ID:

dsi_4917

 Coordinate:

4:114087-114236 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-2.2 -1.4 -1.2

Flybase annnotation

intergenic

Repeatable elements

NameClassFamilyStrand
DNAREP1_DMRCHelitron+
AT_richLow_complexityLow_complexity+

Sense Strand Reads

ATTTCTATTATGTCCGCCTGTTCGTACGGACGTCATGATCCTGGGAACTATAAAAGCTAGAAATGTACTCGCTTATAGATATTTCATAAAATAATTAATAATTAAATAATTTAAAAAATTATTTATTTCCATAAACAATATATCCTTTATTAAAATGAACGTCACGAACTTATAGACCTTAAATTGTATCTTTATTTCAGACTGGTACTCTTACGGAAGATGGACTTGATATGTGGGGGGTTGTGCCCAA
**********************************************************************************************************************...(((((((..(((((..........)))))..))))))).........................****************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553485
Chicharo_3 day-old ovaries
 SRR902009
testis
 SRR553486
Makindu_3 day-old ovaries
 SRR902008
ovaries
 SRR618934
dsim w501 ovaries
 M025
embryo
 SRR553487
NRT_0-2 hours eggs
 SRR553488
RT_0-2 hours eggs
 O001
Testis
 M053
female body
 GSM343915
embryo
................................................................................................................................................................................................................TCTTACGGAAGATGGACTTGATATG................. 25 0 1 68.00 68 51 2 13 1 1 0 0 0 0 0 0
..........................................................................................................................................................................................................TGGTACTCTTACGGAAGATGGACTTGA..................... 27 0 1 47.00 47 0 31 0 15 1 0 0 0 0 0 0
.............................................................................................................................................................................................................TACTCTTACGGAAGATGGACTTGATATG................. 28 0 1 23.00 23 16 0 6 1 0 0 0 0 0 0 0
.............................................................................................................................................................................................................TACTCTTACGGAAGATGGACTTGATA................... 26 0 1 17.00 17 14 0 0 0 0 0 2 1 0 0 0
...................................................................................................................................................................................................................TACGGAAGATGGACTTGATATGTGGGG............ 27 0 1 13.00 13 4 8 0 0 0 0 1 0 0 0 0
...................................................................................................................................................................................................................TACGGAAGATGGACTTGATATGTG............... 24 0 1 12.00 12 8 0 2 0 1 0 0 0 1 0 0
................................................................................................................................................................................................................TCTTACGGAAGATGGACTTGATATGTG............... 27 0 1 9.00 9 6 0 2 0 1 0 0 0 0 0 0
.....................................................................................................................................................................................................AAGACTGGTACTCTTACGGAAGATGGAC......................... 28 1 1 9.00 9 2 6 1 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................TACGGAAGATGGACTTGATATGTGGG............. 26 0 1 8.00 8 1 5 0 2 0 0 0 0 0 0 0
..................................................................................................................................................................................................................TTACGGAAGATGGACTTGATATG................. 23 0 1 8.00 8 5 0 3 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................TGGTACTCTTACGGAAGATGGACTTGATA................... 29 0 1 6.00 6 1 5 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................TGGTACTCTTACGGAAGATGGACTT....................... 25 0 1 6.00 6 0 1 0 1 4 0 0 0 0 0 0
............................................................................................................................................................................................................................TGGACTTGATATGTGGGGGGTTGTGC.... 26 0 1 6.00 6 4 0 2 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................TTACGGAAGATGGACTTGATATGT................ 24 0 1 6.00 6 5 0 0 0 0 1 0 0 0 0 0
.........................................TGGGAACTATAAAAGCTAGAAATGTACT..................................................................................................................................................................................... 28 0 1 5.00 5 2 0 3 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................CGGAAGATGGACTTGATATGTGGGGG........... 26 0 1 5.00 5 0 3 1 1 0 0 0 0 0 0 0
..........................................................................................................................................................................................................TGGTACTCTTACGGAAGATGGACTTGAT.................... 28 0 1 5.00 5 0 5 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................TACGGAAGATGGACTTGATATGTGGGGG........... 28 0 1 5.00 5 1 4 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................TACGGAAGATGGACTTGATATGT................ 23 0 1 4.00 4 4 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................CTTACGGAAGATGGACTTGATATGTG............... 26 0 1 4.00 4 3 0 1 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................TACGGAAGATGGACTTGATATGTGGGGGGT......... 30 0 1 3.00 3 3 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................CGGAAGATGGACTTGATATGTGGGG............ 25 0 1 3.00 3 0 3 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................ACAAGACTGGTACTCTTACGGAAGA.............................. 25 3 1 3.00 3 1 0 0 1 1 0 0 0 0 0 0
...............................................................................................................................................................................................................CTCTTACGGAAGATGGACTTGATATG................. 26 0 1 3.00 3 3 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................CTCTTACGGAAGATGGAC......................... 18 0 1 3.00 3 0 0 0 0 0 3 0 0 0 0 0
..........................................................................................................................................................................................................TGGTACTCTTACGGAAGATGGACTTG...................... 26 0 1 3.00 3 0 1 0 2 0 0 0 0 0 0 0
..................................................................................................................................................................................................................TTACGGAAGATGGACTTGATATGTG............... 25 0 1 3.00 3 3 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................TACTCTTACGGAAGATGGACTTGA..................... 24 0 1 3.00 3 3 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................TCTTACGGAAGATGGACTTGATA................... 23 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................TCTTACGGAAGATGGACTTGA..................... 21 0 1 2.00 2 1 0 0 0 0 0 0 1 0 0 0
..........................................................................................................................................................ATGAACGTCACGAACTTATAGACCTTAAAT.................................................................. 30 0 1 2.00 2 0 0 2 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................TACGGAAGATGGACTTGATATGTGG.............. 25 0 1 2.00 2 1 0 1 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................TTACGGAAGATGGACTTGATATGTGG.............. 26 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0
.........................................TGGGAACTATAAAAGCTAGAAATG......................................................................................................................................................................................... 24 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................TGGTACTCTTACGGAAGATGGACT........................ 24 0 1 2.00 2 0 0 0 0 2 0 0 0 0 0 0
.............................................................................................................................................................................................................TACTCTTACGGAAGATGGACTTGAT.................... 25 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................GAAGATGGACTTGATATGTGGGGG........... 24 0 1 2.00 2 0 0 0 0 0 2 0 0 0 0 0
..............................................................................................................................................................................................................ACTCTTACGGAAGATGGACTTGATA................... 25 0 1 2.00 2 1 0 0 0 1 0 0 0 0 0 0
............................................................................................................................................................................................................................TGGACTTGATATGTGGGGGGTTGTGCC... 27 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................TTACGGAAGATGGACTTGATATGTGGG............. 27 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................GACTGGTACTCTTACGGAAGATGGACT........................ 27 0 1 2.00 2 1 0 0 0 1 0 0 0 0 0 0
..................................................................................................................................................................................................................TTACGGAAGATGGACTTGATAT.................. 22 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................TACGGAAGATGGACTTGATATGTGGGGGG.......... 29 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................TACTCTTACGGAAGATGGACTTGACATG................. 28 1 1 2.00 2 0 0 1 0 0 0 1 0 0 0 0
...............................................................................................................................................................................................................CTCTTACGGAAGATGGACTTGATATGTG............... 28 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................................ACGGAAGATGGACTTGATATGTGGGG............ 26 0 1 2.00 2 0 1 0 1 0 0 0 0 0 0 0
...................................................................................................................................................................................................................TACGGAAGATGGACTTGATATG................. 22 0 1 2.00 2 0 0 2 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................CTTACGGAAGATGGACTTGATATG................. 24 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................AGACTGGTACTCTTACGGAAGATGGACT........................ 28 0 1 2.00 2 1 0 0 1 0 0 0 0 0 0 0
............................................................................................................................................................................................................................TGGACTTGATATGTGGGGGGTTGTGCCT.. 28 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................TACTCTTACGGAAGATGGACTTGATAT.................. 27 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
......................................................................................................................TTATTTATTTCCATAAACA................................................................................................................. 19 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0
.................................................................................................................................................................................................................CTTACGGAAGATGGACTTGAT.................... 21 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0
....................................................................................................................................................................................................TCAGACTGGTACTCTTACGGA................................. 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................TTACGGAAGATGGACTTGATA................... 21 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0
.................................................................................................................................................................................................................CTTACGGAAGATGGACTT....................... 18 0 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0
....................................................................................................................................................................................................................ACGGAAGATGGACTTGATATGTGGGGGG.......... 28 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................TGAACGTCACGAACTTATAGACCT....................................................................... 24 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0
....................................................................................................................................................................................................CAAGACTGGTACTCTTACGGAAGATGG........................... 27 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................................TGATATGTGGGGGGTTGTGCCC.. 22 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 1
.....................................................................................................................................................TTAAAATGAACGTCACGAACT................................................................................ 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................................TGGACTTGATATGTGGGGGGTTG....... 23 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................TACTCTTACGGAAGATGGACTTGATATGT................ 29 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................CGGAAGATGGACTTGATATGTGGGGGGT......... 28 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................TGGTACTCTTACGGAAGATGGACTTGAA.................... 28 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................TTGTATCTTTATTTCAGACTGGG............................................ 23 1 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0
