ID:

dsi_4915

 Coordinate:

3r:4137324-4137473 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-30.0 -30.0 -30.0

Flybase annnotation

five_prime_UTR [3r_4136752_4137839_+]; exon [3r_4136752_4137947_+]

No Repeatable elements found

Sense Strand Reads

##########################################################################################################################################################################################################################################################
AGCAGCAGCAACAACAACAAATGTAGCGCCGCCGCTCAGATCTCTTCGCCGCTTTGCTTTTGCGCAGAGAACCTCGGCGAATTGCTGCGAATTCGCCGCAGCTGTGTGTTTGGAAACACCTTGCTCCAATATTTTAACACCCCCCGCCCGCCGCCCCATCGTCGGAAATATCCGATTTTGCACGACCATCGCTGTTTCAGTCTCAGTTTCGGTTCGCTTCGTGCGCTTTCTGCTGCCCTGCAGCGGAAAA
********************************************************************......(((((....((((((.......)))))).((((..(((((..........))))).......))))........)))))...((..((((((....))))))..))..(((...)))..********************************************************* 		Read size # Mismatch Hit Count Total Norm Total M053
female body
 O001
Testis
 M024
male body		 M025
embryo
 O002
Head
 SRR618934
dsim w501 ovaries
 SRR553486
Makindu_3 day-old ovaries
 SRR553487
NRT_0-2 hours eggs
 SRR553488
RT_0-2 hours eggs
..............................GCCGCTCAGATCTCTTCGCC........................................................................................................................................................................................................ 20 0 1 1.00 1 0 0 0 1 0 0 0 0 0
.....................................................................................................................................................................AAATATCCGATTTTGCACGACCATCGCT......................................................... 28 0 1 1.00 1 1 0 0 0 0 0 0 0 0
.......................................................................................................................................................CGCCCCATCGTCGGAAATAT............................................................................... 20 0 1 1.00 1 0 0 1 0 0 0 0 0 0
....................................................................GAACCTCGGCGAATTGCTGC.................................................................................................................................................................. 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0
.......................................................................................................................................................CGCCCCATCGTCGGAAATA................................................................................ 19 0 1 1.00 1 0 1 0 0 0 0 0 0 0
....................................................................................................................................................................................................TCAGTCTCAGTTTCGGTTC................................... 19 0 1 1.00 1 0 1 0 0 0 0 0 0 0
....................................................................................................................................................................................CACGACCATCGCTGTTTCAG.................................................. 20 0 1 1.00 1 0 0 0 0 1 0 0 0 0
........................................................................................GAATTCGCCGCAGCTT.................................................................................................................................................. 16 1 5 0.20 1 0 0 0 0 0 1 0 0 0
.........................................................................................................................GGCTCCAATATTTTAAAA............................................................................................................... 18 2 9 0.11 1 0 0 0 0 0 0 1 0 0
....................................................TGTGCCTTTGCGCAGAGCAC.................................................................................................................................................................................. 20 3 9 0.11 1 0 0 0 0 0 1 0 0 0
...............................................................................................................................................CCGCCCGCCGGCCCCGCGTC....................................................................................... 20 3 15 0.07 1 0 0 0 0 0 0 0 1 0
................................................................................................................................................................................................................TCGGTTCTCTGCGTGCG......................... 17 2 19 0.05 1 0 0 0 0 0 0 0 0 1

Anti-sense strand reads

TCGTCGTCGTTGTTGTTGTTTACATCGCGGCGGCGAGTCTAGAGAAGCGGCGAAACGAAAACGCGTCTCTTGGAGCCGCTTAACGACGCTTAAGCGGCGTCGACACACAAACCTTTGTGGAACGAGGTTATAAAATTGTGGGGGGCGGGCGGCGGGGTAGCAGCCTTTATAGGCTAAAACGTGCTGGTAGCGACAAAGTCAGAGTCAAAGCCAAGCGAAGCACGCGAAAGACGACGGGACGTCGCCTTTT
*********************************************************......(((((....((((((.......)))))).((((..(((((..........))))).......))))........)))))...((..((((((....))))))..))..(((...)))..******************************************************************** 		Read size # Mismatch Hit Count Total Norm Total GSM343915
embryo
 M053
female body
 SRR618934
dsim w501 ovaries
 SRR902009
testis
 SRR553487
NRT_0-2 hours eggs
 M023
head
.........................................................................................................................................................GGGGTAGCAACCTCTATAGCCT........................................................................... 22 3 1 1.00 1 1 0 0 0 0 0
.........................................................................................................................................GTGAGGGGAGGGCGGCGGGGTC........................................................................................... 22 3 2 0.50 1 0 1 0 0 0 0
.....................................................................................................................................AATTGTATGGTGCGGGCGGCG................................................................................................ 21 3 3 0.33 1 0 0 0 1 0 0
...................................................................................................................................AAAATTGTGGGGAGCCGACGG.................................................................................................. 21 3 7 0.29 2 0 0 2 0 0 0
.......................................................CGAGAACGAGTCTCTTG.................................................................................................................................................................................. 17 2 14 0.07 1 0 0 1 0 0 0
............................................................................................................................................GGGGGGGGGCGGCGGG.............................................................................................. 16 1 16 0.06 1 0 0 0 0 1 0
..........................................................................................................................................TGGGGGGCGCGCCGCG................................................................................................ 16 2 18 0.06 1 0 0 0 0 1 0
.................................................................................................................................................................................................CAAAGTCTGAGCCAAAGC....................................... 18 2 20 0.05 1 0 0 0 0 0 1

Generated: 04/23/2015 at 08:40 PM