TCC----------CGAACATTGAAATATTTT--GAGC-TTTAGAGGTGAGTGGCGTCTGCTATTTGTTGT-TTGGCATGGAGTTCGGGTAGAGGGTT----------------------------------------------------------TCCT-----T-------CGGATGGAATAATAGGGATGCGGATGCTGGCCATGCGCAGAGCATGCCCTGACCTACATTCCCG--CTTATTGGCCATCCAA-----------------------------------GCAGCAGTTGCAAAA--GGATAAATACACACGCAACACGAGCTGGTTAATAAGCG--CTTTTCTGATTTACTGATTTTCCGATTTTCCAATTGTCCGAC---ATTCC---------CCAATCCCTCC-AG--C--------------------------------------------------CC-------------TCCATCCGCGCG-CTGAATAGT-GTGCAAAGAAATCAACACGAAAAGTG----------AGAATATAT--AT--------------------------------------------CATCCATAGGAATCGAA-AAGGATCTC-----GCTGGA-------AATC-----------------------------------------GCAAATACTC---------GAGTGCAATATGTCC-AGCAATTT--------AAT
droEug1 scf7180000409830:52333-52711 - ATTTCT------T--T-TTGT----T-AG-AAAA---CAC----------CGCACTTTGTAATTGATT--GCGC-TTAAGAGGTGAGTGGTGTCTCTTATTTATTT--T------GGGGCTCGGGAAAGGGGGT-T-----TCG------------------------------------TTT-----CGGTTTCT-----A-------CTGACAGGATAATAGGGATGCGGATGCTGGCCATGCGCAGAGCATGCCCTGACCTACATTCCCG--CTTATTGGCTATCCAA-----------------------------------GCAGCAGTTGCAAAA--GGATAAATACACACGCAACACGAGCTGGTTAATAAACG--CTTT----------------TCCGATTTTCCAATT--CCGTC---TTTCC---------T--TCCCCTCC-AG----------------------------------------------------------------------------CGCG-CTGCAAAAGTGT-CAAACAAAAATACACG-----------------------------------------------------------------------------------------TA-AATTA-CTC-----TTGGGA-------C-------------------------------------------TCCTGACTCCTGAAGATGTTAAATACGCTATGTTA-AATAATAT--------ATT
droBia1 scf7180000301774:15484-15865 + GTAT-----------TTTTAG----G-AG-GAAA---ACA----------AGGACTTCTTTATTGTTT--GAGC-TGAGGTGGTGAGTG-CGTTTCCTATTTATTT--C------GGGGCTCGGGAC-CGGACT-------TCG------------------------------------TTT-----CGGCTCGTCCTCGT-------C--------GTCTAGGGATGTGGATGCTGGCCATGCGCAGAGCCTGCCCTGACCTACATTCCCG--CTTATTGGCCATCCAA-----------------------------------GCAGCAGTTGCAAAA--GGATAAATACACACGCAACACGAGCTGGTTAATAAACG--CTTT----------------TCCGATTTTCCAATTTTCCGAC---ACAC-------TCCT--C--------AGCCCCCG----------------------------------------------CCCCC----CGCAGCCAACAGCCGCGCG-CTGCAAAGT-GT-CAAAGAAGAATACTCG-----------------------------------------------------------------------------------------AGCTAGGA-CTC-----GTTGGC-------A-------------------------------------------TCCAGATCCTT---------GAGTGCAATATGCCC-AGT---CT--------ACG
droTak1 scf7180000415262:114395-114758 - TTTTG---------------G----C-AG-GAAA---AAT----------AGATATTTGTAATTGTTT--GAGC-CTAAGAGGTGAGTCTCGTCTCCTATTTATTT--C------GGGGTTCGGTTCGTT----------------------------------------------------------CGGTTTTT-----ACGAACTACGGATAGGATAATAGGGATGCGGATGCTGGCCATGCGCAGAGCATCTCCTGACCTACATTCCCG--CTTATTGGTCATCCAA-----------------------------------GCAGCAGTTGCAAAA--GGATAAATACACACGCAACACGAGCTGGTTAATAAACG--CTTT----------------TCCGATTTTCCAATTTTCCGAC---TTTTCGACTC-T--------CCT-C-TGCCCCCGCAGCAGCAACAA----CA-------------------------------------------------------------------------AC-AAGATATTCG-----------------------------CAA-A-------------------------------------------------------AA-AAGGA-CCC-----TCTGGC-------A-------------------------------------------TTCAGATCCTT---------GAGTGCAATATGTCC-AAT---TT--------ATT
droEle1 scf7180000491044:650732-651131 + CTTGCA------T--T-T--TCTACT-ACAAAAA---ACT----------CTTTCATTGTAATTGTTT--GAGA-TTGAGAGGTGAGTCGC-----CTTTTTAATTT-T------GGTGTTCGGGAG-GGGACT-T-----TCG------------------------------------TTTGGACTCGGTTCCT-----A-------CGGATGGGATAATAGGGATGCGGATGCTGGCCATGCGCAGAGCATGTCCTGACCTACATTCTCG--CTTATTGGCCATCCAA-----------------------------------GCAGCAGTTGCAAAA--AGATAAATACACACGCAACACGAGCTGGTTAATAAACG--CTTT----------------TCCGATTTTCCAACTATCCGACGTCTTTTG---------T--TTCCCCCC-AG--C--------------------------------------------------C--------------A-----CACGCG-CTGAATAGT-TGGCAAACAAAAATATCCG-----------------------------------------------------------------------------------------AGCAAGGA-CTC-----CCTGGG-------AAATGTGAAT-----TCAGCTCCGGATA----AC---------------ATTCTC---------AAGTGCAATATGTCG-AAT---AT--------ATT