..............................................................................................................................................................................................................ACTCTTACGCAAGATGGACTTGATATG................. 27 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................TACTCTTACGGAAGATGGACTTGATAA.................. 27 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................TACTCTTACGGAAGATGGACTTGATATGTG............... 30 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................TCTTACGGAAGATGGACTTGATATGT................ 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................TTACAGAAGATGGACTTGATATGTG............... 25 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................CTTACGGAAGATGGACTTGACATGTGG.............. 27 1 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0
..........................................................................................................................................................................................................TGGTACTCTTACGGAAGA.............................. 18 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0
................................................................................................................................................................................................................TCTTACGGAAGATGGACTTGATATGTGA.............. 28 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................................TGGACTTGATATGTGGGGGGTTGTA..... 25 1 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0
........................................................................................................................................................................................................ACTGGTACTCTTACGGAAGATGGACT........................ 26 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................TTTCAGACTGGTACTCTTACGGAAGA.............................. 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.........................................................TAGAAATGTACTCGCTTATAGA........................................................................................................................................................................... 22 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
......................................................................................................................................................TAAAATGAACGTCACGAACTTAAAAA.......................................................................... 26 2 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................................AAGATGGACTTGATATGTGGGGGGT......... 25 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................TGGTACTCTTACGGAAGATGGA.......................... 22 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0
...............................................................................................................................................................................................TTATTTCAGACTGGTACTCTTACGGA................................. 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................CAAGACTGGTACTCTTACGGAAGATGGAC......................... 29 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................TGGTATTCTTACGGAAGATGGACTTGA..................... 27 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................TTTACGGAAGATGGACTTGATATG................. 24 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.TTTCTATTATGTCCGCCTGTTCGTACGGA............................................................................................................................................................................................................................ 29 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................ACAAGACTGGTACTCTTACGGAAGATG............................ 27 3 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
....................................................AAAGCTAGAAATGTACT..................................................................................................................................................................................... 17 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0
........................................................................................................................................................................................................................AAGATGGACTTGATATGTGGGGG........... 23 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
.................................................ATAAAAGCTAGAAATGTACTCGC.................................................................................................................................................................................. 23 0 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0
...................................TGATCCTGGGAACTATAAAA................................................................................................................................................................................................... 20 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0
.................................................................................................................................................................................................................CTGACGGAAGATGGACTTGATATG................. 24 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................AGATGGACTTGATATGTGGGGGGTTG....... 26 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................ACTCTTACGGAAGATGGACTTGAT.................... 24 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................CTCTTACGGAAGATGGACTTGATATGT................ 27 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................GTCTTACGGAAGATGGACTTGATATG................. 26 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
......................................TCCTGGGAACTATAAAAGCTAGAAA........................................................................................................................................................................................... 25 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0
..............................................................................................................................................................................................................ACTCTTACGGAAGATGGACTT....................... 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................TCAGACTGGTACTCTTACGGAAGA.............................. 24 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................TCTTACGGAAGATGGACTTGACATG................. 25 1 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0
............................................................................................................................................................................................................................TGGACTTGACATGTG............... 15 1 8 0.75 6 0 0 0 0 0 0 0 6 0 0 0
..............................................................................................................................................................................................................................GACTACATATGTTGGGGGTTG....... 21 3 2 0.50 1 0 0 0 0 1 0 0 0 0 0 0
..................................................................................................................................................TTATTAAAAAGAACGTCTCGAAC................................................................................. 23 2 2 0.50 1 0 0 0 1 0 0 0 0 0 0 0
................................................................................................................................................................................................................................CTTGATTTGTGGGTGGTGGTGC.... 22 3 5 0.20 1 0 0 0 0 0 0 0 0 0 1 0
............................................................................................................................................................................................................................TGGACTTGACATGTGCG............. 17 2 17 0.06 1 0 0 0 0 0 0 0 1 0 0 0
....................................................................................................GTTAAATAATTTAAAAAA.................................................................................................................................... 18 1 18 0.06 1 0 0 0 0 0 0 1 0 0 0 0
...................................................................................TGAGAAAATATTTAATAATTAAA................................................................................................................................................ 23 3 19 0.05 1 1 0 0 0 0 0 0 0 0 0 0

Anti-sense strand reads

TAAAGATAATACAGGCGGACAAGCATGCCTGCAGTACTAGGACCCTTGATATTTTCGATCTTTACATGAGCGAATATCTATAAAGTATTTTATTAATTATTAATTTATTAAATTTTTTAATAAATAAAGGTATTTGTTATATAGGAAATAATTTTACTTGCAGTGCTTGAATATCTGGAATTTAACATAGAAATAAAGTCTGACCATGAGAATGCCTTCTACCTGAACTATACACCCCCCAACACGGGTT
******************************************************************...(((((((..(((((..........)))))..))))))).........................********************************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553488
RT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
 SRR553487
NRT_0-2 hours eggs
 SRR553486
Makindu_3 day-old ovaries
...........................CCTGCAGTACTAGGACCCTTGATA....................................................................................................................................................................................................... 24 0 1 2.00 2 1 1 0 0
..........................GCCTGCATTTCTAGGACCGTT........................................................................................................................................................................................................... 21 3 1 1.00 1 0 0 1 0
........................ATGCCTGCAGTACTAGGACCCTTGATA....................................................................................................................................................................................................... 27 0 1 1.00 1 1 0 0 0
..................................................................................................................................................................................................AAAGTCTGATCATGA......................................... 15 1 3 0.33 1 0 1 0 0
...AGATAATACAGGAGAAC...................................................................................................................................................................................................................................... 17 2 18 0.17 3 0 0 0 3
.............................TGCAGTACTCGAACCCT............................................................................................................................................................................................................ 17 2 8 0.13 1 1 0 0 0
..AAGATAATACAGGAGAACC..................................................................................................................................................................................................................................... 19 3 20 0.10 2 0 0 0 2
...................................................................................................................................................ATAAATTTGCTTGCAGTCC.................................................................................... 19 3 20 0.05 1 0 0 1 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 4:114037-114286 + dsi_4917 ATT-TCTATTATGTCCGCCTGT--------TCGTACGGACGTCATGATCCTGGGAACTATAAAAGCTAGAAATGTA-----------------CT----------CGCTTATAGATATTTCATAAAAT------AATTAATAATTAAATAATT-----TA--AAA----------------------AATTATTTATTTCCATAAACAATATATCCTTT-ATTAAAA------------------------TGAACGTCACGAA--------CTTATAGACCT-------TAAAT-TGT-ATCTTTA--TTTCAGACTGGTACTCTTACGGAAGATGGACTTGATATGTGGGGGGTTGTGCCCAA
droSec2 scaffold_52:104936-105178 + dse_1423 ATT-TCTATTATGTCCGCCTGT--------TCGTACGGACGTCATGATCCTGGGAACTATAAAAGCTAGAAATGTA-----------------CT----------CGCTTATAGATATTTCATAA-------------AATAATTAAATAATT-----AA--AAA----------------------AATTATTTATTTCCATAAACAATATATCCTTT-ATTAAAA------------------------TGAACGTCACGAA--------CTTATAGACCT-------TAAAT-TGT-ATCTTTA--TTTCAGACTGGTACTCTTACGGAAGATGGACTTGATATGTGGGGGGTTGTGCCCAA
dm3 chr4:160716-160945 + ATT-TATATTAAGCCCTTCTGT--------TCGTACGGACGTCATGATCCTGGGAATTATAAAAGCTAGAAATGTA-----------------CT----------G---------------------------------------------------------------------TTAGGCATGCAT--AAGTTTATTTGCATAAACAATATATCATTT-ATTAAAATGAACTTAAT-TTATAC---------ACCAC------CATATACAAAATAAAACCT-------TAAAT-TGT-TACTTTA--TTTCAGACTGGTACTCTTACGGAAGATGGACTTGACATGTGGGGTGTTGTGCCCAA
droEre2 scaffold_4512:1164013-1164149 - TAA-AA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAAATGTATTTGGATAATCACTATATCCGTTCATTAAAA------------------------TTAACAT----AA--------TTTATATACAT-------TAAATTTTT-TACTTTA--TTTCAGACTGGTACTCTTACTGAAGATGGACTTGATATGTGGGGTGTTGTGCCCAA
droYak3 4:132162-132330 + TAA-AAT-------------------------------------------------------------------------------------------------------------------------------ATTTAATAATTCTATTATTTTACTAATG---AGG-----------------AT--AATTCAATTTAGATAATCACTATATTATTT-AT----A------------------------TAATCAC------CATATACACATATATACAT-------TTAAT-TAT-TACTTTA--TTCCAGACTGGTACTCTTACTGAAGATGGACTTGATATGTGGGGTGTTGTGCCCAA
droEug1 scf7180000406964:99715-99784 + AAA-TC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TT-TACTTTC--TTTCAGACTGGTACTCTAACTGAAGATGGACTTGATATGTGGGGTGTAGTGCCCAA
droBia1 scf7180000301744:14670-14785 - CGATCTAGCCATGTCCGTCTGT--------CCGTATGAACGCTGAGATCTCGGAAACTATAAAACCTATAAAAGTCAAACTTTTTTAACGTTTCA----------CGCTC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAAATGGTTAAAACGCTT-----------AAATA
droTak1 scf7180000412778:11113-11275 - TCG-TAA----------------------------------------------------------------------------------------------------------------------------------------------AATT-----AA----------TTAA-----------AT--TAGTTTAAATACTATTATAATTCGA---------------------AACATTTTTAAATAAATGAACTT------TGGGTTTATATATATGCACTAATTAATTA-TTCAT-TACATTA--TTTCAGACTGGAACACTCACAGAAGATGGACTTGATATGTGGGGAGTTGTGCCCAA
droEle1 scf7180000486764:41473-41718 - AAT-CTAGCCATGTCCGTCTGTTTGTCCGTCTGTATGAACATCGAGATCTCGGAAACTATAAAAGCTAAAGATTTC-----------------GGACTTGGTATGCAGATTCTAGTAGTTCCTAGGCTAGTTATTTGTTATTATCGTAAAATT-----AA--ATA----------------------AATGGTCAATTTGCTAAAATACTTTAA---------------------GG-GTATTTATTAAAGTACACATAGCAAA--------TCTACATAAAT-------TTGTT-TTTAATGTTTT--TTCCAGTAAATTACTTTTAAAGGA--------------------------------
