ID:

dsi_4912

 Coordinate:

3l:8261901-8262082 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-20.7 -20.7 -20.2

Flybase annnotation

intergenic

No Repeatable elements found

Sense Strand Reads

TCATCCATAATCATGCATTAGACTTAAGTTTGTGTATCATCTCGTGGGTGCTGGTAATCCCCCCGGATTGCCGGCACTAGCTGTCTTGCCTGTGGTGTGTAGTGTGCGTGGTGTGGTTGTGTGACTAACCCATCAATCGTTCTCCTGGAGTTTTTGAACTAATCCCAAAACTTTTCGTTTGTCTCCTGTGACGACTGAAGGCAAAACTGCCCGATTATAATCCAATCTCAAGCTTCCCCATCGACAAGGAAACCGATGAACGTGAACTAGAGGAATCAAGAT
********************************************************.......((.(((((((.(((..((......))..))).)).))))).)).((((..(((((....)))))..))))***************************************************************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR618934
dsim w501 ovaries
 SRR553486
Makindu_3 day-old ovaries
 M023
head
 M024
male body		 M025
embryo
 O002
Head
 SRR553487
NRT_0-2 hours eggs
 SRR553485
Chicharo_3 day-old ovaries
........................................................ATCCCCCCGGATTGCCGGC............................................................................................................................................................................................................... 19 0 1 2.00 2 0 0 0 1 1 0 0 0
.........................................................................................................................................................................................................................................................AAACCGATGAACGTGAACTA............. 20 0 1 1.00 1 0 1 0 0 0 0 0 0
......................................................................................................................................................................................................................................................................TGAACTAGAGGAATCAAGA. 19 0 1 1.00 1 1 0 0 0 0 0 0 0
......................................................................................................................................................................................................................................................AGGAAACCGATGAACGTGAACT.............. 22 0 1 1.00 1 0 0 1 0 0 0 0 0
...................................................................................................................GTTGTGTGACTAACCCAT..................................................................................................................................................... 18 0 1 1.00 1 0 0 0 0 0 1 0 0
................................................................................................................................................................................................................................................................TGAACGTGAACTAGAGGAATCAAGA. 25 0 1 1.00 1 0 1 0 0 0 0 0 0
...........................................................................................................................................................................TTTTCGTTTGTCTCCTGTGACGACT...................................................................................... 25 0 1 1.00 1 0 0 1 0 0 0 0 0
..................TAGACTTAAGTTTGT......................................................................................................................................................................................................................................................... 15 0 1 1.00 1 1 0 0 0 0 0 0 0
.............................................................................TAGCTGTCTTGCCAGTGGGGT........................................................................................................................................................................................ 21 2 1 1.00 1 1 0 0 0 0 0 0 0
...................................................................................................................................................................................................................................................................ACGTGAACTAGAGGAATC..... 18 0 1 1.00 1 1 0 0 0 0 0 0 0
.............................................................................TAGCTGTCTTGCCAGTGGT.......................................................................................................................................................................................... 19 1 4 0.50 2 2 0 0 0 0 0 0 0
....................................................................................................................................................................................................................................................................CGTGTACTAGAGGAACC..... 17 2 2 0.50 1 1 0 0 0 0 0 0 0
.............................................................................TAGCTGTCTTGCCAGTGTT.......................................................................................................................................................................................... 19 2 4 0.25 1 1 0 0 0 0 0 0 0
.............................................................................TAGCTGTCTTGCCAGTGGTC......................................................................................................................................................................................... 20 2 4 0.25 1 1 0 0 0 0 0 0 0
.............................................................................TAGCTGTCTTGCCGGT............................................................................................................................................................................................. 16 1 4 0.25 1 1 0 0 0 0 0 0 0
.............................................................................TAGCTGTCTTGCCAGTGGTA......................................................................................................................................................................................... 20 2 4 0.25 1 1 0 0 0 0 0 0 0
..............................TATGTATCCTCTCGGGGGT......................................................................................................................................................................................................................................... 19 3 8 0.25 2 0 2 0 0 0 0 0 0
.........................................................................GATCTAGCTGTCTTGCCAGTG............................................................................................................................................................................................ 21 3 5 0.20 1 1 0 0 0 0 0 0 0
..........................................................................................................CGTGGTGGGGTTGTAGGACT............................................................................................................................................................ 20 3 5 0.20 1 0 0 0 1 0 0 0 0
.............................................................................................................GGTGTTGTTGTGTGAC............................................................................................................................................................. 16 1 20 0.15 3 3 0 0 0 0 0 0 0
...................................................................................................................................................................................................................................TCAAGCTTCGCCATCGA...................................... 17 1 9 0.11 1 0 0 0 0 0 0 1 0
.............................................................................................................GGTGTTGTTGTGTGA.............................................................................................................................................................. 15 1 20 0.10 2 2 0 0 0 0 0 0 0
................................................................................................................................................................TATCCCAAAACTTTTCGATT...................................................................................................... 20 2 20 0.05 1 0 0 0 0 0 0 0 1

Anti-sense strand reads

AGTAGGTATTAGTACGTAATCTGAATTCAAACACATAGTAGAGCACCCACGACCATTAGGGGGGCCTAACGGCCGTGATCGACAGAACGGACACCACACATCACACGCACCACACCAACACACTGATTGGGTAGTTAGCAAGAGGACCTCAAAAACTTGATTAGGGTTTTGAAAAGCAAACAGAGGACACTGCTGACTTCCGTTTTGACGGGCTAATATTAGGTTAGAGTTCGAAGGGGTAGCTGTTCCTTTGGCTACTTGCACTTGATCTCCTTAGTTCTA
*****************************************************************************************************************************************************.......((.(((((((.(((..((......))..))).)).))))).)).((((..(((((....)))))..))))******************************************************** 		Read size # Mismatch Hit Count Total Norm Total M023
head
 SRR553487
NRT_0-2 hours eggs
 SRR553486
Makindu_3 day-old ovaries
 SRR618934
dsim w501 ovaries
 SRR553488
RT_0-2 hours eggs
................................................................................................................................................................................................................CGGGCTAATAATAGGTACGAG..................................................... 21 3 2 1.00 2 2 0 0 0 0
.............................................................................................................................................................................................CGGCTGACTTCCGTTT............................................................................. 16 1 2 0.50 1 0 1 0 0 0
.......................................................................................................................................................................................AGGACACTCCTGACTT................................................................................... 16 1 8 0.13 1 0 0 1 0 0
.........................................................AGGGGGGCATAATGGC................................................................................................................................................................................................................. 16 2 8 0.13 1 0 0 0 0 1
..........................................................................................................................................................................................ACCCTGCTGACTTCC................................................................................. 15 1 8 0.13 1 0 0 1 0 0
.................................................................................................................................................................................................................................AGAGATCGAAGGGGTTG........................................ 17 2 12 0.08 1 0 0 0 1 0
.........................................................................................................................................................................TGAAAAGCAAACAGT.................................................................................................. 15 1 20 0.05 1 0 0 0 1 0
................................................................................................................................................................TTAGGGTTTTCAAAA........................................................................................................... 15 1 20 0.05 1 0 0 0 1 0
..................................................................................................................................................................AGGGTTTTGAAAAGC......................................................................................................... 15 0 20 0.05 1 0 0 0 1 0

Generated: 04/24/2015 at 10:47 AM