droRho1 scf7180000779479:17183-17579 + TTGCCA------TATT---TT----A-A-GAAGA---ACT----------CGTACTTTGTAATTGTTT--GAGC-TTGAGAGGTGAGT-----CTCCTATTTATTTT-T-------GCGTTTGGGAG-GGGGCT-TTCGTTTCG------------------------------------TTTAGATTCGGCTCCT-----A-------CGGATAGGATAATAGGGATGCGGATGCTGGCCATGCGCAGAGCATGTCCTGACCTACATTCTCG--CTTATTGGCCATCCAA-----------------------------------GCAGCAGTTGCAAAA--AGATAAATACACACGCAACACGAGCTGATTAATAAACG--CTTT----------------TCCGATTTTCCAATTTTGCGAC---TTTT-------------TTCCCCCC-AG--C--------------------------------------------------C--------------A-----CATGCG-CTGAAAAGT-TGACAAACAAAAATATTCG-----------------------------------------------------------------------------------------CAAAAGGA-CTG-----TCTGGG-------AAATGTAAAAC----CCAGATCCGGATA----AC---------------GTCCTC---------AAGTGCAATATGTCC-AAT---AT--------ATT
droFic1 scf7180000454045:1264812-1265187 - TTTTG--------------------G-AG-TAAG---CTG----------CG----------TAGTTT--GTAT-TTAAGAGGTGAGT-----CAGCTATTTATTTT-T------TACTTTCGG-------------------------------------------------------------------CTCCT-----T-------CGGTAAGGATAAAAGGGATGCGGATGCTGGCCATGCGCAGAGAAAGTCCTGACCTACATTCTCG--CTTATTGGCCATCCAATGGGGCAGCCAGGGCCAA-----------------GCAGCAGTTGCAAAA--AGATAAATACACACGCAACACGAGCTGGTTAATAAACG--CTTT----------------TCCGATTTTCCAATTTTCCGAC---TTTTC---------------CCTCTTAG--C--------------------------------------------------T---------------CC-CCCGAACG-CTGAAAAAG-GGGCAAACAAAAATATTCG-----------------------------------------------------------------------------------------CA-AAGGA-CTCGACTGTTTGCG-------AAATGTGAAT-----CCAGCTACGGAT---TTAC---------------GTTCTT---------ATGTGCAATATGTCC-ATT---AT--------ATT
droKik1 scf7180000302696:1665410-1665881 - CTTTAA------T--T-A--T----TAA-AAGAAGAGTCCCTGGATTAGGGAAGGATTGCGGGTTTCTCAACGC-ATAAGAGGTAAGTT-TGTTTGCTGTTTATTT--T------GGGCTTC---------------------A------------------------------------TGG-----CGGAGCTTGGAGAA-------TGGCCAGGATAACAGGGATAGGGATGCTGGCCATGCGCAGTGTATGCCCTGACCTACATTCGCG--CTTATTGGCCATCCAATGGGGCAGCCAGGGCCAGCAGCAGCCGCAGCAGCAGCAGCAGTTGCAAAA--AGATAAATACACACGCAACACGAGCTGGTTAATAAAAGTGCTTT----------------CC---TTCT---------CGCC---TTTC----------------TCTCC-----------------------------------------------------------------------------------TCAAAAA--------------------------AGAAAAAAAAAGAAAGAAAATAA--ATAG-AAAAGGAAAGCTGAAGCTGTAAAGCGGACA---------------------AATCGAA-AAGAA-AACA----TCTGGGAAAATGGAAATGTGAGT-----C-----CCGGGCAGCTTACCTTCTGTGTGTCGTGTGTC-------------CAGCAGTATGCCC-AAT---ATCCTCTCCAGTT
droAna3 scaffold_13117:784769-785184 - GTTTTCTGGACAGTTT---TT----G-AG-GATA---TAA----------CG----------CATTTT--GTGTCGCAATTAGTAAGTGTCGGCCGTGGTTTATGGCC----------------------------------CATTGCGTGGTGCGAAAAGTGGGAGTTGTGGGTGGCTAGGT-----C-------G------------GGGACTGGTGTCT-GGTAGCTGGATGCTGGCCATGCGCAGAGAATGCCCTGACCTACATTCTCG--CTTATTGGCCGTCCAATGGGGCAGCCTGGGCCAGGA---------------GCAGCAGTTGCAAAATAATATAAATACACACGCAACACGAGCCAGTTAATAAAAG--CATC----------------TCGTCCTTTCC----------------------------CCA-------TTT--TCT------------------------------------------------------------------------CTCGTCTGAAAAA--------AT------------------AAAGAAATAGA---GGCGATTGCAG-AAAAAGAAAA-----------------ACA-ATTGGAGGCA------------------AA------CAACTGGCTGC--------AAATGTGATTGCCAG--------GGAA-----------------AACAGAG--------------CTTACAATATGTCC-AGA---AA--------GTG
droBip1 scf7180000396412:696865-697271 - AAAT-----------T---TT----A-AG-GATC---TGG----------CGAG--------GATTTT--GTGT-CCAATTAGTAAGTGTTTGCCGTGGTTTATGGCC----------------------------------CATTGAGTGGTGCGAAAAGTGTCAGTCGTGGGTGGAT------------------------------GGGACGGGAGGCTGGGGAC-TGGATGCTGGCCATGCGCAGAGAATGCCCTGACCTACATTCTTG--CTTATTGGCCATCCAATGGGGCAGCCTGGGCCAGGA---------------GCAGCAGTTGCAAAATAATATAAATACACACGCAACACGAGCTAGTTAATAAAAG--CATC----------------TCG-----------------TC---CTTTT---TCCC--CCA-------TTT--TCT------------------------------------------------------------------------CGTGTCTGAAA-----------CAAAAAAT-----------AAAGA-ACAGA---GACGATTACAG-AAAAAGAAAA-----------------ACAAATTAGAGACA------------------AA------CAACTGGTTGG--------AAATGTGATTGGTAG-----------------------------CGAAAAACCGA---------GCTTACAATATGTCC-AGT---A---------AGT