droRho1 scf7180000762854:9843-9998 + AAA-GC--------------------------------------------------------------------------------------------------------------------------------ATTTAAAAATCAAATG---------------CGGTTGAAAAG-----------AAAGATGAATTTTTATGAAC-------------------------TATTC-ATATAC---------AATAT------AATATACACA--------CTTTTTATTTA-T-TTA-TTCATTT--TTTCAGACTGGTACTCTTACTGAAGATGGACTGGATATGTGGGGGGTTGTGCCAAA
droFic1 scf7180000454086:219976-220031 - ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTCAGACTGGTACCCTCACTGAAGATGGACTAGATATGTGGGGGGTGGTTCCAAA
droKik1 scf7180000302252:13804-13871 - ATT-TTG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATTAC--TTATAGACTGGGACCCTTACCGAAGATGGTCTAGATATGTGGGGCGTTTTACCAAA
droAna3 scaffold_13010:386053-386144 - AAT-TTATA-------------------------------------------------------------------------------------------------------------------------------------------------------------GGTTTAAAATTAGTTAT------------------------------------------------------------------------------------------------------------------GC-AATTTTATATTTTAGACAGGAACACTTACCGAAGATGGCCTTGACATGTGGGGTGTTGTTCCAAA
droBip1 scf7180000395600:14314-14382 + AAC-TA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T-TCTTATA--TTTTAGACAGGAACACTTACCGAAGATGGGCTTGATATGTGGGGTGTTGTTCCAAA
dp5 Unknown_group_15:54501-54508 + G---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCCCTAA
droPer2 scaffold_51:28829-28885 + A--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTCAGACTGGTACCTTAACGGAGGATGGGCTGGATATGTGGGGGGTGGTCCCTAA
droWil2 scf2_1100000004943:1064554-1064632 - GAA-TTCAT------------------------------------------------------------------------------------------------------------------------------------AA-------------------------------------------------------------------------------------------------------------------------------------------C-------TAAAT-CG----TTTAT--TTTTAGACCGGGACTCTTACTGAAGATGGATTGGATATGTGGGGAGTAGTGCCAAA
droVir3 scaffold_13052:1379658-1379752 - AAA-ATAAA-------------------------------------------------------------------------------------------------------------------------------------------------------------TGTTAAGG------------------------------------------------------------------------------------------------------------CTTTAT--TCAATTATT-TCCATTT-TATTCAGACTGGAACCTTAACGGAGGATGGCCTAGACATGTGGGGTGTCGTTCCAAA
droMoj3 scaffold_6498:1774025-1774117 - GTT-ATGAA-------------------------------------------------------------AATGTA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTTTTTTAAGA-TTATT-TTTTGTT--GTGCAGACTGGAACTTTGACAGAGGATGGTTTGGATATGTGGGGCGTTGTACCAAA
droGri2 scaffold_14822:400760-400822 - ATT-TT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AA--TTATAGACTGGCACTTTAACGGAGGATGGACTCGATATGTGGGGTGTGGTGCCCAA

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
ATT-TCTATTATGTCCGCCTGT--------TCGTACGGACGTCATGATCCTGGGAACTATAAAAGCTAGAAATGTA-----------------CT----------CGCTTATAGATATTTCATAAAAT------AATTAATAATTAAATAATT-----TA--AAA----------------------AATTATTTATTTCCATAAACAATATATCCTTT-ATTAAAA------------------------TGAACGTCACGAA--------CTTATAGACCT-------TAAAT-TGT-ATCTTTA--TTTCAGACTGGTACTCTTACGGAAGATGGACTTGATATGTGGGGGGTTGTGCCCAASizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
...................................................................................................................................................................................................................................................................................................................................TCTTACGGAAGATGGACTTGATATG.................25168.00680000005113001012000
.............................................................................................................................................................................................................................................................................................................................TGGTACTCTTACGGAAGATGGACTTGA.....................27147.00470000000000101531000
................................................................................................................................................................................................................................................................................................................................TACTCTTACGGAAGATGGACTTGATATG.................28123.0023000000166000010000
................................................................................................................................................................................................................................................................................................................................TACTCTTACGGAAGATGGACTTGATA...................26117.0017000000140210000000
......................................................................................................................................................................................................................................................................................................................................TACGGAAGATGGACTTGATATGTGGGG............27113.001300000040100008000
......................................................................................................................................................................................................................................................................................................................................TACGGAAGATGGACTTGATATGTG...............24112.001200001082001000000
...................................................................................................................................................................................................................................................................................................................................TCTTACGGAAGATGGACTTGATATGTG...............2719.00900000062001000000
......................................................................................................................................................................................................................................................................................................................................TACGGAAGATGGACTTGATATGTGGG.............2618.00800000010000025000
.....................................................................................................................................................................................................................................................................................................................................TTACGGAAGATGGACTTGATATG.................2318.00800000053000000000
.............................................................................................................................................................................................................................................................................................................................TGGTACTCTTACGGAAGATGGACTTGATA...................2916.00600000010000005000
.............................................................................................................................................................................................................................................................................................................................TGGTACTCTTACGGAAGATGGACTT.......................2516.00600000000004011000
...............................................................................................................................................................................................................................................................................................................................................TGGACTTGATATGTGGGGGGTTGTGC....2616.00600000042000000000
.....................................................................................................................................................................................................................................................................................................................................TTACGGAAGATGGACTTGATATGT................2416.00600100050000000000
..................................................TGGGAACTATAAAAGCTAGAAATGTA-----------------CT----------....................................................................................................................................................................................................................................................................2815.00500000023000000000
........................................................................................................................................................................................................................................................................................................................................CGGAAGATGGACTTGATATGTGGGGG...........2615.00500000001000013000
.............................................................................................................................................................................................................................................................................................................................TGGTACTCTTACGGAAGATGGACTTGAT....................2815.00500000000000005000
......................................................................................................................................................................................................................................................................................................................................TACGGAAGATGGACTTGATATGTGGGGG...........2815.00500000010000004000
......................................................................................................................................................................................................................................................................................................................................TACGGAAGATGGACTTGATATGT................2314.00400000040000000000
....................................................................................................................................................................................................................................................................................................................................CTTACGGAAGATGGACTTGATATGTG...............2614.00400000031000000000
......................................................................................................................................................................................................................................................................................................................................TACGGAAGATGGACTTGATATGTGGGGGGT.........3013.00300000030000000000
........................................................................................................................................................................................................................................................................................................................................CGGAAGATGGACTTGATATGTGGGG............2513.00300000000000003000
..................................................................................................................................................................................................................................................................................................................................CTCTTACGGAAGATGGACTTGATATG.................2613.00300000030000000000
..................................................................................................................................................................................................................................................................................................................................CTCTTACGGAAGATGGAC.........................1813.00300300000000000000
.............................................................................................................................................................................................................................................................................................................................TGGTACTCTTACGGAAGATGGACTTG......................2613.00300000000000021000
.....................................................................................................................................................................................................................................................................................................................................TTACGGAAGATGGACTTGATATGTG...............2513.00300000030000000000
................................................................................................................................................................................................................................................................................................................................TACTCTTACGGAAGATGGACTTGA.....................2413.00300000030000000000
...................................................................................................................................................................................................................................................................................................................................TCTTACGGAAGATGGACTTGATA...................2312.00200000020000000000
...................................................................................................................................................................................................................................................................................................................................TCTTACGGAAGATGGACTTGA.....................2112.00200000010010000000
..................................................................................................................................................................................................................................A------------------------TGAACGTCACGAA--------CTTATAGACCT-------TAAAT-.....................................................................3012.00200000002000000000
......................................................................................................................................................................................................................................................................................................................................TACGGAAGATGGACTTGATATGTGG..............2512.00200000011000000000
