ID:

dsi_4867

 Coordinate:

2r:9714861-9715010 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-10.0 -10.0 -10.0

Flybase annnotation

CDS [2r_9715011_9715196_+]; exon [2r_9715011_9715470_+]; intron [2r_9714388_9715010_+]

No Repeatable elements found

Sense Strand Reads

--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
CAGGGTCTGGATGCCATACCGGATGAGAAAACGAACTAAATTTAATTAAGTAAAGTTTTCCGTTTAAGCTTAAGTGCAAAAGTGAATAAACGAAACGTGAAGTTCGGAAGTGATAGTTGAAATGGTCGTCTTTGGTTTTTCCTGTAGTTCCTCACAGATTTTGTTGCTGCCTCAGGTGTAAAGCTTCTTTCTCTATATAGGGTCTTGAACAAATTCCCGATGAAGAGGAGAAGAAGGAGGAGAAGGACCC
***********************************************************************************************...((((.(((.(((((((..........)))).)))))).))))((((..((.....(((.....)))....))..))))..************************************************************************ 		Read size # Mismatch Hit Count Total Norm Total SRR553486
Makindu_3 day-old ovaries
 SRR553485
Chicharo_3 day-old ovaries
 M025
embryo
 SRR618934
dsim w501 ovaries
 M053
female body
 M024
male body		 SRR553488
RT_0-2 hours eggs
 M023
head
 GSM343915
embryo
 SRR553487
NRT_0-2 hours eggs
 SRR902009
testis
................TACCGGATGAGAAAACGAACTAAATT................................................................................................................................................................................................................ 26 0 1 14.00 14 0 3 7 0 0 0 1 0 0 3 0
...........TGCCATACCGGATGAGAAAACGAAC...................................................................................................................................................................................................................... 25 0 1 9.00 9 3 3 0 3 0 0 0 0 0 0 0
......................................................................................TAAACGAAACGTGCAGTTCGGAAGTGA......................................................................................................................................... 27 1 1 6.00 6 4 2 0 0 0 0 0 0 0 0 0
................TACCGGATGAGAAAACGAACTAAAT................................................................................................................................................................................................................. 25 0 1 5.00 5 1 1 2 0 0 0 1 0 0 0 0
...........TGCCATACCGGATGAGAAAACGAACT..................................................................................................................................................................................................................... 26 0 1 3.00 3 1 0 1 0 0 0 0 1 0 0 0
.ACGGTCTGGATGCCATACCGGATGAGA.............................................................................................................................................................................................................................. 27 1 1 3.00 3 1 2 0 0 0 0 0 0 0 0 0
......................................................................................TAAACGAAACGTGCAGTTCGGAAGTGAT........................................................................................................................................ 28 1 1 2.00 2 0 2 0 0 0 0 0 0 0 0 0
.................ACCGGATGAGAAAACGAACTAATTTT............................................................................................................................................................................................................... 26 1 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0
...............................................................................................CGTGAAGTTCGGAAGTGATAGTT.................................................................................................................................... 23 0 1 2.00 2 0 0 2 0 0 0 0 0 0 0 0
................TACCGGATGAGAAAACGAACTAAT.................................................................................................................................................................................................................. 24 1 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0
..........ATGCCATACCGGATGAGAAAACGAAC...................................................................................................................................................................................................................... 26 0 1 2.00 2 1 0 1 0 0 0 0 0 0 0 0
.......TGGATGCCATACCGGATGAGAAAACGAAC...................................................................................................................................................................................................................... 29 0 1 2.00 2 0 1 0 0 1 0 0 0 0 0 0
...............................................................................................CGTGCAGTTCGGAAGTGATAGTTGAAA................................................................................................................................ 27 1 1 2.00 2 0 2 0 0 0 0 0 0 0 0 0
.............CCATACCGGATGAGAAAACGAACTAAATT................................................................................................................................................................................................................ 29 0 1 2.00 2 1 1 0 0 0 0 0 0 0 0 0
.......................TGAGAAAACGAACTAATTTTAATTAAG........................................................................................................................................................................................................ 27 1 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0
........................................TTTAATTAAGTAAAGTTTTCCGTTTA........................................................................................................................................................................................ 26 0 1 2.00 2 1 1 0 0 0 0 0 0 0 0 0
.................................................GTAAAGTTTTCCGTTTAAGCTTA.................................................................................................................................................................................. 23 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0
.................TCCGGATGAGAAAACGAACTAAATT................................................................................................................................................................................................................ 25 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
................................................................................................GTGAAGTTCGGAAGTGATAGTTGAAAA............................................................................................................................... 27 1 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0
.........................................................................................ACGAAACGTGAAGTTCGGAAGTGATAGT..................................................................................................................................... 28 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0
.................................................................................................TGCAGTTCGGAAGTGATAGTTGAAA................................................................................................................................ 25 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.................................................................................................TGCAGTTCGGAAGTGATAGTTGAAAA............................................................................................................................... 26 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................TTTGTTGCTGCCTCAGGTG........................................................................ 19 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0
...............ATACCGGATGAGAAAACGAAC...................................................................................................................................................................................................................... 21 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0
...............ATACCGGATGAGAAAACGAACC..................................................................................................................................................................................................................... 22 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
............................................................................................AAACGTGAAGTTCGGAAGTGATAGT..................................................................................................................................... 25 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0
.............................................................................................AACGTGAAGTTCGGAAGT........................................................................................................................................... 18 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
...............ATACCGGATGAGAAAACGAACTAAATT................................................................................................................................................................................................................ 27 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0
.......TGGATGCCATACCGGATGAGAAAAC.......................................................................................................................................................................................................................... 25 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0
...........................................................................................GAAACGTGAAGTTCGGA.............................................................................................................................................. 17 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0
................TACCGGATGAGAAAAC.......................................................................................................................................................................................................................... 16 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
...........................................................................................GAAACGTGAAGTTCGGAAGT........................................................................................................................................... 20 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0
.......TGGATGCCATACCGGATGAGAAAACGAA....................................................................................................................................................................................................................... 28 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0
.........GATGCCATACCGGATGAGAAAACGAACT..................................................................................................................................................................................................................... 28 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
......................................................................................TAAACGAAACGTGAAGTTCGGAAGTGA......................................................................................................................................... 27 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0
..............CATACCGGATGAGAAAACGAAC...................................................................................................................................................................................................................... 22 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
............GCCATACCGGATGAGAAAACGAACTA.................................................................................................................................................................................................................... 26 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0
.................ACCGGATGAGAAAACGAACTAAATT................................................................................................................................................................................................................ 25 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0
......................................................................TAAGTGCAAAAGTGAATAAACGAAACG......................................................................................................................................................... 27 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0
...........................................................................................................................................................................TCAAGTGAAAAGCTACTTTCT.......................................................... 21 3 2 1.00 2 0 0 0 0 0 0 2 0 0 0 0
.............................................TTAAGTAAAGTTTTCCGTTTAAGCT.................................................................................................................................................................................... 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................GTCTTGAACAAATTCCCGATGAAGA........................ 25 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0
.........................................TTAATTAAGTAAAGTTTTCCGTTTA........................................................................................................................................................................................ 25 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0
.....................................................................................................................TGAAATGGTCGTCTTTGGTTT................................................................................................................ 21 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 1
.................................................................................................TGCAGTTCGGAAGTGATAGATGAAA................................................................................................................................ 25 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.................ACCGGATGAGAAAACGAACTAAATTT............................................................................................................................................................................................................... 26 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0
........GGATGCCATACCGGATGAGAAAACGA........................................................................................................................................................................................................................ 26 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0
...........................................................................................GAAACGTGAAGTTCGGAAGTGATA....................................................................................................................................... 24 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0
.....................................................................................ATAAACGAAACGTGCAGTTCGGAAGTGA......................................................................................................................................... 28 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
...........................................................................................AAAACGTGCAGTTCGGAAGTGATAGA..................................................................................................................................... 26 3 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
...........TGCCACACCGGATGAGAAAACGAAC...................................................................................................................................................................................................................... 25 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.......................................................................AAGTGCAAAAGTGAATAAACGAAACG......................................................................................................................................................... 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.............................................................................................AACGTGCAGTTCGGAAGTGATAGT..................................................................................................................................... 24 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
.................ACCGGATGAGAAAACGAACTAAAT................................................................................................................................................................................................................. 24 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
...............ATACCGGATGAGAAAACGAACTA.................................................................................................................................................................................................................... 23 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0
.........................................TTAATTAAGTAAAGTTTTCCGTTTAAGC..................................................................................................................................................................................... 28 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