dp5 XL_group1e:401283-401523 + -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGCGGATGCTGTCCATGCGCAGAGCCTGCCCTGACCTACATTCGAA--TTTATTGGTCATCTAA---GGCAGCCACAGCCAA------------------AGGCATTTACAAAA--AAATAAATACACACGCAACGCGAGAAGGTTAATAATCG--TTTA----------------CTA----------------GCC-------------------------G-T-TGTTTTTGTAAAAAAAATAATTTTCAAAAACTTAAATGCACAAAAAAACAGCCAACACTGACGT--------------------------------------------------------------------------------------------------------------------AAAACT------------------AA------CA---------------------------------------------------------------------TCT---------G-CTGCATTATGCCTTAAC---TT--------AAT
droPer2 scaffold_30:818757-818888 - -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGCGGATGCTGTCCATGCGCAGAGCCTGCCCTGACCTACATTCGAA--TTTATTGGTCATCTAA---GGCAGCCACAGCCAA------------------AGGCATTTACAAAA--AAATAAATACACACGCAACGCGAGAAGGTTAATAATCG--TTT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droWil2 scf2_1100000004909:9666987-9667047 - --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGGCCATGCGCATATCGTACCCTGACCTACATTTGCGGAATTATTGGTCATCCTT-----------------------------------TCAGCA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droVir3 scaffold_13042:2176301-2176357 + ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCCATGCGCACATCGCATCCTGACCTACATTCC-A--ATTATTGGTCATCTAA-----------------------------------GCAGCAG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
TTTTCG------T--T-T--T----TAA-AACAA---CCC----------CGAAGATTGCAATATTTT--GAGC-TTGAGAGGTGAGTGGCGTCTGCTATTTGTTGT-T------GTTGCTCGGGTAGAGGGAT----------------------------------------------------------TCCT-----T-------CGGATGAAATAATAGGGATGCGGATGCTGGCCATGCGCAGAGGATGCCCTGACCTACATTCCCG--CTTATTGGCCATCCGA-----------------------------------GCAGCAGTTGCAAAA--GGATAAATACACACGCAACACGAGCTGGTTAATAAGCG--CTTT----------------TCCGATTTTCCAATTGTCCGAC---ATTCC---------T--ATCCCTCC-AG--C--------------------------------------------------C--------------TCCATCCGCGCG-CTGAAAAGT-GTGCAAAGAAATCAACAA-AAAAGAG-----------------------------AAGAAAA-----------------AAAAAGTAAATATACATATAT---AATCGAA-AAGGA-CAC-----TCTGGA-------AA------------------------------------------AGCAGATACTT---------GAGTGCAATATGTCC-AGCAATAT--------ATTSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
........................................................TTGCAATATTTT--GAGC-TTGAGAGGTG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00100000000100000000
......................................................................................................................................................................................................................................................................................................................................................................................................................GATTTTCCAATTGTCCGA........................................................................................................................................................................................................................................................................................................................................................................1811.00110000000000000000