.....................................................................................................................................................................................................................................................................................................................................TTACGGAAGATGGACTTGATATGTGG..............2612.00200000020000000000
..................................................TGGGAACTATAAAAGCTAGAAATG...................................................................................................................................................................................................................................................................................................2412.00200000020000000000
.............................................................................................................................................................................................................................................................................................................................TGGTACTCTTACGGAAGATGGACT........................2412.00200000000002000000
................................................................................................................................................................................................................................................................................................................................TACTCTTACGGAAGATGGACTTGAT....................2512.00200000020000000000
..........................................................................................................................................................................................................................................................................................................................................GAAGATGGACTTGATATGTGGGGG...........2412.00200200000000000000
.................................................................................................................................................................................................................................................................................................................................ACTCTTACGGAAGATGGACTTGATA...................2512.00200000010001000000
...............................................................................................................................................................................................................................................................................................................................................TGGACTTGATATGTGGGGGGTTGTGCC...2712.00200000020000000000
.....................................................................................................................................................................................................................................................................................................................................TTACGGAAGATGGACTTGATATGTGGG.............2712.00200000020000000000
..........................................................................................................................................................................................................................................................................................................................GACTGGTACTCTTACGGAAGATGGACT........................2712.00200000010001000000
.....................................................................................................................................................................................................................................................................................................................................TTACGGAAGATGGACTTGATAT..................2212.00200000020000000000
......................................................................................................................................................................................................................................................................................................................................TACGGAAGATGGACTTGATATGTGGGGGG..........2912.00200000020000000000
..................................................................................................................................................................................................................................................................................................................................CTCTTACGGAAGATGGACTTGATATGTG...............2812.00200000020000000000
.......................................................................................................................................................................................................................................................................................................................................ACGGAAGATGGACTTGATATGTGGGG............2612.00200000000000011000
......................................................................................................................................................................................................................................................................................................................................TACGGAAGATGGACTTGATATG.................2212.00200000002000000000
....................................................................................................................................................................................................................................................................................................................................CTTACGGAAGATGGACTTGATATG.................2412.00200000020000000000
.........................................................................................................................................................................................................................................................................................................................AGACTGGTACTCTTACGGAAGATGGACT........................2812.00200000010000010000
...............................................................................................................................................................................................................................................................................................................................................TGGACTTGATATGTGGGGGGTTGTGCCT..2811.00100000010000000000
................................................................................................................................................................................................................................................................................................................................TACTCTTACGGAAGATGGACTTGATAT..................2711.00100000001000000000
.............................................................................................................................................................................................TTATTTATTTCCATAAACA.............................................................................................................................................................1911.00100001000000000000
....................................................................................................................................................................................................................................................................................................................................CTTACGGAAGATGGACTTGAT....................2111.00100000000100000000
.......................................................................................................................................................................................................................................................................................................................TCAGACTGGTACTCTTACGGA.................................2111.00100000010000000000
.....................................................................................................................................................................................................................................................................................................................................TTACGGAAGATGGACTTGATA...................2111.00100000000001000000
....................................................................................................................................................................................................................................................................................................................................CTTACGGAAGATGGACTT.......................1811.00100010000000000000
.......................................................................................................................................................................................................................................................................................................................................ACGGAAGATGGACTTGATATGTGGGGGG..........2811.00100000010000000000
...........................................................................................................................................................................................................................................................TGAACGTCACGAA--------CTTATAGACCT-------...........................................................................2411.00100000000010000000
.....................................................................................................................................................................................................................................................................................................................................................TGATATGTGGGGGGTTGTGCCC..2211.00100000000000100000
.............................................................................................................................................................................................................................TTAAAA------------------------TGAACGTCACGAA--------CT...........................................................................................2111.00100000010000000000
...............................................................................................................................................................................................................................................................................................................................................TGGACTTGATATGTGGGGGGTTG.......2311.00100000010000000000
................................................................................................................................................................................................................................................................................................................................TACTCTTACGGAAGATGGACTTGATATGT................2911.00100000001000000000
........................................................................................................................................................................................................................................................................................................................................CGGAAGATGGACTTGATATGTGGGGGGT.........2811.00100000001000000000
.............................................................................................................................................................................................................................................................................................................................TGGTACTCTTACGGAAGATGGACTTGAA....................2811.00100000000000001000
......................................................................................................................................................................................................................................................................................................T-TGT-ATCTTTA--TTTCAGACTGGG............................................2311.00100100000000000000
................................................................................................................................................................................................................................................................................................................................TACTCTTACGGAAGATGGACTTGATAA..................2711.00100000010000000000
................................................................................................................................................................................................................................................................................................................................TACTCTTACGGAAGATGGACTTGATATGTG...............3011.00100000010000000000
...................................................................................................................................................................................................................................................................................................................................TCTTACGGAAGATGGACTTGATATGT................2611.00100000010000000000
.............................................................................................................................................................................................................................................................................................................................TGGTACTCTTACGGAAGA..............................1811.00100000000001000000
...................................................................................................................................................................................................................................................................................................................................TCTTACGGAAGATGGACTTGATATGTGA..............2811.00100000000000001000