................TACCGGATGATAAAACGAACTAATT................................................................................................................................................................................................................. 25 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.................................................................................................TGCAGTTCGGAAGTGATAGATGAAAA............................................................................................................................... 26 3 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.ACGGTCTGGATGCCATACCGGATGAGAAA............................................................................................................................................................................................................................ 29 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.......................................................................................................TCGGAAGTGATAGATGAAATGGTCGTC........................................................................................................................ 27 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
...........................................................................................GAAACGTGAAGTTCGGAAGTGATAAA..................................................................................................................................... 26 2 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0
...................................................AAAGTTTTCCGTTTAAGCTTAAGTGC............................................................................................................................................................................. 26 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0
..CGGTCTGGATGCCATACCGGATGAGA.............................................................................................................................................................................................................................. 26 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
.................................................................................GTGAATAAACGAAACGTGCA..................................................................................................................................................... 20 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
................TACCGGATGAGAAAACGAACT..................................................................................................................................................................................................................... 21 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0
...............ATACCGGATGAGAAAACGAACT..................................................................................................................................................................................................................... 22 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
............GCCATACCGGATGAGAAAACGAACT..................................................................................................................................................................................................................... 25 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0
..............................................................................................ACGTGAAGTTCGGAAGTGATAGTC.................................................................................................................................... 24 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................TTCCCGATGAAGAGGAGAAGAAGGA............ 25 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0
.............................................................GTTTAAGCTTAAGTGCAAAAGTGAATA.................................................................................................................................................................. 27 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0
...GGTCGGGATGCCATACCGGATG................................................................................................................................................................................................................................. 22 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................TTGAACAAATTCCCGATGAAGAGGAGA................... 27 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
..............................................TAAGTAAAGTTTTCCGTTTAAGCTTA.................................................................................................................................................................................. 26 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0
.....................................................AGTTTTCCGTTTAAGCTTAAGTGCAAA.......................................................................................................................................................................... 27 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
............................................................................................AAACGTGCAGTTCGGAAGTGATAGT..................................................................................................................................... 25 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.................ACCGGATGAGAAAACGAACTAAATTTAAT............................................................................................................................................................................................................ 29 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................ATGTGTAAAGCTTCTT............................................................. 16 1 2 0.50 1 0 0 0 1 0 0 0 0 0 0 0
................................................................................................................................................................................................................................GAGGAGAAGAAGGAGGAGAT...... 20 1 2 0.50 1 0 0 0 0 0 0 0 0 0 0 1
.................................................................................................................TTGTTGCAATGGTCGTCTTT..................................................................................................................... 20 2 2 0.50 1 0 0 0 0 0 0 0 0 0 0 1
................................................................................................................................TCTTTGGTATTCCCTGTAG....................................................................................................... 19 2 3 0.33 1 0 1 0 0 0 0 0 0 0 0 0
................................................................................................................ATAGATGCAATGGTCGTC........................................................................................................................ 18 2 4 0.25 1 0 0 0 0 0 1 0 0 0 0 0
................................................................................................................................................................................................................................GAGGAGAAGAAGGAGG.......... 16 0 4 0.25 1 0 0 0 1 0 0 0 0 0 0 0
...................................................................................................AAGTTCGGAAGAGATA....................................................................................................................................... 16 1 5 0.20 1 0 0 0 0 0 0 1 0 0 0 0
................................................................................................GTTAAGTTCGGAAGAGATA....................................................................................................................................... 19 2 5 0.20 1 0 0 0 0 0 0 1 0 0 0 0
................................................................................................................................TCTTTGGTTTTCGCTGTAG....................................................................................................... 19 2 5 0.20 1 1 0 0 0 0 0 0 0 0 0 0
...............................................................................................................GATAGTAGAAATGGTCT.......................................................................................................................... 17 2 10 0.10 1 0 0 0 1 0 0 0 0 0 0 0
......................................................................................................GTCGGAAGTGATAGGGGAAA................................................................................................................................ 20 3 11 0.09 1 0 0 0 0 0 0 0 0 1 0 0
................................................................................................................................TCTTTGGTATTCCCTGTAGA...................................................................................................... 20 3 15 0.07 1 0 1 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................................AGAGGCGAAGAAGGACG.......... 17 2 20 0.05 1 0 0 0 0 0 0 0 0 0 1 0

Anti-sense strand reads

GTCCCAGACCTACGGTATGGCCTACTCTTTTGCTTGATTTAAATTAATTCATTTCAAAAGGCAAATTCGAATTCACGTTTTCACTTATTTGCTTTGCACTTCAAGCCTTCACTATCAACTTTACCAGCAGAAACCAAAAAGGACATCAAGGAGTGTCTAAAACAACGACGGAGTCCACATTTCGAAGAAAGAGATATATCCCAGAACTTGTTTAAGGGCTACTTCTCCTCTTCTTCCTCCTCTTCCTGGG
************************************************************************...((((.(((.(((((((..........)))).)))))).))))((((..((.....(((.....)))....))..))))..*********************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553487
NRT_0-2 hours eggs
 SRR553488
RT_0-2 hours eggs
 SRR553485
Chicharo_3 day-old ovaries
 SRR618934
dsim w501 ovaries
 M024
male body		 SRR902009
testis
.........................................................................................................................................................................GGAGTTCACTTTTCGATGAAA............................................................ 21 3 4 42.75 171 142 17 12 0 0 0
...........................................................................................................................................................................AGTTCACTTTTCGATGAAAGA.......................................................... 21 3 2 3.00 6 5 0 1 0 0 0
..........................................................................................................................................................................GAGTCCACTTTTCGATGAAA............................................................ 20 2 1 1.00 1 1 0 0 0 0 0
..................................................................................................................TCAACTTTTCAAGCAGAAACA................................................................................................................... 21 3 5 0.20 1 0 0 0 0 1 0
GGCCCAGACCAAGGGTATGG...................................................................................................................................................................................................................................... 20 3 6 0.17 1 0 0 0 1 0 0
..................................................................................................................................AAAACAAAAAGGACATC....................................................................................................... 17 1 9 0.11 1 0 0 0 0 0 1
...............................................TTCAATTCAGAAGGCATATT....................................................................................................................................................................................... 20 3 10 0.10 1 0 0 0 1 0 0
..........................................................................................................................................................................GAGTTCACTTTTCGATGAAA............................................................ 20 3 20 0.10 2 2 0 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 2r:9714811-9715060 + dsi_4867 CAGGGTCTGGATGCCATACCGGATGAGAAAACGAACTAAATTTA-ATTAAG-TAA-----AGTTT------TCCG-TTTAAGCTTAAGTGCAA-AAGTGAATAAAC--GAAACGTGAAGTTCGG-----A-----------AGTGATAGTTG--------AAATGGTCGTCTTTG--------------------------GT--TTTTCCTGTAGTTCCTC---ACAGATTTTG--T-TG-CTGCCTCAGGTGT----AAAGCTT------CTTTCTCTATATAGGGTCTTGAACAAATTCCCGATGAAGAGG------AGAAG---AAGGAGG------AGAAGGACCC
droSec2 scaffold_1:6569950-6570199 + CAGGGTCTGGATGCCATACCGGATGAGAAAACGAACTAAATTTA-ATTAAG-TAA-----AGTTT------TCCG-TTTAAGCTTAAGTGCAA-AAGTGAATAAAC--GAAACGTGCAGTTCGG-----A-----------AGTGATAGTTG--------AAATGGTCGTCTTTG--------------------------GT--TTCTCCTGTAGTTCCTC---ACAGATTTTG--T-TG-CTTGCCCAGGTGT----AAAGCTT------CTTTCTCTATATAGGGTCTTGAACAAATTCCCGATGAAGAGG------AGAAG---AAGGAGG------AGAAGGACCC
dm3 chr2R:9047036-9047285 + CAGGGTCTGGATGCCATACCGGATGAGAAAACGAACTAATTTTA-ATTAAG-TAA-----AGTTT------TCCG-TTTAAGCTTAAGTGCAA-AAGTGAATAAAC--GAAACGTGCAGTTCGG-----A-----------AGTGATAGTTG--------AAATGGTCGTTTTTG--------------------------GT--TTTTCCTGTAGTTCCTT---ACAGATTTTT-TTTTG-CTGCCTCAGGTGT----AAAGCTT------CTT--TCTCTATAGGGTCTTGAACAAATTCCCGATGAAGAGG------TGAAG---AAGGAGG------AGAAGGACCC
droEre2 scaffold_4845:16775026-16775273 - CAGGGTCTGGATGCCATACCGGATGAGAAAACGAACTAATTTTA-ATTAAG-TAG-----AGTTT------TCCG-TCTAAGCTTAAGTGCAA--AGTGAATAAAC--GAAACGTGCAGTTCGG-----A-----------AGTGATAGTTG--------AAATGGTCGTCTTTGA-------------------------GT--TTTTCCTGTAGTTCTCC---ACAGATTT-GTA--TG-CTGCCTCAGGTGT----AAAGCTT------CTT--TTTCTGTAGGGACTCGAACAAATTCCCGATGAAGAGG------AGAAG---AAGGAGG------AAAAGGATCC
droYak3 2R:7918206-7918454 - CAGGGTCTGGATGCCATACCGGATGAGAAAACAAACTAATTTTA-ATTAAG-TAA-----AGTTT------TCCG-TCTAAGCTTAAGTGCAA-AAGTGAATAAAC--GAAACGTGCAGTTCGG-----A-----------AGTGATAGTTG--------AAATGGTCGTCTTTGA-------------------------GT--TTTTCCTGTAGTTCTTC---ACAGATTG-GTA--TG-CTGCCTCAGGTGT----AAAGCTT------CTT--TTTCTATAGGGACTCGAGCAGATTCCCGATGAAGAGG------AGAAG---AAGGAGG------AAAAGGATCC
droEug1 scf7180000409672:3539137-3539390 - CAGGGTCTCGATGCCATACCAGATGAGAAAACCAATTAATTTAA-ATTAAG-TGA-----AGTTT------TCCG-TTTAAGCTTAAGTGCAA-AAGTGAATAAAC--GAAACGCTTAGTTGGG-----A-----------AGTGATAGTTG--------ATATGGTTGTTTTTAA-------------------------GT--TTTTCCTGTAGTTTTCCTACACAGCTTTAA--T-TTCCCTGGTCAGGTGT--GTAAAGCC-------CTT--TTATTTTAGGGACTTGAACAAATTCCTGATGAAGAAG------AAAAG---GTGGAGG------AAAGGGATCC
droBia1 scf7180000302292:48785-49035 + CAGGGTCTGGATGCTATACCGGATGAGAAAACTAATTAAATGTA-TTTAAG-TGA-----AGTTT------TCCG-TTTAAGCTTAAGTGCAA-AAGTGAATAAAC--GAAACGTATAGTTGGA-----A-----------AGTGATAGTTG--------AATTGGTCGCATTTTA-------------------------GT--TTTCCCTGTAGTTTTCC---ACAGATGTGT-TTTTC-CCTGCTTTGGTGT----AAAGACC------CTT--TCTTTCCAGGGACTTGAACAAATTCCCGATGAAGAGG------AGAAG---AAGGACG------AGAAGGATCC
droTak1 scf7180000415386:157912-158145 + CAGGGTCTGGATGCTATACCGGATGAGAAAACTAAATAAAT-----TTAAG-TAA-----AGTTT------TCCCTTTTAAGCTTAAGTGCAA-AAGTGAATAAA-------------ATTCGG-----A-----------AGTGATAGTTG--------AATGGGTCGTGCTTGA-------------------------GT--TTTTCCTGTAGTTTTCC---ACAGATTTGT-T--TC-CCTGCCCAGGTGT----AAAGACC------CT---TTTTTTTAGGGACTTGAACAAATTCCCGATGAAGAGG------AGAAG---AAGGATG------AAAAGGACCC
droEle1 scf7180000489694:390971-391219 - CAGGGTCTGGATGCCATACCGGATGAGAAAACTAAATAATTTGA-ATTAAG-TAA-----AGTTT------TCCG-TTTAAGCTTAAGTGCAA-AAGTGAATAAAC--GAAACGTTTAGTTGGG-----A-----------AGT------CG--------AATAGCTTGTTTCTGA-------------------------GT--TTTCCTTGTAGTGTTTTT--TCAGAGTTCT----TG-CCCTCTCATGTGT--GTAAAGCCCT-----ATT--TCTTTTTAGGGACTTGAACAAATTCCCGATGAGGAGG------AGGACAATAAGGATC------AAAGGGATCA
droRho1 scf7180000779872:289382-289626 - CAGGGTCTGGACGCCATACCGGATGAGAAAACTAATTAATTTGA-ATTAAG-TAA-----AGTTT------TCCG-TTTAAGCTTAAGTGCAA-AAGTGAATAAAC--GAAACGTATAGTTGGG-----A-----------AGTGATAGTTG--------AATTGGTCGTCTCTGA-------------------------GT--TTCTCCTGTAGTTTTTTTT-ACAGAGTTTT----TGCCCTGCTCAGGTGT----AAAGCTA------CTT--TCTTTTTAGGGACTTGAGCAAATTCCTGATGAAGAAG------AGGAA---AAGGAAC------AAA------T
droFic1 scf7180000454066:213059-213302 - CAGGGTCTGGATGCCATACCGGATGAGAAAA---AATAATTCGA-TTTAAG-TGA-----AGTTT------TCCG-ATTAAGCTTAAGTGCAA-AAGTGAATAAAT--AAAACGTATAGTTCGG-----A-----------AGTGATAGTTG--------AA-TGGTCGTTTTTGC-------------------------GT--TTTTCCTGTAGTTTTCC---CT-GAGTTTC----TG-TCCACTGAGATGT----AAACCCCG-----AAA--TCTTTTTAGGGACTTGAACAAATTCCCGATGAAGAGG------AAGAT---AAGGATC------GAAAGGATCC
droKik1 scf7180000302639:242965-243214 - CAGGGTCTGGATGCCATACCGGATGAGAAAAAGAACTAGTTTGA-ATTAAG-TCA-----AATTT------TTC--TTTAAACTTAAGGGCAA-AAGTGAATAAAC--GAAGCGTTTAGTGCGA-----A-----------AGTGATAGTTC--------AATTGGTGGCCTTTGT---------------AG----A---GT--TTTTCCTGTAGTTTCCC---TCTTAGTTTC----T----CCCT-CGGTGT--ACAGAGCC-------ATT--TCTTTCTAGGGACTCGAGCAAATTCCTGATGAAGAGG------AGGACCAGAAGGATA------ATCAGGAATG
droAna3 scaffold_13266:6511274-6511514 + CAGGGTCTGGATGCCATACCGGATGAGAAG---AAATAGGTTGA-ATTAAG-TAC-----A-TTT------TTCG-ATTAAGCTTAAGTGCAA-AAGTGAATAAAT--GAAACGTATAGTGCGG-----A-----------AGTGAAAGTCT--------CTCGAGTGGTTTTAG--------------------------AT--TTTTCCTGTAGTCCTCT---TCCGATTTGG----T-----CCTTGGGTGT----ATAGCT-------ATT--TAATTCCAGGGTCTTGAAGAAATTCCCGAGGAGGAGG------AAAAG---AAAGAAG---AGGAACAGCAGGA
droBip1 scf7180000396423:87263-87508 + CAGGGTCTGGATGCCATACCGGATGAGAAAAAGGAATAGGTTGA-ATTAAG-TAA-----AACTT------TTCG-ATTAAGCTTAAGTGCAA-AAGTGAATAAAT--GAAACATTTAGTGCGA-----A-----------AGTGAAAGCTC--------CTTGGCTCGTTTTA---------------------------GA--TTCTCCTGTAGTCCTTC---TTCGGCGTAT-TT-T-----GCTTGGGTGT----ATAGCT-------ATT--TCATTGCAGGGTCTTGAAGAAATTCCCGATGAGGAGG------AAAAG---AAACAAG---AGGAGCCGCAGGA