................................................................................................................................................................................................................................................................................................................................................................CACACGCAACACGAGCTG..............................................................................................................................................................................................................................................................................................................................................................................................................................1811.00110000000000000000
droSec2
TTTTTG------T--T-T--T----TAA-AACAA---CCC----------CGAAGATTGCAATATTTT--GAGC-TTGAGAGGTGAGTGGCGTCTGCTATTTGTTGT-T------GTTGCTCGGGTAGAGGGAT----------------------------------------------------------TCCT-----T-------GGGATGAAATAATAGGGATGCGGATGCTGGCCATGCGCAGAGGATGCCCTGACCTACATTCCCG--CTTATTGGCCATCCGA-----------------------------------GCAGCAGTTGCAAAA--GGATAAATACACACGCAACACGAGCTGGTTAATAAGCG--CTTT----------------TCCGATTTTCCAATTGTCCGAC---ATTCC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
...............................................................................................................................................................................................................................................................................................................................................................ACACACGCAACACGAGCTGGT............................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010100
dm3
TTTTTC------T--T-T--T----TAA-AACAA---TCT----------TGAAGATTGCATTATTTT--GAGC-TTGAGAGGTGAGTGGCGTCTGCTATTTGTTGT-T------GTTGCTCGGGTAGAGGGAT----------------------------------------------------------TCCT-----T-------CGGATGAAATAATAGGGATGCGGATGCTGGCCATGCGCAGAGCATGCCCTGACCTACATTCCCG--TTTATTGGCCATCCGA-----------------------------------GCAGCAGTTGCAAAA--GGATAAATACACACGCAACACGAGCTGGTTAATAAGCG--CTTT----------------TCCGATTTTCCAATTGTCCGAC---ATTCC---------T--ATCCCTCC-AG--C--------------------------------------------------C--------------TCCATCCGCGCG-CTGAAAAGT-GTGCAAAGAAATCAACAA-AAAAGAG--------------------------AAAAAGAAA---------------------AAGTAAATATACATATAT---AATCGAA-AAGGA-CAC-----TCTGAA-------AA------------------------------------------AGAAGATACTT---------GAGTGCAATATGTCC-AGCAATAT--------TTTSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACTT---------GAGTGCAATATGTCC-AG.................2217.0070000000000000000000000000000000000000000000000000000000001060000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACTT---------GAGTGCAATATGTCC-AGCAA..............2513.0030000000000000000000000000000000000000000000000000000000000120000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACATATAT---AATCGAA-AAGGA-CAC-----TCT.............................................................................................................2613.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................AATAATAGGGATGCGGATG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1912.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................CAGCAGTTGCAAAA--GGATAAA..................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................TGCAAAA--GGATAAATACACACGCAA.......................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................GGGTAGAGGGAT----------------------------------------------------------TCCT-----T-------CGGATGAAAT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACTT---------GAGTGCAATATGTCC-AGCAATAT--------...2811.0010000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................ACACGCAACACGAGCTGGT............................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................ATAAGCG--CTTT----------------TCCGATTTTC...................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACTT---------GAGTGCAATATGTCC-A..................2111.0010000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAAATATACATATAT---AATCGAA-AAGGA-C.......................