...............................................................................................................................................................................................................................................................................................................................................TGGACTTGATATGTGGGGGGTTGTA.....2511.00100000000000010000
...........................................................................................................................................................................................................................................................................................................................ACTGGTACTCTTACGGAAGATGGACT........................2611.00100000000000001000
.....................................................................................................................................................................................................................................................................................................................TTTCAGACTGGTACTCTTACGGAAGA..............................2611.00100000010000000000
..................................................................TAGAAATGTA-----------------CT----------CGCTTATAGA..........................................................................................................................................................................................................................................................2211.00100000001000000000
...........................................................................................................................................................................................................................................................................................................................................AAGATGGACTTGATATGTGGGGGGT.........2511.00100000001000000000
.............................................................................................................................................................................................................................................................................................................................TGGTACTCTTACGGAAGATGGA..........................2211.00100000000001000000
................................................................................................................................................................................................................................................................................................................TTA--TTTCAGACTGGTACTCTTACGGA.................................2611.00100000010000000000
.TT-TCTATTATGTCCGCCTGT--------TCGTACGGA......................................................................................................................................................................................................................................................................................................................................2911.00100000001000000000
.............................................................AAAGCTAGAAATGTA-----------------CT----------....................................................................................................................................................................................................................................................................1711.00100000000001000000
...........................................................................................................................................................................................................................................................................................................................................AAGATGGACTTGATATGTGGGGG...........2311.00100000000000001000
..........................................................ATAAAAGCTAGAAATGTA-----------------CT----------CGC.................................................................................................................................................................................................................................................................2311.00100010000000000000
............................................TGATCCTGGGAACTATAAAA.............................................................................................................................................................................................................................................................................................................2011.00100001000000000000
............................................................................................................................................................................................................................................................................................................................................AGATGGACTTGATATGTGGGGGGTTG.......2611.00100000000000001000
.................................................................................................................................................................................................................................................................................................................................ACTCTTACGGAAGATGGACTTGAT....................2411.00100000010000000000
..................................................................................................................................................................................................................................................................................................................................CTCTTACGGAAGATGGACTTGATATGT................2711.00100000010000000000
...............................................TCCTGGGAACTATAAAAGCTAGAAA.....................................................................................................................................................................................................................................................................................................2511.00100000000000010000
.................................................................................................................................................................................................................................................................................................................................ACTCTTACGGAAGATGGACTT.......................2111.00100000000000001000
.......................................................................................................................................................................................................................................................................................................................TCAGACTGGTACTCTTACGGAAGA..............................2411.00100000001000000000
droSec2
ATT-TCTATTATGTCCGCCTGT--------TCGTACGGACGTCATGATCCTGGGAACTATAAAAGCTAGAAATGTA-----------------CT----------CGCTTATAGATATTTCATAA-------------AATAATTAAATAATT-----AA--AAA----------------------AATTATTTATTTCCATAAACAATATATCCTTT-ATTAAAA------------------------TGAACGTCACGAA--------CTTATAGACCT-------TAAAT-TGT-ATCTTTA--TTTCAGACTGGTACTCTTACGGAAGATGGACTTGATATGTGGGGGGTTGTGCCCAASizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
.................................................................................................................................................................................................................................................................................................................................ACTCTTACGGAAGATGGACTTG......................2211.0010010
....................................................................................................................................................................................................................................................................................................................................CTTACGGAAGATGGACTTGAT....................2111.0010100
............................................................................................................................................................................................................................................................................................................................................AGATGGACTTGATATGTGGGGG...........2211.0010100
.................................................................................................................................................................................................................................................................................................................................ACTCTTACGGAAGATGGACT........................2011.0010010
......................................................................................................................................................................................................................................................................................................................................................GATATGTGGGGGGTTGTGCCCA.2211.0010010
.....................................................................AAATGTA-----------------CT----------CGCTTATAG...........................................................................................................................................................................................................................................................1811.0010010
.....................................GACGTCATGATCCTGGGAACT...................................................................................................................................................................................................................................................................................................................2111.0011000
....................................................................................................................................................................................................................................................................................................................................CTTACGGAAGATGGACTT.......................1811.0010010
.................................................................................................................................................................................................................................................................................................................................ACTCTTACGGAAGATGGACTT.......................2111.0010100
...................................................................................................................................................................................................................................................................................................................................TCTTACGGAAGATGGACTTGATA...................2311.0010100
.............................................................................................................................................................................................................................................................................................................................................GATGGACTTGATATGTGGGGG...........2111.0010100
dm3
ATT-TATATTAAGCCCTTCTGT--------TCGTACGGACGTCATGATCCTGGGAATTATAAAAGCTAGAAATGTA-----------------CT----------G---------------------------------------------------------------------TTAGGCATGCAT--AAGTTTATTTGCATAAACAATATATCATTT-ATTAAAATGAACTTAAT-TTATAC---------ACCAC------CATATACAAAATAAAACCT-------TAAAT-TGT-TACTTTA--TTTCAGACTGGTACTCTTACGGAAGATGGACTTGACATGTGGGGTGTTGTGCCCAASizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
.............................................................................................................................................................................................................................................................................................................................................GATGGACTTGACATGTGGGGTGTTG.......251446.0044600000000000000000000030100000000000002003401300401000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002500053001000000000000000000000000000000000526000002120000205000020000902510501050000000000000000000000000000000000000000000000000000000000000000000041404700004526700000011010101232671463000000
................................................................................................................................................................................................................................................................................................................................TACTCTTACGGAAGATGGACTTGACA...................261397.003970000000000000000000000000000000000000130220300130001000001000000000000000000023390000000000000001000000000000010000000000000000000002131207000000011130401600000000000000000000000000000000011030000000221102000204518000201243061018536000000000000100000000000000000000000000000000000000000000000000000032601900009520010000000000024762400000
................................................................................................................................................................................................................................................................................................................................TACTCTTACGGAAGATGGACTTGACATG.................281238.00238000000000000000000000120000000000000171051030021130110000100000000000000000001131000000000000000000000000000000000000000000000000000120502010000002311010010000000000000000000000000000000000060050000000000204071831000302110040303000000000000000000000000000000000000000000000000000000000000000001235602600007000000000000000012851600000
......................................................................................................................................................................................................................................................................................................................................TACGGAAGATGGACTTGACATGTGGGG............271215.0021500000000000000000000001000000000000010000001000000100000010000000000000000000101100010000000000000000000000000000000000000000000004200011000000000202001250000000000000000000000000000000000001100600070000001032152200010045030313100000000100000000000000000000000000000000000000000000000000000000000001200001010000002000000016226132700006