dp5 3:2535058-2535271 + CAGGGCCTCGATGCCATACCAGACGAGAAGAAGGAATAAGTTGA-TCTAAG-TGA-----AATTT------CT---TTAAAACTTAAGTGCAA-AAGTGAATAAAC-------GTAAAGTGCGG-----A-----------AGTGAAAGAT------------TGGTCGTTGTAGA-------------------------G---TTTTCCTGTAGTTTTCC---TTCCA-------T-T-----GCCCAGATCTATACCCAGCCCTC----TTC--TCTTCCTAGGGACTTGACGCCATTCCCGATGATGAAG------AA-----------------------------
droPer2 scaffold_2:2725885-2726098 + CAGGGCCTCGATGCCATACCAGACGAGAAGAAGGAATAAGTTGA-TCTAAG-TGA-----AATTT------CT---TTAAAACTTAAGTGCAA-AAGTGAATAAAC-------GTAAAGTGCGG-----A-----------AGTGAAAGAT------------TGGTCGTTGTAGA-------------------------G---TTTTCCTGTAGTTTTCC---TTCCA-------T-T-----GCCCAGATCTATACCCAGCCCTC----TTC--TCTTCCTAGGGACTTGACGCCATTCCCGATGATGAAG------AA-----------------------------
droWil2 scf2_1100000004513:401686-401916 + dwi_812 CAGGGTCTCGAATCGATACCAGATGAGAAAAAGAATTAATTTTA-AAAAAA-TTACTGCAAATGTGTTGATTGAT-TTAAATTTTAAGTGCAAAAAGTGAATAAATCAGAAA---------CTA-----A-----------AGTGAGATTTT--------AAGAGTTTACT------------------TCATGGAGAAGCGC--CCTTTTT-----------------------------------------------------T------TGT--TTTTTACAGGGTCTAGAGTCAATATCCGATGAAAATCGCGATGAGGAG---AACGATCAAACGGCCAAGGAGGA
droVir3 scaffold_12875:808698-808956 + CAGGGTCTCCATGCTATACCAGATGAGTCTAAAAAATAAATGTA-ACGTAGTTGA-----AATT---------CT-GTTAAGCTTAAGTGCAAAAAGTGAATAAAT-------TTACAGTACGA-----A-----------ATTGAAAAGTT--------ATATCTTTTAGTTAGG------GTTTTTTTTAGCAGGTTGCGC--TCGTTTAGTAGTTTCGT---AGAATCTA-GTG--TC-TATTACCGATTCT----CAAGGGC------ATT--TATTTACAGGGCCTGGAAGAGATTGAGGACGAAGAAG------AAGAG---AAGAA---------AAAGGAAGA
droMoj3 scaffold_6496:3830189-3830437 + CAGGGTCTTAATGCTGTACCAGATGAGGATAGGAAGTAAATGTAAACCTAGTTGA-----AATT---------CT-GTTAAGCTTAAGTGCAAAAAGTGAATAAAA-------TTACAAATCGAAACTGAATTAAAATTGGAGTTAAAATTG--------AAAATAT-ATATTTAA-------------------------GTAGTATTTCTTTAGTTCTCA---TTAGAGTTTA----TG-CTC-----GGTGC-----------TTTCGAATT--CATTTACAGGGTCTGAAGGAGATTAAAGAAGAAGACG------AGTAC---GAAAAAG------AGAA-----G
droGri2 scaffold_15245:10145606-10145861 - CAGGGTCTCCATGCTATTCCAGATGAGTCCAAAAATTAAATGTT-ATGTAGTTGA-----AATT---------CT-ATTAAGCTTAAGTGCAA-AAGTGAATAAAT-------ATACAGTACGA-----A-----------ATTGAAAATCGAAAATTTTAAAGGCTCATATTTCAGTTATTGT------------------T--AGAACTTGT-------------AGAATT-GTAT-TA-TTTAGCGATATTT-----AAGTGC------ATT--CCTTTACAGGGTCTAGAAGAGATTGAAGATGAGGATGAAGATGTTGCG---AATAAAA---AGACGCAACAAAC

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
CAGGGTCTGGATGCCATACCGGATGAGAAAACGAACTAAATTTA-ATTAAG-TAA-----AGTTT------TCCG-TTTAAGCTTAAGTGCAA-AAGTGAATAAAC--GAAACGTGAAGTTCGG-----A-----------AGTGATAGTTG--------AAATGGTCGTCTTTG--------------------------GT--TTTTCCTGTAGTTCCTC---ACAGATTTTG--T-TG-CTGCCTCAGGTGT----AAAGCTT------CTTTCTCTATATAGGGTCTTGAACAAATTCCCGATGAAGAGG------AGAAG---AAGGAGG------AGAAGGACCCSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
................TACCGGATGAGAAAACGAACTAAATT.....................................................................................................................................................................................................................................................................................................................26114.001400700030310000000
...........TGCCATACCGGATGAGAAAACGAAC...........................................................................................................................................................................................................................................................................................................................2519.00900000033003000000
................TACCGGATGAGAAAACGAACTAAAT......................................................................................................................................................................................................................................................................................................................2515.00500200011010000000
...........TGCCATACCGGATGAGAAAACGAACT..........................................................................................................................................................................................................................................................................................................................2613.00310100001000000000
................................................................................................................CGTGAAGTTCGG-----A-----------AGTGATAGTT........................................................................................................................................................................................................2312.00200200000000000000
................TACCGGATGAGAAAACGAACTAAT.......................................................................................................................................................................................................................................................................................................................2412.00200000002000000000
..........ATGCCATACCGGATGAGAAAACGAAC...........................................................................................................................................................................................................................................................................................................................2612.00200100001000000000
.......TGGATGCCATACCGGATGAGAAAACGAAC...........................................................................................................................................................................................................................................................................................................................2912.00200010010000000000
.............CCATACCGGATGAGAAAACGAACTAAATT.....................................................................................................................................................................................................................................................................................................................2912.00200000011000000000
........................................TTTA-ATTAAG-TAA-----AGTTT------TCCG-TTTA...............................................................................................................................................................................................................................................................................2612.00200000011000000000
..................................................G-TAA-----AGTTT------TCCG-TTTAAGCTTA.........................................................................................................................................................................................................................................................................2311.00100000000001000000
.................................................................................................................GTGAAGTTCGG-----A-----------AGTGATAGTTG--------AAAA...........................................................................................................................................................................................2711.00101000000000000000
........................................................................................................AC--GAAACGTGAAGTTCGG-----A-----------AGTGATAGT.........................................................................................................................................................................................................2811.00100010000000000000
.......................................................................................................................................................................................................................................TTTG--T-TG-CTGCCTCAGGTG.................................................................................................1911.00110000000000000000
...............ATACCGGATGAGAAAACGAAC...........................................................................................................................................................................................................................................................................................................................2111.00110000000000000000
...............ATACCGGATGAGAAAACGAACC..........................................................................................................................................................................................................................................................................................................................2211.00100100000000000000
.............................................................................................................AAACGTGAAGTTCGG-----A-----------AGTGATAGT.........................................................................................................................................................................................................2511.00101000000000000000
..............................................................................................................AACGTGAAGTTCGG-----A-----------AGT...............................................................................................................................................................................................................1811.00100100000000000000
...............ATACCGGATGAGAAAACGAACTAAATT.....................................................................................................................................................................................................................................................................................................................2711.00100010000000000000
.......TGGATGCCATACCGGATGAGAAAAC...............................................................................................................................................................................................................................................................................................................................2511.00100000000001000000
............................................................................................................GAAACGTGAAGTTCGG-----A-----------..................................................................................................................................................................................................................1711.00100000000001000000
................TACCGGATGAGAAAAC...............................................................................................................................................................................................................................................................................................................................1611.00100000010000000000
............................................................................................................GAAACGTGAAGTTCGG-----A-----------AGT...............................................................................................................................................................................................................2011.00100010000000000000
.......TGGATGCCATACCGGATGAGAAAACGAA............................................................................................................................................................................................................................................................................................................................2811.00100010000000000000
.........GATGCCATACCGGATGAGAAAACGAACT..........................................................................................................................................................................................................................................................................................................................2811.00100100000000000000
.....................................................................................................TAAAC--GAAACGTGAAGTTCGG-----A-----------AGTGA.............................................................................................................................................................................................................2711.00100000000001000000
..............CATACCGGATGAGAAAACGAAC...........................................................................................................................................................................................................................................................................................................................2211.00100100000000000000
............GCCATACCGGATGAGAAAACGAACTA.........................................................................................................................................................................................................................................................................................................................2611.00101000000000000000
.................ACCGGATGAGAAAACGAACTAAATT.....................................................................................................................................................................................................................................................................................................................2511.00100010000000000000
....................................................................................TAAGTGCAA-AAGTGAATAAAC--GAAACG.............................................................................................................................................................................................................................................2711.00100000000001000000
..............................................TTAAG-TAA-----AGTTT------TCCG-TTTAAGCT...........................................................................................................................................................................................................................................................................2511.00100000001000000000
...............................................................................................................................................................................................................................................................................................GTCTTGAACAAATTCCCGATGAAGA.......................................2511.00100000000010000000
.........................................TTA-ATTAAG-TAA-----AGTTT------TCCG-TTTA...............................................................................................................................................................................................................................................................................2511.00100000000010000000
......................................................................................................................................................TG--------AAATGGTCGTCTTTG--------------------------GT--TT................................................................................................................................................2111.00100000000000001000
.................ACCGGATGAGAAAACGAACTAAATTT....................................................................................................................................................................................................................................................................................................................2611.00101000000000000000
........GGATGCCATACCGGATGAGAAAACGA.............................................................................................................................................................................................................................................................................................................................2611.00100000000000100000
............................................................................................................GAAACGTGAAGTTCGG-----A-----------AGTGATA...........................................................................................................................................................................................................2411.00100010000000000000
.....................................................................................AAGTGCAA-AAGTGAATAAAC--GAAACG.............................................................................................................................................................................................................................................2611.00100000001000000000
.................ACCGGATGAGAAAACGAACTAAAT......................................................................................................................................................................................................................................................................................................................2411.00100000010000000000
...............ATACCGGATGAGAAAACGAACTA.........................................................................................................................................................................................................................................................................................................................2311.00101000000000000000