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACTT---------GAGTGCAATATGTCC-AGCA...............2411.0010000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................TACACACGCAACACGAGCTGGTTA..........................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AA-AAAAGAG--------------------------AAAAAGAAA---------------------A..........................................................................................................................................................1921.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A-------AA------------------------------------------AGAAGATACTT---------GAGTGCT............................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................GCAGTTGCAAAA--GGATAAATA................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000
....................................................................................................TTGTTGT-T------GTTGCTCGGGTA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................A--GGATAAATACACACGCAACA.....................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................TTCCCG--TTTATTGGCCATCCGA-----------------------------------GCAGC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACTT---------GAGTGCAATATGTCC-...................2011.0010000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTT---------GAGTGCAATATGTCC-AG.................2011.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................AGTTGCAAAA--GGATAAATAC...............................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000
................................................................TTTT--GAGC-TTGAGAGGTGAGTGGCG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACTT---------GAGTGCAATATGTCC-AGC................2311.0010000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................AGTTGCAAAA--GGATAAATACA..............................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................GTTGCAAAA--GGATAAATA................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATACTT---------GAGTGCAATATGTC.....................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACTT---------GAGTGCAATATGTCC-AGCAATAT--------TTT3111.0010000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................GCCATCCGA-----------------------------------GCAGCAGTTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000
.....................................................................................................TGTTGT-T------GTTGCTCGGGTAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000
.............................................................TTATTTT--GAGC-TTGAGAGGTGAGT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A-AAAAGAG--------------------------AAAAAGAAA---------------------AA.........................................................................................................................................................1920.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AA-AAAAGAG--------------------------AAAAAGAAA---------------------...........................................................................................................................................................1830.3310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droEre2
TTAT-----------T-T--T----GAA-AACAA---TCG----------CGAACACTGCAATATTTT--GAGC-TTAAGAGGTGAGTGGCGTCTGCTATTTGTTGT-T------GGGGCTCGGGCAGAGGGATTC--------------------------------------------------------TCAT-----T-------CGGCTATAATAAAAGGGATGCGGATGCTGGCCATGCGCAGAGCATGTCCTGACCTACATTCCCG--CTTATTGGCCATCCAA-----------------------------------GCAGCAGTTGCAAAA--GAATAAATACACACGCAACACGGGCTGGTTAATAAACG--CTTT----------------TCCGATTTTCCAATTGTCGGAC---ATTCC---------C--TACCCTCC-AG--C--------------------------------------------------C--------------GCCATCCGAGCG-CTGAAAAGT-GTGAAAAGAAATCAACAA-A--------------------AATAACTA--AAAAAAAGAAA-------------------AGAAGTAAATATACATATAT---AATCGAA-AAGGA-CCC-----TCTGGA-------A-------------------------------------------AGCAGATACTTG--------GAGTGCAATATGTCC-AGCCATAT--------ATTSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACATATAT---AATCGAA-AAGGA-CCC-----TC..............................................................................................................2511.0010000100
