ID:

dsi_4900

Coordinate:

3l:11705059-11705258 -

Confidence:

Candidate

Type:

Unknown

[View on UCSC Genome Browser {Cornell Mirror}]

Legend:

mature

star

mismatch in read

Predicted structure

-35.3	-35.2	-35.2

Flybase annnotation

intergenic

No Repeatable elements found

Sense Strand Reads

TGCCTCCAATGGGGGTTGTCCCATTGACACAGCATCAATCCTGTCCGGAGGTAAGTTTAGAATAAAGTTCAAGTGTGGGTCAAGTTGAAAAGGTGGCATTCAAAACTTGAATAGCAGTGGAGAAAGCCAATGTAAGGTCTGGAAAGGAATGGCATTCCCATAACATAAAGATCACTTCATTTATATAGAGAGTTTAGGGGCACAAAACAATCTCGAAAAAGATATTCTCACCCAGCGCATCCATCACTAGATCATACTCATCAGCATCATCACCGCGACAATCAGCCGGAGGGAAAGGAG ************************************************.....................(((((((((...((((....((((((((((((...)))))).)).((((.(((.((((........(((....)))..)))).)))))))...(((((((.....)).)))))...((((((((.........))))..))))..............))))))))..))))).))))..************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR553486 Makindu_3 day-old ovaries	SRR902009 testis	M053 female body	GSM343915 embryo	SRR618934 dsim w501 ovaries	SRR553485 Chicharo_3 day-old ovaries	SRR553487 NRT_0-2 hours eggs	SRR553488 RT_0-2 hours eggs
...................................................................................................................................................................................................................................................TGACTAGATCACACTCATTA.....................................	20	3	5	2.20	11	3	5	0	0	0	1	1	1
......................................................................................GAAACGGAGGCATTCACAACTTGAA.............................................................................................................................................................................................	25	3	1	1.00	1	0	0	0	1	0	0	0	0
..........................................................AGAATAAAGTTCAAGTGTGGGTC...........................................................................................................................................................................................................................	23	0	1	1.00	1	0	0	1	0	0	0	0	0
...................................................................................................................................................................................................................................................................................CGACAATCAGCCGGAGGGAAA....	21	0	1	1.00	1	1	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................TGACTAGATCACACTCAT.......................................	18	2	3	0.33	1	0	0	0	0	0	1	0	0
.................................................................................ACGTGGAAAAGGTGGCATTA.......................................................................................................................................................................................................	20	3	12	0.17	2	0	2	0	0	0	0	0	0
...................................................................................................................................GTAAAGTCTGGAAACGAA.......................................................................................................................................................	18	2	6	0.17	1	0	0	0	0	1	0	0	0
...............................................................................................................TGACAGTGGACAAAGCCAATG........................................................................................................................................................................	21	3	6	0.17	1	0	0	0	0	1	0	0	0
.......................................................................................................AACTTGAATAGGAGT......................................................................................................................................................................................	15	1	8	0.13	1	0	0	0	0	1	0	0	0
..................................................................................CGTGGAAAAGGTGGCATTTA......................................................................................................................................................................................................	20	3	16	0.13	2	0	2	0	0	0	0	0	0
...................................................................................................................................................................................................................................................TGACTAGATCATGCTCGTC......................................	19	3	12	0.08	1	0	0	0	0	1	0	0	0
.....................................................................................................................................GAGGTTTGGAAAGGAAT......................................................................................................................................................	17	2	20	0.05	1	0	0	0	0	0	0	1	0
....................................................................................................................................................................................................................................................................................GAAAATCCGCCGGAAGGAA.....	19	3	20	0.05	1	0	0	0	0	0	0	1	0

Anti-sense strand reads

ACGGAGGTTACCCCCAACAGGGTAACTGTGTCGTAGTTAGGACAGGCCTCCATTCAAATCTTATTTCAAGTTCACACCCAGTTCAACTTTTCCACCGTAAGTTTTGAACTTATCGTCACCTCTTTCGGTTACATTCCAGACCTTTCCTTACCGTAAGGGTATTGTATTTCTAGTGAAGTAAATATATCTCTCAAATCCCCGTGTTTTGTTAGAGCTTTTTCTATAAGAGTGGGTCGCGTAGGTAGTGATCTAGTATGAGTAGTCGTAGTAGTGGCGCTGTTAGTCGGCCTCCCTTTCCTC ************************************************.....................(((((((((...((((....((((((((((((...)))))).)).((((.(((.((((........(((....)))..)))).)))))))...(((((((.....)).)))))...((((((((.........))))..))))..............))))))))..))))).))))..************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR553487 NRT_0-2 hours eggs	SRR618934 dsim w501 ovaries	GSM343915 embryo	SRR553485 Chicharo_3 day-old ovaries
.................................................................................................................................................................................................................................AGAGTGGGGCGCGTAGCT.........................................................	18	2	2	0.50	1	1	0	0	0
..........................................................................................................................................................................................................................................................................AGTAGTGGCGCTGTTAAA................	18	2	3	0.33	1	0	1	0	0
....................................................................................................................................AGTTCAGACCTGTCCTTACCGT..................................................................................................................................................	22	3	4	0.25	1	1	0	0	0
...............................TGTAGCTAGGGCAGGCCTC..........................................................................................................................................................................................................................................................	19	3	16	0.06	1	0	0	1	0
...........................................................................................................................TTCTTTTTCATTCCAGACCT.............................................................................................................................................................	20	3	17	0.06	1	0	0	0	1

Generated: 04/24/2015 at 10:37 AM