.........................................TTA-ATTAAG-TAA-----AGTTT------TCCG-TTTAAGC............................................................................................................................................................................................................................................................................2811.00100000001000000000
............................................................................................................GAAACGTGAAGTTCGG-----A-----------AGTGATAAA.........................................................................................................................................................................................................2611.00100010000000000000
.....................................................AA-----AGTTT------TCCG-TTTAAGCTTAAGTGC....................................................................................................................................................................................................................................................................2611.00100000000000100000
................TACCGGATGAGAAAACGAACT..........................................................................................................................................................................................................................................................................................................................2111.00110000000000000000
...............ATACCGGATGAGAAAACGAACT..........................................................................................................................................................................................................................................................................................................................2211.00100100000000000000
............GCCATACCGGATGAGAAAACGAACT..........................................................................................................................................................................................................................................................................................................................2511.00101000000000000000
...............................................................................................................ACGTGAAGTTCGG-----A-----------AGTGATAGTC........................................................................................................................................................................................................2411.00100100000000000000
...........................................................................................................................................................................................................................................................................................................TTCCCGATGAAGAGG------AGAAG---AAGGA..................2511.00100000000000100000
..........................................................................G-TTTAAGCTTAAGTGCAA-AAGTGAATA........................................................................................................................................................................................................................................................2711.00100010000000000000
..................................................................................................................................................................................................................................................................................................TTGAACAAATTCCCGATGAAGAGG------AGA............................2711.00100000001000000000
...............................................TAAG-TAA-----AGTTT------TCCG-TTTAAGCTTA.........................................................................................................................................................................................................................................................................2611.00100000000001000000
............................................................AGTTT------TCCG-TTTAAGCTTAAGTGCAA-A................................................................................................................................................................................................................................................................2711.00100000001000000000
.................ACCGGATGAGAAAACGAACTAAATTTA-AT................................................................................................................................................................................................................................................................................................................2911.00100000010000000000
......................................................................................................................................................................................................................................................................................................................GAGG------AGAAG---AAGGAGG------AGAT......2020.50100000000000001000
......................................................................................................................................................................................................................................................................................................................GAGG------AGAAG---AAGGAGG------..........1640.25100000000001000000
droSec2
CAGGGTCTGGATGCCATACCGGATGAGAAAACGAACTAAATTTA-ATTAAG-TAA-----AGTTT------TCCG-TTTAAGCTTAAGTGCAA-AAGTGAATAAAC--GAAACGTGCAGTTCGG-----A-----------AGTGATAGTTG--------AAATGGTCGTCTTTG--------------------------GT--TTCTCCTGTAGTTCCTC---ACAGATTTTG--T-TG-CTTGCCCAGGTGT----AAAGCTT------CTTTCTCTATATAGGGTCTTGAACAAATTCCCGATGAAGAGG------AGAAG---AAGGAGG------AGAAGGACCCSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
..............................................................................................................AACGTGCAGTTCGG-----A-----------AGTGATA...........................................................................................................................................................................................................2213.0030021
........GGATGCCATACCGGATGAGA...................................................................................................................................................................................................................................................................................................................................2012.0020020
................................................AAG-TAA-----AGTTT------TCCG-TTTAAGCT...........................................................................................................................................................................................................................................................................2312.0020110
........GGATGCCATACCGGATGAGAA..................................................................................................................................................................................................................................................................................................................................2112.0020200
......CTGGATGCCATACCGGATGAGAAAAC...............................................................................................................................................................................................................................................................................................................................2612.0020020
........GGATGCCATACCGGATGAGAAAACGAA............................................................................................................................................................................................................................................................................................................................2712.0020020
.............................................................................................................AAACGTGCAGTTCGG-----A-----------AGTGATAGT.........................................................................................................................................................................................................2512.0020200
.............................................................................TTAAGCTTAAGTGCAA-AAGT.............................................................................................................................................................................................................................................................2012.0021010
....................................................................................TAAGTGCAA-AAGTGAATAAAC--...................................................................................................................................................................................................................................................2112.0020110
....GTCTGGATGCCATACCGG.........................................................................................................................................................................................................................................................................................................................................1811.0010001
..................................................................................................................TGCAGTTCGG-----A-----------AGTGATAGTTG--------AACG...........................................................................................................................................................................................2611.0010001
.............................................................................................................AAACGTGCAGTTCGG-----A-----------AGTGAT............................................................................................................................................................................................................2211.0010100
...........................................................................................................................................................................................................................................................................................................TTCCCGATGAAGAGG------AGAAG---AA.....................2211.0010001
..............................................................................................................AACGTGCAGTTCGG-----A-----------AGTGAT............................................................................................................................................................................................................2111.0010100
................................................AAG-TAA-----AGTTT------TCCG-TTTAAG.............................................................................................................................................................................................................................................................................2111.0010010
..................................................................................................GAATAAAC--GAAACGTGCAGTT......................................................................................................................................................................................................................................2111.0010010
..............................................................................TAAGCTTAAGTGCAA-AAGTGAAT.........................................................................................................................................................................................................................................................2311.0010010
...............................................................TT------TCCG-TTTAAGCTTAAGTGCAA-A................................................................................................................................................................................................................................................................2411.0010001
.............................................................................TTAAGCTTAAGTGCAA-AAGTG............................................................................................................................................................................................................................................................2111.0010010
................................................................................AGCTTAAGTGCAA-AAGTGA...........................................................................................................................................................................................................................................................1911.0010010
.........................................................................................................C--GAAACGTGCAGTTCGG-----A-----------..................................................................................................................................................................................................................1811.0010010
......CTGGATGCCATACCGGATGAGAA..................................................................................................................................................................................................................................................................................................................................2311.0010010
.......................................................................................................AAC--GAAACGTGCAGTTCGG-----A-----------AGT...............................................................................................................................................................................................................2311.0010010
................................................................................................................CGTGCAGTTCGG-----A-----------AGTGATA...........................................................................................................................................................................................................2011.0010010
...............................................................................................................................................................................................................................................................................................................CGATGAAGAGG------AGAAG---AA.....................1811.0010001
...........................................................................................AA-AAGTGAATAAAC--GAAACGTGCA.........................................................................................................................................................................................................................................2411.0010010
..........................................................................G-TTTAAGCTTAAGTGCAA-AA...............................................................................................................................................................................................................................................................2011.0010010
.............................................................................................................AAACGTGCAGTTCGG-----A-----------AA................................................................................................................................................................................................................1811.0010010
................................................................T------TCCG-TTTAAGCTTAAGTGCAA-A................................................................................................................................................................................................................................................................2311.0010010
.................................................................................................................GTGCAGTTCGG-----A-----------AGTGATAGTTG--------AAAA...........................................................................................................................................................................................2711.0010100
....................................TAAATTTA-ATTAAG-TAA-----AGTTT------TCCG-T..................................................................................................................................................................................................................................................................................2711.0010010
...................................................................................TTAAGTGCAA-AAGTGAATAAAC--G..................................................................................................................................................................................................................................................2311.0010010