..............................................................................................................................................................................................................................................................................................................................................................TACACACGCAACACGGGCTGG.............................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000010
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCGAGCG-CTGAAAAGT-G............................................................................................................................................................................................................................................1811.0010000010
droYak3
TTAC--------A--T-T--T----AAA-AACAA---TCC----------CGAACATTGAAATATTTT--GAGC-TTTAGAGGTGAGTGGCGTCTGCTATTTGTTGT-TTGGCATGGAGTTCGGGTAGAGGGTT----------------------------------------------------------TCCT-----T-------CGGATGGAATAATAGGGATGCGGATGCTGGCCATGCGCAGAGCATGCCCTGACCTACATTCCCG--CTTATTGGCCATCCAA-----------------------------------GCAGCAGTTGCAAAA--GGATAAATACACACGCAACACGAGCTGGTTAATAAGCG--CTTTTCTGATTTACTGATTTTCCGATTTTCCAATTGTCCGAC---ATTCC---------CCAATCCCTCC-AG--C--------------------------------------------------CC-------------TCCATCCGCGCG-CTGAATAGT-GTGCAAAGAAATCAACACGAAAAGTG----------AGAATATAT--AT--------------------------------------------CATCCATAGGAATCGAA-AAGGATCTC-----GCTGGA-------AATC-----------------------------------------GCAAATACTC---------GAGTGCAATATGTCC-AGCAATTT--------AATSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAA-AAGGATCTC-----GCTGGA-------A..................................................................................................1911.00100000010000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGAA-AAGGATCTC-----GCTGGA-------AATC-----------------------------------------......................................................2311.00100100000000
droEug1
ATTTCT------T--T-TTGT----T-AG-AAAA---CAC----------CGCACTTTGTAATTGATT--GCGC-TTAAGAGGTGAGTGGTGTCTCTTATTTATTT--T------GGGGCTCGGGAAAGGGGGT-T-----TCG------------------------------------TTT-----CGGTTTCT-----A-------CTGACAGGATAATAGGGATGCGGATGCTGGCCATGCGCAGAGCATGCCCTGACCTACATTCCCG--CTTATTGGCTATCCAA-----------------------------------GCAGCAGTTGCAAAA--GGATAAATACACACGCAACACGAGCTGGTTAATAAACG--CTTT----------------TCCGATTTTCCAATT--CCGTC---TTTCC---------T--TCCCCTCC-AG----------------------------------------------------------------------------CGCG-CTGCAAAAGTGT-CAAACAAAAATACACG-----------------------------------------------------------------------------------------TA-AATTA-CTC-----TTGGGA-------C-------------------------------------------TCCTGACTCCTGAAGATGTTAAATACGCTATGTTA-AATAATAT--------ATTSizeHit CountTotal NormTotal
No Reads
droBia1
GTAT-----------TTTTAG----G-AG-GAAA---ACA----------AGGACTTCTTTATTGTTT--GAGC-TGAGGTGGTGAGTG-CGTTTCCTATTTATTT--C------GGGGCTCGGGAC-CGGACT-------TCG------------------------------------TTT-----CGGCTCGTCCTCGT-------C--------GTCTAGGGATGTGGATGCTGGCCATGCGCAGAGCCTGCCCTGACCTACATTCCCG--CTTATTGGCCATCCAA-----------------------------------GCAGCAGTTGCAAAA--GGATAAATACACACGCAACACGAGCTGGTTAATAAACG--CTTT----------------TCCGATTTTCCAATTTTCCGAC---ACAC-------TCCT--C--------AGCCCCCG----------------------------------------------CCCCC----CGCAGCCAACAGCCGCGCG-CTGCAAAGT-GT-CAAAGAAGAATACTCG-----------------------------------------------------------------------------------------AGCTAGGA-CTC-----GTTGGC-------A-------------------------------------------TCCAGATCCTT---------GAGTGCAATATGCCC-AGT---CT--------ACGSizeHit CountTotal NormTotal
