| droSim2 | 
	2l:9137216-9137465 + | 
	dsi_4929 | 
	GCTGAGTGCCCAAGTGT----GAATGTGCATG--TGTGTGT----ACTTGGTTGTAAGCAGGCTCTTAAGTTTCT-TTTAAGAGAGACTTGAGTT-CAAGCATTGCCAGCTTA----AAAGC-ATTTTTAAAATTTTGTAACGGAAACA-G-CAGCT-----T--------------------------------------------------------------------------------------------------------------------TA-ATAATAACTTTA--A--------TGTTTT----AA----------TACTCTA----TTTATAA---TA-------AAGA-ATCTT-------GTTTTCATTTCAGCTTTTTCAAGG-CA------CCTTAAACTAATACAAGGTAAGCAATTT-AA----------AATATTT | 
	| droSec2 | 
	scaffold_3:4900648-4900901 + | 
	 | 
	GCTGAGTGCCCAAGTGT----GAATGTGCACA--TGTGTGT----ACTTGGTTGTAAGCAGGCTCTTAAGTTTCT-TTTAAGAGAGACTTGAGTT-CAAGCATTGCCAGATTA----AAAGC-ATTTTTAAAATTTTGTAACGGAAACA-G-CAGCT-----T--------------------------------------------------------------------------------------------------------------------TA-ATAATAACTTTA--AT----AACTGTTTT----AG----------TACTCTA----TTTATAA---TA-------AAGA-ATCTT-------GTTTTCATTTCAGCTTTTTCGAGG-CA------GCTTAAATTAATACAAGGTAAGCAATTT-AA----------AATATTT | 
	| dm3 | 
	chr2L:9446821-9447067 + | 
	 | 
	GCTGAGTGCCCAAGTGT----GAATGTGCATG--CA-----------TTGGGTGTAAGCAGGCTCTTAAGTTTCT-TTTAAGAGAGACTTGAGTT-CAAGCATTGCCAGATTA----AAAAC-ATTTTTAAAATTTTGTAACGGAAACA-G-CAGCT-----T--------------------------------------------------------------------------------------------------------------------AA-ATAATAACTTTA--AT----AACTGCTTT----AA----------TACTCTA----TTTATAA---TA-------AAGA-ATATT-------TTTTTCATTTCAGCTTTTTCAAGG-CA------CCTTAAACTAATACAAGGTAAGCAATTT-CA----------AATATTT | 
	| droEre2 | 
	scaffold_4929:10056541-10056823 + | 
	 | 
	GCTGAGTGCCCAAGTGT----GAATGTGCATG--TGTGTAC----TTGTGTGTGTAAGCAGGCTCTTAAGTTTCT-TTTAAGAGAGACTTGAGTT-CGAGCGTTGCCAGAGTA----AAAGC-ATTTTTAAAATTTTGTAACGGCAACA-G-CAGCA-----T-----------------------TTATGGCTATTTCAAATTTGATACCCATTG---------------------------------------------------------------TA-ATGATAACC-----------------TTT----TA----------TTATCTA----TTT---A---TC-------AAGA-ATATT--GTTTTCCTCTCATTTCAGCACTTGCAA-GCGG------CGTTAAACGTTTAATATGTAAGTAATTC-TA--AATATTCTAATATTT | 
	| droYak3 | 
	2L:12120081-12120360 + | 
	 | 
	GCTGAGTGCCCATGTGT----GAATGTGCATG--GGTACGC----CTGTGTATGTAAGCTGGCTCTTAAGTTTCT-TTTAAGAGAGACTTGAGTT-AAAGCGTTGCCAGAATA----AAAGC-ATGTTTTAAATATTGTAACGGTTAGA-G-CAGCA-----T-----------------------TTATAT----------T---------------------CTACAATTCGTTTTATTTTAAAA------------------------------------------ATGTG--AT----AGTCGTTTG----AA----------ACCTCTC----TTATTGA---TC-------AACA-ATATG--GTTTTTCTTTCTTTTCAGCCTTTAAAA-GCGA------CTTTGAACTATTAAGAGGTAAGTAATTA-AA----------AAAATTG | 
	| droEug1 | 
	scf7180000406904:475688-475974 + | 
	 | 
	GCTGAGTGGCCAGATGT----GTA------------TGTGTG----AACT-TGGTGAGCAAGCTCTTAAGTTCATATTTAAGAGAGGCTTGAGTT-GGAGAATTGCCAGCATA----AAAAT-GTTTTTGAAATTTTGTAACGGCAACT-G-AACTGCGAGGGTTGTATTTGAGAATATG--AAATTTATGC----------------------------------TTGTT--ATTTTAATTTAAAA--------------------------------------GTA-----A--AT----AAGATTTGA----AA----------AATTGTA----TTTCTAA---TT-------AAAA-ATT--GTTTCTTTCTTTCATTTCAGCTTTTCCA-GATTC------AATTTTGAAACTAAAGGGTAAGTTATTT-AA----------CATA--- | 