...................................................................................................................GCAGTTCGG-----A-----------AGTGATAG..........................................................................................................................................................................................................1811.0010001
.........GATGCCATACCGGATGAG....................................................................................................................................................................................................................................................................................................................................1811.0010010
......CTGGATGCCATACCGGATGAGA...................................................................................................................................................................................................................................................................................................................................2211.0010100
........GGATGCCATACCGGATGAGAAAACG..............................................................................................................................................................................................................................................................................................................................2511.0010010
...................................................................................TTAAGTGCAA-AAGTGAATAAAC--GAA................................................................................................................................................................................................................................................2511.0010100
.............................................................................................................................................................................................................................C---ACAGATTTTG--T-TG-CTTGCCCA.....................................................................................................2211.0010100
.......................................................................................................AAC--GAAACGTGCAGTTCGG-----A-----------AAAA..............................................................................................................................................................................................................2411.0010010
...............................CGAACTAAATTTA-ATTAAG-T..........................................................................................................................................................................................................................................................................................................2011.0010010
..................................................................................CTTAAGTGCAA-AAGTGAATAAAC--...................................................................................................................................................................................................................................................2311.0010010
................................................................................................GTGAATAAAC--GAAACGTGCAGTTCG....................................................................................................................................................................................................................................2511.0010100
....................................................................................TAAGTGCAA-AAGTGAATAAAC--GAAA...............................................................................................................................................................................................................................................2511.0010010
.................................................................................................................GTGCAGTTCGG-----A-----------AGTGATAGTT........................................................................................................................................................................................................2211.0011000
....................................................................................................................CAGTTCGG-----A-----------AGTGATAGTTG--------AAAAA..........................................................................................................................................................................................2511.0011000
...............................................................................................................ACGTGCAGTTCGG-----A-----------AGTGATA...........................................................................................................................................................................................................2111.0010100
.................................................................................................................GTGCAGTTCGG-----A-----------AGTGAT............................................................................................................................................................................................................1811.0010010
...................................................................................................................GCAGTTCGG-----A-----------AGTGATAGT.........................................................................................................................................................................................................1911.0011000
.............................................................GTTT------TCCG-TTTAAGCTTAAGTGCAA-A................................................................................................................................................................................................................................................................2611.0011000
.........GATGCCATACCGGATGAGAAAACGA.............................................................................................................................................................................................................................................................................................................................2511.0010010
.................................................................................................................GTGCAGTTCGG-----A-----------AGTGATAGT.........................................................................................................................................................................................................2111.0010010
................................................................................................................CGTGCAGTTCGG-----A-----------AGTGATAGTTG--------AA.............................................................................................................................................................................................2611.0010100
.......TGGATGCCATACCGGATGAGAA..................................................................................................................................................................................................................................................................................................................................2211.0011000
................TACCGGATGAGAAAACGAACTA.........................................................................................................................................................................................................................................................................................................................2211.0011000
.....................................................AA-----AGTTT------TCCG-TTTAAGCTT..........................................................................................................................................................................................................................................................................2011.0010010
..................................................................................................GAATAAAC--GAAACGTGCAGTTCGG-----A-----------A.................................................................................................................................................................................................................2611.0010010
................................................................T------TCCG-TTTAAGCTTAAGTGCAA-AA...............................................................................................................................................................................................................................................................2411.0010010
.............................................................................TTAAGCTTAAGTGCAA-AA...............................................................................................................................................................................................................................................................1811.0010010
..................................................................................CTTAAGTGCAA-AAGTGAATAAAC--GAA................................................................................................................................................................................................................................................2611.0010100
................................................AAG-TAA-----AGTTT------TCCG-TTTAAGC............................................................................................................................................................................................................................................................................2211.0010100
...............ATACCGGATGAGAAAACGAA............................................................................................................................................................................................................................................................................................................................2011.0010010
..............................................................................................................AACGTGCAGTTCGG-----A-----------AAA...............................................................................................................................................................................................................1880.1310010
dm3
CAGGGTCTGGATGCCATACCGGATGAGAAAACGAACTAATTTTA-ATTAAG-TAA-----AGTTT------TCCG-TTTAAGCTTAAGTGCAA-AAGTGAATAAAC--GAAACGTGCAGTTCGG-----A-----------AGTGATAGTTG--------AAATGGTCGTTTTTG--------------------------GT--TTTTCCTGTAGTTCCTT---ACAGATTTTT-TTTTG-CTGCCTCAGGTGT----AAAGCTT------CTT--TCTCTATAGGGTCTTGAACAAATTCCCGATGAAGAGG------TGAAG---AAGGAGG------AGAAGGACCCSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
................TACCGGATGAGAAAACGAACTAATTT.....................................................................................................................................................................................................................................................................................................................26139.003900000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000055310800000000000000020100300000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000
..................CCGGATGAGAAAACGAACTAATTTT....................................................................................................................................................................................................................................................................................................................25120.002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000030411200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........GGATGCCATACCGGATGAGA...................................................................................................................................................................................................................................................................................................................................20111.00110000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000080000000000000000000000000000000000000000000000000000000000000000000000000000001010000000010000000000000000000000000000
...........TGCCATACCGGATGAGAAAACGAAC...........................................................................................................................................................................................................................................................................................................................25110.00100000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000100200000000000000000000000000100010000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000011000000
....................................................................................TAAGTGCAA-AAGTGAATA........................................................................................................................................................................................................................................................1819.0090000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................CCGGATGAGAAAACGAACTAATTT.....................................................................................................................................................................................................................................................................................................................2418.0080000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000700100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................AAGTGAATAAAC--GAAACGTGCAGT.......................................................................................................................................................................................................................................2417.0070000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000001010011000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
..................................ACTAATTTTA-ATTAAG-TAA-----AGT................................................................................................................................................................................................................................................................................................2217.0070000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000700000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......CTGGATGCCATACCGGATGAGAA..................................................................................................................................................................................................................................................................................................................................2317.0070000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000040000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................ACCGGATGAGAAAACGAACTAATTTT....................................................................................................................................................................................................................................................................................................................2617.0070000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002100400000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
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...GGTCTGGATGCCATACCGGATGAGA...................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000
................................................................T------TCCG-TTTAAGCTTAAGTGCA...................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........GGATGCCATACCGGATGAGAAAACGAA............................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................CGTGCAGTTCGG-----A-----------AGTGATAGTT........................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............ATACCGGATGAGAAAACG..............................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................GCTTAAGTGCAA-AAGTGA...........................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................CAA-AAGTGAATAAAC--GAAACGTGCAGTTC.....................................................................................................................................................................................................................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................GTTT------TCCG-TTTAAGCTTAAGTG.....................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................ATAAAC--GAAACGTGCAGTTCGG-----A-----------AA................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................CAGTTCGG-----A-----------AGTGATAGTTG--------AAA............................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000