...................................................................................................................................................................................................................................................................................................................................TCTTACGGAAGATGGACTTGACATG.................251212.0021200000000000000000000000200000000000022003102300200021000000000000000000000000100000000000000000010000000000000000000000000000000000100090000000001001020200000000000000000000000000000000000103003001900000011026300009001301401370000000000000000000000000000000000000000000000000000000000000000021035014000087300100000000000811882000007
.............................................................................................................................................................................................................................................................................................................................................GATGGACTTGACATGTGGGGTGTTGT......261128.001280000000000000000000001000000000000000000100000050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001100000000000000000000000000000000000011000000003500200000100000600120102030000000000000000000000000000000000000000000000000000000000000000001025090000932110000000000002619131800000
..........................................................................................................................................................................................................................................................................................................................................GAAGATGGACTTGACATGTGGGGTGT.........261117.001170000000000000000000001000000000000000010010110020001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010020000000000000000000000000000000000000200000200000000000000000001110001000000000000000000000000000000000000000000000000000000000000000000101204090000111100000000000000111219141200000
..........................................................................................................................................................................................................................................................................................................................GACTGGTACTCTTACGGAAGATGGAC.........................261102.001020000000000000000000000000000000000001000010000130100000000000000000000000000001010000000000000000000000000000000000000000000000000000000000000000013012000000000000000000000000000000000000001000300110000001000000000200100000000000000000000000000000000000000000000000000000000000000000000000000321090000621000010100000005513121500000
................................................................................................................................................................................................................................................................................................................................TACTCTTACGGAAGATGGACTTGA.....................24180.008000000000000000000000000000000000000011000101000010000000010000000000000000000011201000000000000010000000000000101000000000000000000000000001000000000000060000000000000000000000000000000000101000010000000000004131000400310602030000000000000000000000000000000000000000000000000000000000001000001311050000240000000000000000010000000
..................................................................................................................................................................................................................................................................................................................................CTCTTACGGAAGATGGACTTGACATG.................26166.006600000000000000000000000000000000000000000000000000001000000000000000000000000110000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000201000000800000000402106000000000200010000000000000000000000000000000000000000000000000000000000000000001023030000431000010000000001121400000
...............................................................................................................................................................................................................................................................................................................................................TGGACTTGACATGTGGGGTGTTGTGC....26164.006400000000000000000000000000000000000000100100000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100030001000000000000000000000000000000001001000000100000000000000002100100000100000000000000000000000000000000000000000000000000000000000000000001350900007210000000000000043121000000
..........................................................................................................................................................................................................................................................................................................................GACTGGTACTCTTACGGAAGATGGACT........................27164.00640000000000000000000000000000000000000100100000010000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000001200000000000000000000000000000000000000012100100090000001000006000300100100000000000000000000000001000000000000000000000000000000000000000000010001060000110000000000000002344500002
...........................................................................................................................................................................................................................................................................................................................................AAGATGGACTTGACATGTGGGGTGT.........25153.005300000000000000000000010000000000000000001000002200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100100000000000000000000000000000000000000000000001500000000200000000001000000000000000000000000000000000000000000000000000000000000000000000000001200100004220000000000000013541100000
.............................................................................................................................................................................................................................................................................................................................................GATGGACTTGACATGTGG..............18152.005200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000041240500000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................GATGGACTTGACATGTGGGG............20152.0052000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000288112000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100001000000000000000000000
.............................................................................................................................................................................................................................................................................................................................TGGTACTCTTACGGAAGATGGACTT.......................25150.00500000000000000000000002000000000000000012100100110000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000101001000000000000000000000000000000000000000500000040000201010100000200410202010000000000000000000000000000000000000000000000000000000000000000000200000000102000000000000000000200004
.............................................................................................................................................................................................................................................................................................................................................GATGGACTTGACATGTGGGGTGT.........23149.004900000000000000000000000000000000000000010101000100000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000010000000200000000002000100000100000000000000000000000000000000000000000000000000000000000000000000010500005400000000000000001113600000
.....................................................................................................................................................................................................................................................................................................................................TTACGGAAGATGGACTTGACATGTGG..............26141.004100000000000000000000000000000000000000001000000000000000000000000000000000000101100000000000000000000000000000000000000000000000000000020000000000100000000000000000000000000000000000000000000000000000000010000000000000101020100000000000000000000000000000000000000000000000000000000000000000000010000004000100000000000002371000000
.....................................................................................................................................................................................................................................................................................................................................TTACGGAAGATGGACTTGACATG.................23137.00370000000000000000000000100000000000000001101000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000100002003000000000000000000000000000000000000000000000000000010000000000100200000000000000000000000000000000000000000000000000000000000000000000100101020000630000000000000002120100000
..............................................................................................................................................................................................................................................................................................................................................ATGGACTTGACATGTGGGG............19136.003600000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000032010100000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................TACGGAAGATGGACTTGACATGTGGG.............26136.00360000000000000000000000000000000000000000000000000001000000000000000000000000010000000000000000000000000000000000000000000000000000010002000000001000000040000000000000000000000000000000000000000000000000000000000000200100000010000000000000000000000000000000000000000000000000000000000000000000000020000214000000000000002231500000
.............................................................................................................................................................................................................................................................................................................................................GATGGACTTGACATGTGGG.............19136.0036000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000181013400000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................TTACGGAAGATGGACTTGACATGTGGG.............27133.00330000000000000000000000020000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001010000000000000000000000000000000000000000000000000000200000000000000100010000000000000000000000000000000000000000000000000000000000000000000000010000200000000010000003524600000
.................................................................................................................................................................................................................................................................................................................................ACTCTTACGGAAGATGGACTTGACATG.................27133.00330000000000000000000000000000000000000100000000010000000000000000000000000000003020000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000100000040000000000000000101210001000000000000000000000000000000000000000000000000000000000000000000000110020000311000000000000000012200000
...............................................................................................................................................................................................................................................................................................................................................TGGACTTGACATGTGGGGTGTTGTG.....25133.00330000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000003000000000000000000000000000000000000000000000000000000000000200000102020000000000000000000000000000000000000000000000000000000000000000000100050000440000000000000000131200000
.............................................................................................................................................................................................................................................................................................................................................GATGGACTTGACATGTGGGGTGTT........24132.00320000000000000000000001000000000000000000011000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100002000000000000000000000000000000000000000000003000200020000000000000102010000000000000000000000000000000000000000000000000000000000001000000001030000210100000000000001100400000
......................................................................................................................................................................................................................................................................................................................................TACGGAAGATGGACTTGACATGTGG..............25132.00320000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000100001000000000000000000000000000000000000000000000000000000000000000000000000130000000100000000000000000000000000000000000000000000000000000000000000000000000000101010000332000000000000000513400000
....................................................................................................................................................................................................................................................................................................................................CTTACGGAAGATGGACTTGACA...................22128.002800000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000026
.....................................................................................................................................................................................................................................................................................................................................TTACGGAAGATGGACTTGACATGTGGGG............28128.00280000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000100024000000000000000030000000000000000000000000000000000000000000000000000000047000000000000000001000000000000000000000000000000000000000000000000000000000000000000020000000000000000000002010000000