	| droBia1 | 
	scf7180000302408:3740045-3740331 - | 
	 | 
	GCTGAGTGCCCATATGT----GTG------------TGTGCA------TTCTTGTGAGCAAGCTCTTAAGTACTT-CTTAAGAGAGGCTTGAGTG-CAGGCATTGCCAGCTTA----AAAATTAATTTGAAAAATATTTAACGGTAATT-G-AACTTGAAAGAT-GGTTAAAAAGAGTTCACAAAT----------------------------TTTAGCAT---------------AATTATAAAT------------------------------------------GTATA--AA----GACTGTTAA----A-----------------GTTTGGATCTAA---TT-------CTAT-TTA--TTTTCTTTTCTACATTCCAGATTTTGGA-GACGC------ATTTCTATAATTAAAGGGTAAGTGTTTT-AT----TATTAAAATATTT | 
	| droTak1 | 
	scf7180000415702:27862-27980 - | 
	 | 
	GCTGAGTGCCCATATGT----GTA------------AGTGCG------TTCTTGTGAGCGAGCTCTTAAGTTT-T-TTTAAGAGAGGCTTGAGCT-CAAGCATTGCCAACTTG----AAATTAATTTTAAAAAATGTTTAACGGTAAC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- | 
	| droEle1 | 
	scf7180000491186:2418218-2418525 + | 
	 | 
	GCTGAGTGTTCGTATAG----ACATTTGCGAGTGTGTGTGTTCTTTTGTGCGTATGAGCAGGCTCTTAAGTGCTT-TTTAAGAGCGGCTTCAGTA-CAAGCATTGCCATGTTA----AAAAAAAGTTTTAAAATTCTTTAACGGTAACT-G-AATCTAGAAGAT-GTTTTACAAGATGCT--AAATTTGTAT----------C---------------------TTATGTT--ATCTAAATTA-AAA------------------------------------------GACTG--CC----AACCGTTTA----AA----------GATTATT----TTTCTAA---TC-------CCAT-ATT---TTTCTGTTTTACATTTCAGCTTTCGGAA-ATAA------ACTCTTACAACTAAAAGGTAAGTTATTA-AA----------AATAAAT | 
	| droRho1 | 
	scf7180000778312:29764-30078 + | 
	 | 
	GCTGAGTGTTCATATAT----TCATATGTGAGTGTGTGCCTACTTCTGTGTGTGAAAGCAAGCTCTTAAGTGTCT-TGTAAGAGCGGCTTGACTA-CAAGCATTGCCAACTTA----AAAAACAATTTAAAAATTCATTAACGGTAACT-G-AATCTAAAAGAT-GTTTTAGAAGAAGATACAAAT----------------------------TTGAGTACTGATTTGTT--ATCTAACTTT-TTT------------------------------------------GATTGAATT----AAACATTTG----AA----------GATTATT----TTTCTAA---TC-------CAAA-ACT---TTTTCTTTTTTTATTTCAGCCTTTGGGG-ATAA------ACTTTTACAACTAAAAGGTAAGTAACTT-AA----------CATAATT | 
	| droFic1 | 
	scf7180000454076:220482-220751 - | 
	 | 
	GCTGAGTGCTCATACGTTCGTAAATGAGCATG--TGTGTCTG----TTCTTGTGTGCGTAAGCTCTTAAGTTTTT-CTCAAGAGAGGCTTGAGTT-CAAGCATTGCCAACATA----GAAAC-ATTTTTGAAACTTTATAACGGTTACTTT-T--CTTAAATAT-GATAAAGAAGATTATTGTAAT----------------------------TTGAGCCC---------------------------------------------------------------------------------------------------------TTG-AAATCTTTTTCTAA---TC-------CATG-G-----TTTCTGTTATGTATTTCAGGTTTTGGA-GACAC------ATTACTATAATTAAAGGGTAAGTGATTT-GA----------CATAAAT | 
	| droKik1 | 
	scf7180000302679:1345342-1345682 + | 
	 | 
	GCTGAGTGCCCGT-TGT----GTG------TG--TGTGTGCG------TTC-------ATGGCTCTTAAGTTTGC-TTTAAGAGAGGCTTGAGCT-CAAGCATTGCCAACTTG----AAGAA-ACTATTTGAATTATTTAACGGCCATTTTGGGA--TA------------------------------------GTTCAGCTTTAACTTAAATTTG-----------ATT--ATTTTTACTTAGTGGTAATTAAGGAATTGAACAAAATCTGCAACATTATCTAATAGCTAA---ATA---AGTTA-TTT----TATTATATTTTCTTA-AAAT-TTAAACTAA---TC-------GATTTATT---TAAATATTTTGTATTTCAGCTGTGAAA-ATCACATCATCCATTCAACAATTAAAAGGTGAGTTTAA---ACCAGTTTTATAAAATTT | 