...............................................................TT------TCCG-TTTAAGCTTAAGTGC....................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................TGAATAAAC--GAAACGTGCAG........................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................AGTTT------TCCG-TTTAAGCTTAAGTGCA...................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................T------TCCG-TTTAAGCTTAAGTGCAA-AAGTG............................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........GGATGCCATACCGGATGA.....................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....GTCTGGATGCCATACCGGAT.......................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................AGCTTAAGTGCAA-AAGTGAATAAAC--...................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................GTTCGG-----A-----------AGTGATAGTTG--------...............................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................AATGGTCGTTTTTG--------------------------GT--TTC...............................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000
...GGTCTGGATGCCATACCGGATGAGAAA.................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................ACGTGCAGTTCGG-----A-----------AGTG..............................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
.....................................................................................................TAAAC--GAAACGTGCAGTTCGG-----A-----------AGT...............................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
.................ACCGGATGAGAAAACGAACTAATTTTA-A.................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......CTGGATGCCATACCGGATGAG....................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
.......................................................................................................................TTCGG-----A-----------AGTGATAGTTG--------A..............................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000
..................CCGGATGAGAAAACGAACTAATTTTA-A.................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................GTTT------TCCG-TTTAAGCTTAAGTGCAA-AAGTG............................................................................................................................................................................................................................................................3011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............CCATACCGGATGAGAAAA................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
..............................................................TTT------TCCG-TTTAAGCTTAAGTGCAA-AAG..............................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droEre2
CAGGGTCTGGATGCCATACCGGATGAGAAAACGAACTAATTTTA-ATTAAG-TAG-----AGTTT------TCCG-TCTAAGCTTAAGTGCAA--AGTGAATAAAC--GAAACGTGCAGTTCGG-----A-----------AGTGATAGTTG--------AAATGGTCGTCTTTGA-------------------------GT--TTTTCCTGTAGTTCTCC---ACAGATTT-GTA--TG-CTGCCTCAGGTGT----AAAGCTT------CTT--TTTCTGTAGGGACTCGAACAAATTCCCGATGAAGAGG------AGAAG---AAGGAGG------AAAAGGATCCSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
.........GATGCCATACCGGATGAGA...................................................................................................................................................................................................................................................................................................................................1912.0020001100
......CTGGATGCCATACCGGATGAGAA..................................................................................................................................................................................................................................................................................................................................2312.0021000010
......................................................G-----AGTTT------TCCG-TCTAAGCTTAAGTGCA...................................................................................................................................................................................................................................................................2612.0022000000
.................................................................................................................GTGCAGTTCGG-----A-----------AGTGATAGTT........................................................................................................................................................................................................2212.0020000110
........GGATGCCATACCGGATGAGA...................................................................................................................................................................................................................................................................................................................................2012.0020001100
............................................................................................................GAAACGTGCAGTTCGG-----A-----------AGTGAT............................................................................................................................................................................................................2312.0020001100
..........ATGCCATACCGGATGAGAAAACGAACT..........................................................................................................................................................................................................................................................................................................................2712.0022000000
.............................................................................CTAAGCTTAAGTGCAA--AGTGAATAAAC--...................................................................................................................................................................................................................................................2712.0020000020
.....................................................................................AAGTGCAA--AGTGAATAAAC--G..................................................................................................................................................................................................................................................2012.0020000020
...................................................................................TTAAGTGCAA--AGTGAATAAAC--GA.................................................................................................................................................................................................................................................2311.0010001000
.............................AACGAACTAATTTTA-ATTAAG-TAG-----AGT................................................................................................................................................................................................................................................................................................2711.0010000010
.................................................................................................................GTGCAGTTCGG-----A-----------AGTGATAGTTT--------...............................................................................................................................................................................................2311.0010001000
...............................................................................AAGCTTAAGTGCAA--AGTGA...........................................................................................................................................................................................................................................................1911.0010001000
................................................................................................................CGTGCAGTTCGG-----A-----------AGTGATAA..........................................................................................................................................................................................................2111.0010000010
....................................................................................TAAGTGCAA--AGTGAATAAA......................................................................................................................................................................................................................................................1911.0010001000
.................................................................................................TGAATAAAC--GAAACGTGCAGT.......................................................................................................................................................................................................................................2111.0010001000
..................................................................................................GAATAAAC--GAAACGTGCAGTTCGG-----A-----------AGT...............................................................................................................................................................................................................2811.0010000100
................................................................................................................CGTGCAGTTCGG-----A-----------AGTGAT............................................................................................................................................................................................................1911.0010000010
..................................................................................CTTAAGTGCAA--AGTGAATAAAC--...................................................................................................................................................................................................................................................2211.0010001000
..............................................................................................................AACGTGCAGTTCGG-----A-----------AGC...............................................................................................................................................................................................................1811.0010100000
.................ACCGGATGAGAAAACGAACTAAT.......................................................................................................................................................................................................................................................................................................................2311.0011000000
......CTGGATGCCATACCGGATGAGA...................................................................................................................................................................................................................................................................................................................................2211.0010100000
........GGATGCCATACCGGATGAGAAAA................................................................................................................................................................................................................................................................................................................................2311.0010000100
.......................................................................................................AAC--GAAACGTGCAGTTCG....................................................................................................................................................................................................................................1811.0011000000
..........ATGCCATACCGGATGAGA...................................................................................................................................................................................................................................................................................................................................1811.0011000000
................TACCGGATGAGAAAACGAACT..........................................................................................................................................................................................................................................................................................................................2111.0011000000
................................................................T------TCCG-TCTAAGCTTAAGTGCAA--AGT.............................................................................................................................................................................................................................................................2511.0010001000
.............................................ATTAAG-TAG-----AGTTT------TCCG-T..................................................................................................................................................................................................................................................................................1911.0010000010
........GGATGCCATACCGGATGAGAAA.................................................................................................................................................................................................................................................................................................................................2211.0010000100
..........................................................................G-TCTAAGCTTAAGTGCAA--AGT.............................................................................................................................................................................................................................................................2111.0010001000
......CTGGATGCCATACCGGATGAGAAA.................................................................................................................................................................................................................................................................................................................................2411.0010000100
..................................................................................CTTAAGTGCAA--AGTGAATAAA......................................................................................................................................................................................................................................................2111.0010000010
..................................................................................................GAATAAAC--GAAACGTGCAGTTCGG-----A-----------..................................................................................................................................................................................................................2511.0011000000
.............................................................................................................................................................................................................................................................GT----AAAGCTT------CTT--TTTCTGTAGG................................................................2211.0010000010
.....................................................................................AAGTGCAA--AGTGAATAAAC--GAAAC..............................................................................................................................................................................................................................................2411.0010100000
......................................................................................................AAAC--GAAACGTGCAGTTCGG-----A-----------AGTGA.............................................................................................................................................................................................................2611.0010000010
................................................AAG-TAG-----AGTTT------TCCG-TCTAAGC............................................................................................................................................................................................................................................................................2211.0010000100
..........................................................................G-TCTAAGCTTAAGTGCAA--A...............................................................................................................................................................................................................................................................1911.0010000010
..........................................................................G-TCTAAGCTTAAGTGCAA--AGTG............................................................................................................................................................................................................................................................2211.0010001000
.....................................................AG-----AGTTT------TCCG-TCTAAGCTT..........................................................................................................................................................................................................................................................................2011.0011000000