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droEre2
TAA-AA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAAATGTATTTGGATAATCACTATATCCGTTCATTAAAA------------------------TTAACAT----AA--------TTTATATACAT-------TAAATTTTT-TACTTTA--TTTCAGACTGGTACTCTTACTGAAGATGGACTTGATATGTGGGGTGTTGTGCCCAASizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
.............................................................................................................................................................................................................................................................................................................................................GATGGACTTGATATGTGGGGTGTT........2411.0010000100
....................................................................................................................................................................................................................................................................................................................................CTTACTGAAGATGGACTTG......................1911.0010001000
...................................................................................................................................................................................................................................................................................................................................TCTTACTGAAGATGGACTT.......................1911.0010000010
..................................................................................................................................................................................................................................................................................................................................CTCTTACTGAAGATGGACTT.......................2011.0010000010
......................................................................................................................................................................................................................................................................................................................................TACTGAAGATGGACTTGATATGTGGGG............2711.0011000000
..................................................................................................................................................................................................................................................................................................................................CTCTTACTGAAGATGGACTTGATATGT................2711.0010001000
.........................................................................................................................................................................................................................................................................................................................................TGAAGATGGACTTGATATGTGGGGT...........2511.0010000100
droYak3
TAA-AAT-------------------------------------------------------------------------------------------------------------------------------ATTTAATAATTCTATTATTTTACTAATG---AGG-----------------AT--AATTCAATTTAGATAATCACTATATTATTT-AT----A------------------------TAATCAC------CATATACACATATATACAT-------TTAAT-TAT-TACTTTA--TTCCAGACTGGTACTCTTACTGAAGATGGACTTGATATGTGGGGTGTTGTGCCCAASizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
......................................................................................................................................................................................................................................................................................................................................................GATATGTGGGGTGTTGTGCCC..2112.00201000010000
................................................................................................................................................................................................................................................................................................................................TACTCTTACTGAAGATGGACTTGATA...................2612.00202000000000
..........................................................................................................................................................................................................................................................................................................................................GAAGATGGACTTGATATGT................1911.00100100000000
.................................................................................................................................................................................................................................................................................................................................................GACTTGATATGTGGGGTGTT........2011.00100000010000
.............................................................................................................................................................................................................................................................................................................................................GATGGACTTGATATGTGGGGT...........2111.00100000010000
......................................................................................................................................................................................................................................................................................................................................................GATATGTGGGGTGTTGTGCC...2011.00100000010000
........................................................................................................................................................................................................................................................................................................................................................TATGTGGGGTGTTGTGCCCAA2111.00100000010000
....................................................................................................................................................................................................................................................................................................................................CTTACTGAAGATGGACTTG......................1911.00100000010000
......................................................................................................................................................................................................................................................................................................................................TACTGAAGATGGACTTGATATGTGG..............2511.00101000000000
............................................................................................................................................................................................................................................................................................................................................AGATGGACTTGATATGTGGG.............2011.00100010000000
...................................................................................................................................................................................................................................................................................................................................................CTTGATATGTGGGGTGTTG.......1911.00100000010000
...................................................................................................................................................................................................................................................................................................................................TCTTACTGAAGATGGACTTGATATG.................2511.00101000000000
............................................................................................................................................................................................................................................................................................................................................AGATGGACTTGATATGTGGGGTGT.........2411.00100000010000
..........................................................................................................................................................................................................................................................................................................................................GAAGATGGACTTGATATGTGGGG............2311.00100000010000
................................................................................................................................................................................................................................................................................................................................TACTCTTACTGAAGATGGACTTGATATG.................2811.00101000000000
.............................................................................................................................................................................................................................................................................................................................TGGTACTCTTACTGAAGATGGACT........................2411.00101000000000
................................................................................................................................................................................................................................................................................................................................TACTCTTACTGAAGATGGACTTG......................2311.00101000000000
..........................................................................................................................................................................................................................................................................................................................GACTGGTACTCTTACTGAAGATGGACT........................2711.00101000000000
......................................................................................................................................................................................................................................................................................................................................................GATATGTGGGGTGTTGTGC....1911.00100000100000
droEug1
AAA-TC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TT-TACTTTC--TTTCAGACTGGTACTCTAACTGAAGATGGACTTGATATGTGGGGTGTAGTGCCCAASizeHit CountTotal NormTotal
No Reads
droBia1
CGATCTAGCCATGTCCGTCTGT--------CCGTATGAACGCTGAGATCTCGGAAACTATAAAACCTATAAAAGTCAAACTTTTTTAACGTTTCA----------CGCTC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAAATGGTTAAAACGCTT-----------AAATASizeHit CountTotal NormTotal
No Reads
droTak1
TCG-TAA----------------------------------------------------------------------------------------------------------------------------------------------AATT-----AA----------TTAA-----------AT--TAGTTTAAATACTATTATAATTCGA---------------------AACATTTTTAAATAAATGAACTT------TGGGTTTATATATATGCACTAATTAATTA-TTCAT-TACATTA--TTTCAGACTGGAACACTCACAGAAGATGGACTTGATATGTGGGGAGTTGTGCCCAASizeHit CountTotal NormTotal
No Reads
droEle1
AAT-CTAGCCATGTCCGTCTGTTTGTCCGTCTGTATGAACATCGAGATCTCGGAAACTATAAAAGCTAAAGATTTC-----------------GGACTTGGTATGCAGATTCTAGTAGTTCCTAGGCTAGTTATTTGTTATTATCGTAAAATT-----AA--ATA----------------------AATGGTCAATTTGCTAAAATACTTTAA---------------------GG-GTATTTATTAAAGTACACATAGCAAA--------TCTACATAAAT-------TTGTT-TTTAATGTTTT--TTCCAGTAAATTACTTTTAAAGGA--------------------------------SizeHit CountTotal NormTotal
No Reads
droRho1
AAA-GC--------------------------------------------------------------------------------------------------------------------------------ATTTAAAAATCAAATG---------------CGGTTGAAAAG-----------AAAGATGAATTTTTATGAAC-------------------------TATTC-ATATAC---------AATAT------AATATACACA--------CTTTTTATTTA-T-TTA-TTCATTT--TTTCAGACTGGTACTCTTACTGAAGATGGACTGGATATGTGGGGGGTTGTGCCAAASizeHit CountTotal NormTotal
No Reads
droFic1
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTCAGACTGGTACCCTCACTGAAGATGGACTAGATATGTGGGGGGTGGTTCCAAASizeHit CountTotal NormTotal
No Reads
droKik1
ATT-TTG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATTAC--TTATAGACTGGGACCCTTACCGAAGATGGTCTAGATATGTGGGGCGTTTTACCAAASizeHit CountTotal NormTotal
No Reads
droAna3
AAT-TTATA-------------------------------------------------------------------------------------------------------------------------------------------------------------GGTTTAAAATTAGTTAT------------------------------------------------------------------------------------------------------------------GC-AATTTTATATTTTAGACAGGAACACTTACCGAAGATGGCCTTGACATGTGGGGTGTTGTTCCAAASizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
.............................................................................................................................................................................................................................................................................................................................................GATGGCCTTGACATGTGGGGT...........2114.004020011
.............................................................................................................................................................................................................................................................................................................................................GATGGCCTTGACATGTGGGGTGTTGT......2611.001000010
.........................................................................................................................................................................................................................................................................................................................AGACAGGAACACTTACCGAA................................2011.001100000
..........................................................................................................................................................................................................................................................................................................................GACAGGAACACTTACCGAAGAT.............................2211.001100000