No Reads
droTak1
TTTTG---------------G----C-AG-GAAA---AAT----------AGATATTTGTAATTGTTT--GAGC-CTAAGAGGTGAGTCTCGTCTCCTATTTATTT--C------GGGGTTCGGTTCGTT----------------------------------------------------------CGGTTTTT-----ACGAACTACGGATAGGATAATAGGGATGCGGATGCTGGCCATGCGCAGAGCATCTCCTGACCTACATTCCCG--CTTATTGGTCATCCAA-----------------------------------GCAGCAGTTGCAAAA--GGATAAATACACACGCAACACGAGCTGGTTAATAAACG--CTTT----------------TCCGATTTTCCAATTTTCCGAC---TTTTCGACTC-T--------CCT-C-TGCCCCCGCAGCAGCAACAA----CA-------------------------------------------------------------------------AC-AAGATATTCG-----------------------------CAA-A-------------------------------------------------------AA-AAGGA-CCC-----TCTGGC-------A-------------------------------------------TTCAGATCCTT---------GAGTGCAATATGTCC-AAT---TT--------ATTSizeHit CountTotal NormTotal
No Reads
droEle1
CTTGCA------T--T-T--TCTACT-ACAAAAA---ACT----------CTTTCATTGTAATTGTTT--GAGA-TTGAGAGGTGAGTCGC-----CTTTTTAATTT-T------GGTGTTCGGGAG-GGGACT-T-----TCG------------------------------------TTTGGACTCGGTTCCT-----A-------CGGATGGGATAATAGGGATGCGGATGCTGGCCATGCGCAGAGCATGTCCTGACCTACATTCTCG--CTTATTGGCCATCCAA-----------------------------------GCAGCAGTTGCAAAA--AGATAAATACACACGCAACACGAGCTGGTTAATAAACG--CTTT----------------TCCGATTTTCCAACTATCCGACGTCTTTTG---------T--TTCCCCCC-AG--C--------------------------------------------------C--------------A-----CACGCG-CTGAATAGT-TGGCAAACAAAAATATCCG-----------------------------------------------------------------------------------------AGCAAGGA-CTC-----CCTGGG-------AAATGTGAAT-----TCAGCTCCGGATA----AC---------------ATTCTC---------AAGTGCAATATGTCG-AAT---AT--------ATTSizeHit CountTotal NormTotal
No Reads
droRho1
TTGCCA------TATT---TT----A-A-GAAGA---ACT----------CGTACTTTGTAATTGTTT--GAGC-TTGAGAGGTGAGT-----CTCCTATTTATTTT-T-------GCGTTTGGGAG-GGGGCT-TTCGTTTCG------------------------------------TTTAGATTCGGCTCCT-----A-------CGGATAGGATAATAGGGATGCGGATGCTGGCCATGCGCAGAGCATGTCCTGACCTACATTCTCG--CTTATTGGCCATCCAA-----------------------------------GCAGCAGTTGCAAAA--AGATAAATACACACGCAACACGAGCTGATTAATAAACG--CTTT----------------TCCGATTTTCCAATTTTGCGAC---TTTT-------------TTCCCCCC-AG--C--------------------------------------------------C--------------A-----CATGCG-CTGAAAAGT-TGACAAACAAAAATATTCG-----------------------------------------------------------------------------------------CAAAAGGA-CTG-----TCTGGG-------AAATGTAAAAC----CCAGATCCGGATA----AC---------------GTCCTC---------AAGTGCAATATGTCC-AAT---AT--------ATTSizeHit CountTotal NormTotal
No Reads
droFic1
TTTTG--------------------G-AG-TAAG---CTG----------CG----------TAGTTT--GTAT-TTAAGAGGTGAGT-----CAGCTATTTATTTT-T------TACTTTCGG-------------------------------------------------------------------CTCCT-----T-------CGGTAAGGATAAAAGGGATGCGGATGCTGGCCATGCGCAGAGAAAGTCCTGACCTACATTCTCG--CTTATTGGCCATCCAATGGGGCAGCCAGGGCCAA-----------------GCAGCAGTTGCAAAA--AGATAAATACACACGCAACACGAGCTGGTTAATAAACG--CTTT----------------TCCGATTTTCCAATTTTCCGAC---TTTTC---------------CCTCTTAG--C--------------------------------------------------T---------------CC-CCCGAACG-CTGAAAAAG-GGGCAAACAAAAATATTCG-----------------------------------------------------------------------------------------CA-AAGGA-CTCGACTGTTTGCG-------AAATGTGAAT-----CCAGCTACGGAT---TTAC---------------GTTCTT---------ATGTGCAATATGTCC-ATT---AT--------ATTSizeHit CountTotal NormTotal
No Reads
droKik1
CTTTAA------T--T-A--T----TAA-AAGAAGAGTCCCTGGATTAGGGAAGGATTGCGGGTTTCTCAACGC-ATAAGAGGTAAGTT-TGTTTGCTGTTTATTT--T------GGGCTTC---------------------A------------------------------------TGG-----CGGAGCTTGGAGAA-------TGGCCAGGATAACAGGGATAGGGATGCTGGCCATGCGCAGTGTATGCCCTGACCTACATTCGCG--CTTATTGGCCATCCAATGGGGCAGCCAGGGCCAGCAGCAGCCGCAGCAGCAGCAGCAGTTGCAAAA--AGATAAATACACACGCAACACGAGCTGGTTAATAAAAGTGCTTT----------------CC---TTCT---------CGCC---TTTC----------------TCTCC-----------------------------------------------------------------------------------TCAAAAA--------------------------AGAAAAAAAAAGAAAGAAAATAA--ATAG-AAAAGGAAAGCTGAAGCTGTAAAGCGGACA---------------------AATCGAA-AAGAA-AACA----TCTGGGAAAATGGAAATGTGAGT-----C-----CCGGGCAGCTTACCTTCTGTGTGTCGTGTGTC-------------CAGCAGTATGCCC-AAT---ATCCTCTCCAGTTSizeHit CountTotal NormTotal