........GGATGCCATACCGGATGAGAA..................................................................................................................................................................................................................................................................................................................................2111.0010000100
.....................................AATTTTA-ATTAAG-TAG-----AGTTT------TCCG-T..................................................................................................................................................................................................................................................................................2611.0010000100
..................................................................................................................TGCAGTTCGG-----A-----------AGTGATAGTTG--------A..............................................................................................................................................................................................2311.0010000100
.............................................................GTTT------TCCG-TCTAAGCTTAAG.......................................................................................................................................................................................................................................................................2011.0010000010
........................................................................................TGCAA--AGTGAATAAAC--GAAACG.............................................................................................................................................................................................................................................2211.0010000010
...............................................................TT------TCCG-TCTAAGCTTAAGTGCAA--AG..............................................................................................................................................................................................................................................................2511.0010001000
..................................................G-TAG-----AGTTT------TCCG-TCTAAGCTTA.........................................................................................................................................................................................................................................................................2311.0011000000
.................................................AG-TAG-----AGTTT------TCCG-TCTAAGCT...........................................................................................................................................................................................................................................................................2211.0010000100
................................................AAG-TAG-----AGTTT------TCCG-TCTAAGCTTA.........................................................................................................................................................................................................................................................................2511.0010000100
...............................................TAAG-TAG-----AGTTT------TCCG-TCTAAGCT...........................................................................................................................................................................................................................................................................2411.0010100000
.................................................................................................................GTGCAGTTCGG-----A-----------AGTGAT............................................................................................................................................................................................................1811.0010000010
................................................AAG-TAG-----AGTTT------TCCG-TCTA...............................................................................................................................................................................................................................................................................1911.0010000010
............................................................................................................................................................................................................................................................................................................TCCCGATGAAGAGG------AGAAG---AAGGAGG------AA........2811.0011000000
.....TCTGGATGCCATACCGGATG......................................................................................................................................................................................................................................................................................................................................2011.0010001000
...............ATACCGGATGAGAAAACGAACT..........................................................................................................................................................................................................................................................................................................................2211.0010000100
......................................................G-----AGTTT------TCCG-TCTAAGCTT..........................................................................................................................................................................................................................................................................1911.0011000000
.........................................................................................GCAA--AGTGAATAAAC--GAAACGTGCAGT.......................................................................................................................................................................................................................................2711.0010100000
...GGTCTGGATGCCATACCGGATGAGAA..................................................................................................................................................................................................................................................................................................................................2611.0010000100
........GGATGCCATACCGGATGAG....................................................................................................................................................................................................................................................................................................................................1911.0010000010
..............................................................................................................AACGTGCAGTTCGG-----A-----------AGTGAT............................................................................................................................................................................................................2111.0010001000
......................................ATTTTA-ATTAAG-TAG-----AGTTT------TCCG-C..................................................................................................................................................................................................................................................................................2511.0010100000
.....................................................................................................................AGTTCGG-----A-----------AGTGATAGTTC--------T..............................................................................................................................................................................................2020.5010001000
..............................................................................................................AACGTGCAGTTCGG-----A-----------AAA...............................................................................................................................................................................................................1880.1310000010
droYak3
CAGGGTCTGGATGCCATACCGGATGAGAAAACAAACTAATTTTA-ATTAAG-TAA-----AGTTT------TCCG-TCTAAGCTTAAGTGCAA-AAGTGAATAAAC--GAAACGTGCAGTTCGG-----A-----------AGTGATAGTTG--------AAATGGTCGTCTTTGA-------------------------GT--TTTTCCTGTAGTTCTTC---ACAGATTG-GTA--TG-CTGCCTCAGGTGT----AAAGCTT------CTT--TTTCTATAGGGACTCGAGCAGATTCCCGATGAAGAGG------AGAAG---AAGGAGG------AAAAGGATCCSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
........GGATGCCATACCGGATGAGAAAACA..............................................................................................................................................................................................................................................................................................................................2513.00300000030000
........GGATGCCATACCGGATGAGAA..................................................................................................................................................................................................................................................................................................................................2113.00301000020000
......CTGGATGCCATACCGGATGAGA...................................................................................................................................................................................................................................................................................................................................2212.00200010010000
..............CATACCGGATGAGAAAACAAACT..........................................................................................................................................................................................................................................................................................................................2312.00200100010000
..............................................................................................................AACGTGCAGTTCGG-----A-----------AGTGATAGT.........................................................................................................................................................................................................2412.00200000020000
........GGATGCCATACCGGATGAGAAA.................................................................................................................................................................................................................................................................................................................................2212.00200000020000
................TACCGGATGAGAAAACAAACT..........................................................................................................................................................................................................................................................................................................................2112.00200000020000
...........TGCCATACCGGATGAGAAAACA..............................................................................................................................................................................................................................................................................................................................2211.00100000010000
......CTGGATGCCATACCGGATGAGAAAA................................................................................................................................................................................................................................................................................................................................2511.00100000010000
............................................................................................................GAAACGTGCAGTTCGG-----A-----------AGTGATAGT.........................................................................................................................................................................................................2611.00100000010000
...............ATACCGGATGAGAAAACAAACT..........................................................................................................................................................................................................................................................................................................................2211.00110000000000
............GCCATACCGGATGAGAAAA................................................................................................................................................................................................................................................................................................................................1911.00101000000000
.........GATGCCATACCGGATGAGAA..................................................................................................................................................................................................................................................................................................................................2011.00101000000000
..............................................................................................................AACGTGCAGTTCGG-----A-----------AGTGATA...........................................................................................................................................................................................................2211.00101000000000
.........GATGCCATACCGGATGAG....................................................................................................................................................................................................................................................................................................................................1811.00100100000000
.......................................................................................................AAC--GAAACGTGCAGTTCGG-----A-----------AGTG..............................................................................................................................................................................................................2411.00100000010000
..........ATGCCATACCGGATGAGAAAACAAACTA.........................................................................................................................................................................................................................................................................................................................2811.00100000010000
.................................................................................................................GTGCAGTTCGG-----A-----------AGTGATAGTTG--------A..............................................................................................................................................................................................2411.00100000010000
...............ATACCGGATGAGAAAACAAAC...........................................................................................................................................................................................................................................................................................................................2111.00100000010000
....................GGATGAGAAAACAAACTAATTTTA-ATT...............................................................................................................................................................................................................................................................................................................2711.00100100000000
..............CATACCGGATGAGAAAACAAA............................................................................................................................................................................................................................................................................................................................2111.00110000000000
................................................................................................................CGTGCAGTTCGG-----A-----------AGTGATA...........................................................................................................................................................................................................2011.00101000000000
.................ACCGGATGAGAAAACAAACT..........................................................................................................................................................................................................................................................................................................................2011.00100000010000
......CTGGATGCCATACCGGATGA.....................................................................................................................................................................................................................................................................................................................................2011.00101000000000
.............................................................................................................AAACGTGCAGTTCGG-----A-----------AGTGA.............................................................................................................................................................................................................2111.00100000010000