	| droAna3 | 
	scaffold_12943:799307-799506 + | 
	 | 
	CTTGAGTGTCTGTG----------------------AGTGT----------TCTCGAGCAAGCTCTTAAGTTTTG-TTTAAGAGAGGCCCCAGAG-CCGGCGTTGCCAGCTTT----AA------------AATTATTTAACGGCTTTT-T-AA-----------------------------------------------ACTT-----------------------------------------------------------------------------------------------------G------------------------TGC----TATTTCGTTAC---TAATTCTAT-A----ATTTCTTTC-CTAATTGCAGGTTCTAGA-CAACG------ACTACTGGTTCT-AAGGGTAAGCTTTCTTAA----------ATTATCC | 
	| droBip1 | 
	scf7180000396728:2326051-2326180 - | 
	 | 
	CTCAAGTAGCT---------------------------------------GCTGCGAGCAAGCTCTTAAGTTCTA-TTTAAGAGAGGCTTTAGAG-CCGGCATTGCCAGCTTT----AAAA------------CTATTTAACGCTTTTT-T-AA-----------------------------------------------ACTG-----------------------------------------------------------------------------------------------------A------------------------AGA----TATATCAATTT---TTATTCTTT-A----TT-------------TACA--------------------------------------------------------------------- | 
	| dp5 | 
	4_group1:849080-849358 - | 
	 | 
	CTTGTTT-TTTATGTGT----GTGCGTGTGTG--TGTGTGT----AAACACAAGAGAGCAAGCTCTTAAGTTCTT-GTTAAGAGAATCTGGGGCCGGAGGCATTGCCAGCCCTTAGAAAACT-GGTGTTTGAATTT-TTAACCGACATTTG-AGT--TGGCTT-----------------------------------T--------------------------------------------------------------------------------GA-GCAAAGATCTTA--CTAAAA---TGCATTTATTTG----------TTGTGTATTTTTAACTAA---CT-------TATG-ATT---TTTCTGTTCTTTATTCCAGCATTACAA-GGCACATACAAATTAGAACAACTTTAAGGTAAGTCTTT---A----------GATGTTT | 
	| droPer2 | 
	scaffold_5:4361846-4362124 + | 
	 | 
	CTTAT-TTTTTATGTGT----GTGCGTGTGTG--TGTGTGT----AAACACAAGAGAGCAAGCTCTTAAGTTCTT-GTTAAGAGTATCTTGGGCCGGAGGCATTGCCAGCCCTTAGAAAAGT-GGTGTTTGAATTT-TTAACCGACATTTG-AGT--TGGCCT-----------------------------------T--------------------------------------------------------------------------------GA-GCAAAGATCTTA--ATAAAA---TGCATTTATTTA----------TTGTGAATTTTTAACTTA---TT-------TATG-ATT---TTTCTATTCTTTATTCCAGCATTACAA-GACACATACAAATTAGAACCATTTTAAGGTAAGTCTTT---A----------GATGTTT | 
	| droWil2 | 
	scf2_1100000004585:7506568-7506715 - | 
	 | 
	GCCCAAAAATAAGG--------AACGTG---------------------------GCAAAGACTCTTAAGTTCATTCTTAAGAGTGAAATG---------CATTTGCAGCTGA----GA-AT-ATATGTACAATACATTAGTGAAAAAA-A-CA--------------------------------------------------------------------------------------------------------------------------------------------------------TTTTA----AA----------ACTGACC----TTTTTAA---TTAAT-----AAA-ACT----TTTCTTTTTTC------------------------------------------------------------------------TTT | 
	| droGri2 | 
	scaffold_15126:7498890-7499044 - | 
	 | 
	CTTAAGTGTCCACAA-T----GTC------------ATTGC-----TATTCTCAACTGCAAGCTCTTTAATTCGA-ACTAAGAGCGCATTTCTCTCGCAGCGTTGCCAGCACG----AAATG-TAAATTTAAATTTTTTAACTGACTTTAA-GTGCT-----C-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A---AC-------TAAA-ATGTA--TTTTTTCTCTC------------------------------------------------------------------------TTT |