ID:

dsi_4875

 Coordinate:

3r:4740171-4740320 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-36.1 -36.0 -36.0

Flybase annnotation

exon [3r_4740321_4740531_-]; five_prime_UTR [3r_4740321_4740531_-]; intron [3r_4733997_4740320_-]

Repeatable elements

NameClassFamilyStrand
Homo6DNAhAT-Pegasus-

Sense Strand Reads

##################################################--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
GTCAAAAGGCTCGTTCAAGTGGCAGTTGCTTTTTTTGGGCCAAGCCAGCGGTTCGTTTCGCTCGTGAGTGAGCCCCAATGCCTGTGTAAATGTGAGCAAGTGTATCCCCGTGTGTGCCTGCGTGTGCGTGTGTGTATCTGTGTGCGCTTCCTTCGTTTTGTGTATCCGTACAGCGTTTCGCTGGCGAGCTGCTCCAAATTTATACCCAGCATATTTTTGCACATTTAATTGAATTAAGTAAAGGGCTGAG
**************************************************.........((((((.(((((.....(((((.((((.(((((.(((.((((((((...((.((((((.((((....)))).)))))).)).)))))))).))))))))..........)))))))))))))).))))))...........************************************************** 		Read size # Mismatch Hit Count Total Norm Total M023
head
 SRR553488
RT_0-2 hours eggs
 SRR553487
NRT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
 GSM343915
embryo
....................................................TCGTTTCGCTCGTGAGTGAG.................................................................................................................................................................................. 20 0 1 1.00 1 1 0 0 0 0
..................................................GTTCGTTTCGCTCGTGAGTG.................................................................................................................................................................................... 20 0 1 1.00 1 1 0 0 0 0
....................................................TCGTTTCGCTCGTGAGTG.................................................................................................................................................................................... 18 0 1 1.00 1 1 0 0 0 0
........................................................................................................................................................TCGTTCTGTGTATCC................................................................................... 15 1 7 0.14 1 0 1 0 0 0
.........................................ACGCCAGCGGTTCGTCT................................................................................................................................................................................................ 17 2 15 0.13 2 0 0 2 0 0
................AAGTGGCAGTTTAGTTTTTT...................................................................................................................................................................................................................... 20 3 20 0.05 1 0 0 0 0 1
......................................................................................................................................................................................................................................GAATTGAGTATAGGGGTG.. 18 3 20 0.05 1 0 0 0 1 0

Anti-sense strand reads

CAGTTTTCCGAGCAAGTTCACCGTCAACGAAAAAAACCCGGTTCGGTCGCCAAGCAAAGCGAGCACTCACTCGGGGTTACGGACACATTTACACTCGTTCACATAGGGGCACACACGGACGCACACGCACACACATAGACACACGCGAAGGAAGCAAAACACATAGGCATGTCGCAAAGCGACCGCTCGACGAGGTTTAAATATGGGTCGTATAAAAACGTGTAAATTAACTTAATTCATTTCCCGACTC
**************************************************.........((((((.(((((.....(((((.((((.(((((.(((.((((((((...((.((((((.((((....)))).)))))).)).)))))))).))))))))..........)))))))))))))).))))))...........************************************************** 		Read size # Mismatch Hit Count Total Norm Total M023
head
 O002
Head
 SRR553487
NRT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
........................................................................................................................................AGACACACGCGAAGGAAGCAAAACACAT...................................................................................... 28 0 1 1.00 1 0 0 1 0
........................................................................................................................................AGACACACGCGAAGGAAG................................................................................................ 18 0 1 1.00 1 0 1 0 0
..................................................................TCACTCGGGGTTACGGACACATTT................................................................................................................................................................ 24 0 1 1.00 1 1 0 0 0
..................................................................................................................................................................ATGGGCATGTTGCAAA........................................................................ 16 2 18 0.06 1 0 0 0 1

Generated: 04/24/2015 at 10:25 AM