ID:

dsi_488

 Coordinate:

2r:5835103-5835252 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-27.9 -27.3

Flybase annnotation

Antisense to five_prime_UTR [2r_5834766_5835122_-]; Antisense to exon [2r_5834118_5835122_-]

No Repeatable elements found

Sense Strand Reads

AGTATATTCGCAGTTCCAATTGGCGAGAGCACACGCAGGGTTGCTTTTCCGTGAGTTCAAAACAAAGAAGTTATCGGGCGATAGTACGCAGTGTGCCGCCCTGGTCTTAGCAGCTGTGACCGTTATCGGAGCTGCCACTCGATTTGAATTTGTAATTAGGTAGAATGGAAAACTATTAAATGTTCTGGCGATTAAAAGTATCTTGGGTTTTCAGCACCTTTAGAAAGTTAAGATTACGTGGAATTAGATT
**************************************************************************.(((((...((((.....)))))))))........((((((.(((......))).))))))...((.((((..(((((....))))).)))).))********************************************************************************* 		Read size # Mismatch Hit Count Total Norm Total SRR553487
NRT_0-2 hours eggs
 SRR902009
testis
 SRR553486
Makindu_3 day-old ovaries
 SRR553488
RT_0-2 hours eggs
 GSM343915
embryo
 M024
male body		 M053
female body
 M023
head
 SRR618934
dsim w501 ovaries
...............................................................................................................AGCTGTGAGAGTTATCGGAGCA..................................................................................................................... 22 3 1 2.00 2 2 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................................AGAGAGTTAAGAGTACGTGAA........ 21 3 1 1.00 1 0 0 1 0 0 0 0 0 0
..........................................................................CGGGCGATAGTACGCAGTGTGCCGC....................................................................................................................................................... 25 0 1 1.00 1 0 1 0 0 0 0 0 0 0
....................................................................................................................................................TTTGTAATTAGGTAGAATGGA................................................................................. 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0
................CAGTTGGCTAGAGCACACGC...................................................................................................................................................................................................................... 20 2 2 0.50 1 0 0 0 1 0 0 0 0 0
.......................................................................................................................................................................................................ATCTTGGCTTTTCAGCGCCTTC............................. 22 3 2 0.50 1 0 0 0 0 1 0 0 0 0
................CAGTTGGTTAGAGCACACGC...................................................................................................................................................................................................................... 20 3 3 0.33 1 0 0 0 0 0 1 0 0 0
................CAGTTGGTTAGAGCACACG....................................................................................................................................................................................................................... 19 3 13 0.31 4 0 0 0 0 0 2 1 1 0
............................................................................................................AGCAGCTGTGATCGTCAT............................................................................................................................ 18 2 4 0.25 1 0 0 1 0 0 0 0 0 0
............................................TTCTCCGTGAGTTCGAA............................................................................................................................................................................................. 17 2 8 0.13 1 0 0 0 1 0 0 0 0 0
........................................................................ATAGGGCGATAGTACGA................................................................................................................................................................. 17 2 8 0.13 1 0 0 0 1 0 0 0 0 0
.....ATTCGCAATTCCAACTGCCGA................................................................................................................................................................................................................................ 21 3 10 0.10 1 1 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................................AGAGTTAAAAGTACGTGGAA....... 20 3 12 0.08 1 0 0 1 0 0 0 0 0 0
.................AGTTGGTTAGAGCACACGC...................................................................................................................................................................................................................... 19 3 12 0.08 1 0 0 0 0 0 0 1 0 0
..................................................................................................................................................................................AATGTTCTGGCGACT......................................................... 15 1 14 0.07 1 0 0 0 1 0 0 0 0 0
....................................................................................................................TGACCGTAAAAGGAGCTGC................................................................................................................... 19 3 20 0.05 1 0 0 0 0 0 0 0 0 1
...........................................................................................................................................................TGAGGTAGTTTGGAAAACT............................................................................ 19 3 20 0.05 1 0 0 0 0 1 0 0 0 0

Anti-sense strand reads

######################################################################------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
TCATATAAGCGTCAAGGTTAACCGCTCTCGTGTGCGTCCCAACGAAAAGGCACTCAAGTTTTGTTTCTTCAATAGCCCGCTATCATGCGTCACACGGCGGGACCAGAATCGTCGACACTGGCAATAGCCTCGACGGTGAGCTAAACTTAAACATTAATCCATCTTACCTTTTGATAATTTACAAGACCGCTAATTTTCATAGAACCCAAAAGTCGTGGAAATCTTTCAATTCTAATGCACCTTAATCTAA
*********************************************************************************.(((((...((((.....)))))))))........((((((.(((......))).))))))...((.((((..(((((....))))).)))).))************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553486
Makindu_3 day-old ovaries
 SRR618934
dsim w501 ovaries
 SRR553485
Chicharo_3 day-old ovaries
 M025
embryo
 SRR553487
NRT_0-2 hours eggs
 SRR553488
RT_0-2 hours eggs
 M024
male body
..........GTCAAGGTTAACCGCTCTCT............................................................................................................................................................................................................................ 20 1 1 1.00 1 0 1 0 0 0 0 0
...........TCAAGGTTAGTCGTTCTCGTG.......................................................................................................................................................................................................................... 21 3 5 0.80 4 4 0 0 0 0 0 0
..........GTCAAGGTTAGTCGTTCTCGT........................................................................................................................................................................................................................... 21 3 3 0.33 1 1 0 0 0 0 0 0
......................................................................................ACGTCACAGGGCGGGA.................................................................................................................................................... 16 2 20 0.15 3 3 0 0 0 0 0 0
.......................................................................................CGTCACAGGGCGGGA.................................................................................................................................................... 15 1 7 0.14 1 1 0 0 0 0 0 0
.............................................................................................................................AGCCTCGACGGTACGCTA........................................................................................................... 18 2 8 0.13 1 0 0 1 0 0 0 0
.........................................................................................................................................GAGCTGAACTTACACATT............................................................................................... 18 2 9 0.11 1 0 0 0 1 0 0 0
................................................................................................................GGACACTGGCACTAGC.......................................................................................................................... 16 2 20 0.10 2 2 0 0 0 0 0 0
......................................................................................ACGTCACAGGGCGGGAC................................................................................................................................................... 17 2 12 0.08 1 1 0 0 0 0 0 0
.......................................................................................CGTCACAGGGCGGGACT.................................................................................................................................................. 17 2 14 0.07 1 1 0 0 0 0 0 0
..........................................................................................CACATGGCGGGATCAG................................................................................................................................................ 16 2 17 0.06 1 0 0 0 0 0 1 0
.............................................AAAGGCACTCAAGATGT............................................................................................................................................................................................ 17 2 17 0.06 1 0 0 0 0 1 0 0
......................................................CAAGTTTTGTTACTGCCAT................................................................................................................................................................................. 19 3 20 0.05 1 0 0 0 0 0 0 1
....................................................................................................TACCTGAATCGTCGAC...................................................................................................................................... 16 2 20 0.05 1 0 0 0 0 1 0 0
.................................................................................................AGGGACCAGAAACGTC......................................................................................................................................... 16 2 20 0.05 1 1 0 0 0 0 0 0
..........................................................................................CACAGGGCGGGATCAGTA.............................................................................................................................................. 18 3 20 0.05 1 1 0 0 0 0 0 0

Generated: 04/24/2015 at 12:56 AM