..................................................................................................................................................................................................................................................................................................................................................CCTTGACATGTGGGGTGTTGT......2111.001000010
...............................................................................................................................................................................................................................................................................................................................................TGGCCTTGACATGTGGGGTGTT........2211.001100000
..............................................................................................................................................................................................................................................................................................................................................ATGGCCTTGACATGTGGGGT...........2011.001010000
................................................................................................................................................................................................................................................................................................................................................GGCCTTGACATGTGGGGTGTTG.......2211.001000010
..........................................................................................................................................................................................................................................................................................................................................GAAGATGGCCTTGACATGTGGGGT...........2411.001000100
.........................................................................................................................................................................................................................................................................................................................................................ATGTGGGGTGTTGTTCCAAA2011.001000001
................................................................................................................................................................................................................................................................................................................................AACACTTACCGAAGATGGCCTTGA.....................2411.001100000
..........................................................................................................................................................................................................................................................................................................................GACAGGAACACTTACCGAAGATGGCC.........................2611.001010000
droBip1
AAC-TA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T-TCTTATA--TTTTAGACAGGAACACTTACCGAAGATGGGCTTGATATGTGGGGTGTTGTTCCAAASizeHit CountTotal NormTotal
No Reads
dp5
G---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCCCTAASizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
No Reads
droPer2
A--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTCAGACTGGTACCTTAACGGAGGATGGGCTGGATATGTGGGGGGTGGTCCCTAASizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
.....................................................................................................................................................................................................................................................................................................................................TAACGGAGGATGGGCTGGATATGTG...............2511.001010000
...............................................................................................................................................................................................................................................................................................................................GTACCTTAACGGAGGATGG...........................1911.001000001
.....................................................................................................................................................................................................................................................................................................................................TAACGGAGGATGGGCTGGA.....................1911.001000001
droWil2
GAA-TTCAT------------------------------------------------------------------------------------------------------------------------------------AA-------------------------------------------------------------------------------------------------------------------------------------------C-------TAAAT-CG----TTTAT--TTTTAGACCGGGACTCTTACTGAAGATGGATTGGATATGTGGGGAGTAGTGCCAAASizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
.....................................................................................................................................................................................................................................................................................................................................................GGATATGTGGGGAGTAGT......1812.00200200
.........................................................................................................................................................................................................................................................................................................................................................ATGTGGGGAGTAGTGCCA..1812.00200020
.............................................................................................................................................................................................................................................................................................................................................GATGGATTGGATATGTGGGGAGT.........2311.00100100
.......................................................................................................................................................................................................................................................................................................................................................ATATGTGGGGAGTAGTGC....1811.00100010
.............................................................................................................................................................................................................................................................................................................................................GATGGATTGGATATGTGG..............1811.00100010
.................................................................................................................................................................................................................................................................................................................................ACTCTTACTGAAGATGGATTG.......................2111.00100010
............................................................................................................................................................................................................................................................................................................................................AGATGGATTGGATATGTGGGGAGT.........2411.00100100
..........................................................................................................................................................................................................................................................................................................................................GAAGATGGATTGGATATGTGGGGA...........2411.00100100
.....................................................................................................................................................................................................................................................................................................................................TTACTGAAGATGGATTGC......................1811.00100010
.....................................................................................................................................................................................................................................................................................................................................TTACTGAAGATGGATTGGATATGTG...............2511.00100100
.....................................................................................................................................................................................................................................................................................................................................TTACTGAAGATGGATTGGAT....................2011.00100100
droVir3
AAA-ATAAA-------------------------------------------------------------------------------------------------------------------------------------------------------------TGTTAAGG------------------------------------------------------------------------------------------------------------CTTTAT--TCAATTATT-TCCATTT-TATTCAGACTGGAACCTTAACGGAGGATGGCCTAGACATGTGGGGTGTCGTTCCAAASizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
.................................................................................................................................................................................................................................................................................................................................ACCTTAACGGAGGATGGC..........................1812.002000000000020000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................GACTGGAACCTTAACGGAGGAT.............................2212.002001001000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................GGCCTAGACATGTGGGGTGTC........2112.002000000000000010000000000000000000000000000000000000000000001000
....................................................................................................................................................................................................................................................................................................................................TTAACGGAGGATGGCCTAGAC....................2111.001100000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................GGCCTAGACATGTGGGGT...........1811.001000000000000010000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................ACCTTAACGGAGGATGGCCTAGAC....................2411.001000000000001000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................CCTAGACATGTGGGGTGTC........1911.001000000000000000000000000000000000000000000000000000000000001000
.....................................................................................................................................................................................................................................................................................................................................................AGACATGTGGGGTGTCGTTCC...2111.001001000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................GACTGGAACCTTAACGGAGGATGG...........................2411.001000000000000000000000000000001000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................TTAACGGAGGATGGCCTAGACATGT................2511.001000000001000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................TGGAACCTTAACGGAGGAT.............................1911.001001000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................CCTAGACATGTGGGGTGTCGTTCCA..2511.001000000000000000000000000000000000000000000000000000000000001000
...............................................................................................................................................................................................................................................................................................................................GAACCTTAACGGAGGATGGC..........................2011.001000000000000000000000000000000000000000000000000000000000001000
................................................................................................................................................................................................................................................................................................................................AACCTTAACGGAGGATGGC..........................1911.001000000000000000000000000000000000000000000000000000000000001000
droMoj3
GTT-ATGAA-------------------------------------------------------------AATGTA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTTTTTTAAGA-TTATT-TTTTGTT--GTGCAGACTGGAACTTTGACAGAGGATGGTTTGGATATGTGGGGCGTTGTACCAAASizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
......................................................................................................................................................................................................................................................................................................................................GACAGAGGATGGTTTGGA.....................1811.001100000
.......................................................................................................................................................................................................................................................................................................................................................ATATGTGGGGCGTTGTACC...1911.001100000
..........................................................................................................................................................................................................................................................................................................................................GAGGATGGTTTGGATATGTGG..............2111.001000010
droGri2
ATT-TT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AA--TTATAGACTGGCACTTTAACGGAGGATGGACTCGATATGTGGGGTGTGGTGCCCAASizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads

Generated: 05/19/2015 at 03:50 PM