No Reads
droAna3
GTTTTCTGGACAGTTT---TT----G-AG-GATA---TAA----------CG----------CATTTT--GTGTCGCAATTAGTAAGTGTCGGCCGTGGTTTATGGCC----------------------------------CATTGCGTGGTGCGAAAAGTGGGAGTTGTGGGTGGCTAGGT-----C-------G------------GGGACTGGTGTCT-GGTAGCTGGATGCTGGCCATGCGCAGAGAATGCCCTGACCTACATTCTCG--CTTATTGGCCGTCCAATGGGGCAGCCTGGGCCAGGA---------------GCAGCAGTTGCAAAATAATATAAATACACACGCAACACGAGCCAGTTAATAAAAG--CATC----------------TCGTCCTTTCC----------------------------CCA-------TTT--TCT------------------------------------------------------------------------CTCGTCTGAAAAA--------AT------------------AAAGAAATAGA---GGCGATTGCAG-AAAAAGAAAA-----------------ACA-ATTGGAGGCA------------------AA------CAACTGGCTGC--------AAATGTGATTGCCAG--------GGAA-----------------AACAGAG--------------CTTACAATATGTCC-AGA---AA--------GTGSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
No Reads
droBip1
AAAT-----------T---TT----A-AG-GATC---TGG----------CGAG--------GATTTT--GTGT-CCAATTAGTAAGTGTTTGCCGTGGTTTATGGCC----------------------------------CATTGAGTGGTGCGAAAAGTGTCAGTCGTGGGTGGAT------------------------------GGGACGGGAGGCTGGGGAC-TGGATGCTGGCCATGCGCAGAGAATGCCCTGACCTACATTCTTG--CTTATTGGCCATCCAATGGGGCAGCCTGGGCCAGGA---------------GCAGCAGTTGCAAAATAATATAAATACACACGCAACACGAGCTAGTTAATAAAAG--CATC----------------TCG-----------------TC---CTTTT---TCCC--CCA-------TTT--TCT------------------------------------------------------------------------CGTGTCTGAAA-----------CAAAAAAT-----------AAAGA-ACAGA---GACGATTACAG-AAAAAGAAAA-----------------ACAAATTAGAGACA------------------AA------CAACTGGTTGG--------AAATGTGATTGGTAG-----------------------------CGAAAAACCGA---------GCTTACAATATGTCC-AGT---A---------AGTSizeHit CountTotal NormTotal
No Reads
dp5
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGCGGATGCTGTCCATGCGCAGAGCCTGCCCTGACCTACATTCGAA--TTTATTGGTCATCTAA---GGCAGCCACAGCCAA------------------AGGCATTTACAAAA--AAATAAATACACACGCAACGCGAGAAGGTTAATAATCG--TTTA----------------CTA----------------GCC-------------------------G-T-TGTTTTTGTAAAAAAAATAATTTTCAAAAACTTAAATGCACAAAAAAACAGCCAACACTGACGT--------------------------------------------------------------------------------------------------------------------AAAACT------------------AA------CA---------------------------------------------------------------------TCT---------G-CTGCATTATGCCTTAAC---TT--------AATSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
..........................................................................................................................................................................................................................................................................................................................................................TAAATACACACGCAACGCGA..................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010100000000
droPer2
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGCGGATGCTGTCCATGCGCAGAGCCTGCCCTGACCTACATTCGAA--TTTATTGGTCATCTAA---GGCAGCCACAGCCAA------------------AGGCATTTACAAAA--AAATAAATACACACGCAACGCGAGAAGGTTAATAATCG--TTT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
No Reads
droWil2
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGGCCATGCGCATATCGTACCCTGACCTACATTTGCGGAATTATTGGTCATCCTT-----------------------------------TCAGCA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
No Reads
droVir3
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCCATGCGCACATCGCATCCTGACCTACATTCC-A--ATTATTGGTCATCTAA-----------------------------------GCAGCAG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
No Reads

Generated: 05/19/2015 at 05:35 AM