...GGTCTGGATGCCATACCGGATGAGA...................................................................................................................................................................................................................................................................................................................................2511.00101000000000
........GGATGCCATACCGGATGAGAAAA................................................................................................................................................................................................................................................................................................................................2311.00100000010000
..................................................G-TAA-----AGTTT------TCCG-TCTAAGCC...........................................................................................................................................................................................................................................................................2111.00100100000000
........................................................................................................AC--GAAACGTGCAGTTCGG-----A-----------AGTGA.............................................................................................................................................................................................................2411.00100000010000
...................................................................................................................................................................................................................................................................................................CGAGCAGATTCCCGATGAA.........................................1911.00100000010000
...................................CTAATTTTA-ATTAAG-TAA-----AGTT...............................................................................................................................................................................................................................................................................................2211.00100100000000
...........TGCCATACCGGATGAGAAAACAAACT..........................................................................................................................................................................................................................................................................................................................2611.00100100000000
..............CATACCGGATGAGAAAACAAACTA.........................................................................................................................................................................................................................................................................................................................2411.00101000000000
.......TGGATGCCATACCGGATGAG....................................................................................................................................................................................................................................................................................................................................2011.00100000010000
.........GATGCCATACCGGATGAGAAAACAAA............................................................................................................................................................................................................................................................................................................................2611.00100000010000
.................................................................................................................GTGCAGTTCGG-----A-----------AGTGATA...........................................................................................................................................................................................................1911.00100000010000
......CTGGATGCCATACCGGATGAGAA..................................................................................................................................................................................................................................................................................................................................2311.00101000000000
.........................................................................................................C--GAAACGTGCAGTTCGG-----A-----------AGT...............................................................................................................................................................................................................2111.00101000000000
........GGATGCCATACCGGATGAGA...................................................................................................................................................................................................................................................................................................................................2011.00101000000000
..................................................................................................................TGCAGTTCGG-----A-----------AGTGATAGTTG--------AAA............................................................................................................................................................................................2511.00100000010000
............GCCATACCGGATGAGAAAACAAACTA.........................................................................................................................................................................................................................................................................................................................2611.00100000010000
......CTGGATGCCATACCGGATGAGAAA.................................................................................................................................................................................................................................................................................................................................2411.00100100000000
..................................................................................................................TGCAGTTCGG-----A-----------AGTGATAGT.........................................................................................................................................................................................................2011.00100000010000
....................................................................................................ATAAAC--GAAACGTGCAGTT......................................................................................................................................................................................................................................1911.00100000010000
............GCCATACCGGATGAGAAAACAA.............................................................................................................................................................................................................................................................................................................................2211.00100000010000
.........GATGCCATACCGGATGAGA...................................................................................................................................................................................................................................................................................................................................1911.00100010000000
.......TGGATGCCATACCGGATGAGA...................................................................................................................................................................................................................................................................................................................................2111.00100000010000
.......TGGATGCCATACCGGATGAGAAA.................................................................................................................................................................................................................................................................................................................................2311.00100000010000
...............................................................................................AGTGAATAAAC--GAAACGTGCAGTTCG....................................................................................................................................................................................................................................2611.00100000010000
..............................................................................TAAGCTTAAGTGCAA-AAGTGAATAAAC--...................................................................................................................................................................................................................................................2711.00100000010000
......................................ATTTTA-ATTAAG-TAA-----AGTTT------TCCG-T..................................................................................................................................................................................................................................................................................2511.00100000010000
.......TGGATGCCATACCGGATGAGAAAAC...............................................................................................................................................................................................................................................................................................................................2511.00100010000000
..........ATGCCATACCGGATGAGAAAAC...............................................................................................................................................................................................................................................................................................................................2211.00100000010000
..................................................................................................GAATAAAC--GAAACGTGCAGTTCGG-----A-----------AGT...............................................................................................................................................................................................................2811.00100000010000
......CTGGATGCCATACCGGATGAG....................................................................................................................................................................................................................................................................................................................................2111.00100000010000
.........................................TTA-ATTAAG-TAA-----AGTTT------TCCG-T..................................................................................................................................................................................................................................................................................2211.00101000000000
.........................................TTA-ATTAAG-TAA-----AGTTT------TCCG-TCTA...............................................................................................................................................................................................................................................................................2511.00100000010000
...................................................................................TTAAGTGCAA-AAGTGAATAAAC--GAAA...............................................................................................................................................................................................................................................2611.00100000010000
.......................................................................................................AAC--GAAACGTGCAGTTCGG-----A-----------AGTGAT............................................................................................................................................................................................................2611.00101000000000
...............................................................TT------TCCG-TCTAAGCTTAAGTGCAA-AAGTG............................................................................................................................................................................................................................................................2811.00100000010000
...................................CTAATTTTA-ATTAAG-TAA-----AGTTT------TCCG-T..................................................................................................................................................................................................................................................................................2811.00100000010000
...................................................................................TTAAGTGCAA-AAGTGAATAAA......................................................................................................................................................................................................................................................2111.00100010000000
.........GATGCCATACCGGATGAGAAAACAAAC...........................................................................................................................................................................................................................................................................................................................2711.00100100000000
................................................................................................................CGTGCAGTTCGG-----A-----------AGTGATAGT.........................................................................................................................................................................................................2211.00100000010000
...........................................................................................................................G-----A-----------AGTGATAGTTG--------AAAAA..........................................................................................................................................................................................18130.08100100000000
droEug1
CAGGGTCTCGATGCCATACCAGATGAGAAAACCAATTAATTTAA-ATTAAG-TGA-----AGTTT------TCCG-TTTAAGCTTAAGTGCAA-AAGTGAATAAAC--GAAACGCTTAGTTGGG-----A-----------AGTGATAGTTG--------ATATGGTTGTTTTTAA-------------------------GT--TTTTCCTGTAGTTTTCCTACACAGCTTTAA--T-TTCCCTGGTCAGGTGT--GTAAAGCC-------CTT--TTATTTTAGGGACTTGAACAAATTCCTGATGAAGAAG------AAAAG---GTGGAGG------AAAGGGATCCSizeHit CountTotal NormTotal
No Reads
droBia1
CAGGGTCTGGATGCTATACCGGATGAGAAAACTAATTAAATGTA-TTTAAG-TGA-----AGTTT------TCCG-TTTAAGCTTAAGTGCAA-AAGTGAATAAAC--GAAACGTATAGTTGGA-----A-----------AGTGATAGTTG--------AATTGGTCGCATTTTA-------------------------GT--TTTCCCTGTAGTTTTCC---ACAGATGTGT-TTTTC-CCTGCTTTGGTGT----AAAGACC------CTT--TCTTTCCAGGGACTTGAACAAATTCCCGATGAAGAGG------AGAAG---AAGGACG------AGAAGGATCCSizeHit CountTotal NormTotal
No Reads
droTak1
CAGGGTCTGGATGCTATACCGGATGAGAAAACTAAATAAAT-----TTAAG-TAA-----AGTTT------TCCCTTTTAAGCTTAAGTGCAA-AAGTGAATAAA-------------ATTCGG-----A-----------AGTGATAGTTG--------AATGGGTCGTGCTTGA-------------------------GT--TTTTCCTGTAGTTTTCC---ACAGATTTGT-T--TC-CCTGCCCAGGTGT----AAAGACC------CT---TTTTTTTAGGGACTTGAACAAATTCCCGATGAAGAGG------AGAAG---AAGGATG------AAAAGGACCCSizeHit CountTotal NormTotal
No Reads
droEle1
CAGGGTCTGGATGCCATACCGGATGAGAAAACTAAATAATTTGA-ATTAAG-TAA-----AGTTT------TCCG-TTTAAGCTTAAGTGCAA-AAGTGAATAAAC--GAAACGTTTAGTTGGG-----A-----------AGT------CG--------AATAGCTTGTTTCTGA-------------------------GT--TTTCCTTGTAGTGTTTTT--TCAGAGTTCT----TG-CCCTCTCATGTGT--GTAAAGCCCT-----ATT--TCTTTTTAGGGACTTGAACAAATTCCCGATGAGGAGG------AGGACAATAAGGATC------AAAGGGATCASizeHit CountTotal NormTotal
No Reads
droRho1
CAGGGTCTGGACGCCATACCGGATGAGAAAACTAATTAATTTGA-ATTAAG-TAA-----AGTTT------TCCG-TTTAAGCTTAAGTGCAA-AAGTGAATAAAC--GAAACGTATAGTTGGG-----A-----------AGTGATAGTTG--------AATTGGTCGTCTCTGA-------------------------GT--TTCTCCTGTAGTTTTTTTT-ACAGAGTTTT----TGCCCTGCTCAGGTGT----AAAGCTA------CTT--TCTTTTTAGGGACTTGAGCAAATTCCTGATGAAGAAG------AGGAA---AAGGAAC------AAA------TSizeHit CountTotal NormTotal
No Reads
droFic1
CAGGGTCTGGATGCCATACCGGATGAGAAAA---AATAATTCGA-TTTAAG-TGA-----AGTTT------TCCG-ATTAAGCTTAAGTGCAA-AAGTGAATAAAT--AAAACGTATAGTTCGG-----A-----------AGTGATAGTTG--------AA-TGGTCGTTTTTGC-------------------------GT--TTTTCCTGTAGTTTTCC---CT-GAGTTTC----TG-TCCACTGAGATGT----AAACCCCG-----AAA--TCTTTTTAGGGACTTGAACAAATTCCCGATGAAGAGG------AAGAT---AAGGATC------GAAAGGATCCSizeHit CountTotal NormTotal
No Reads
droKik1
CAGGGTCTGGATGCCATACCGGATGAGAAAAAGAACTAGTTTGA-ATTAAG-TCA-----AATTT------TTC--TTTAAACTTAAGGGCAA-AAGTGAATAAAC--GAAGCGTTTAGTGCGA-----A-----------AGTGATAGTTC--------AATTGGTGGCCTTTGT---------------AG----A---GT--TTTTCCTGTAGTTTCCC---TCTTAGTTTC----T----CCCT-CGGTGT--ACAGAGCC-------ATT--TCTTTCTAGGGACTCGAGCAAATTCCTGATGAAGAGG------AGGACCAGAAGGATA------ATCAGGAATGSizeHit CountTotal NormTotal
No Reads
droAna3
CAGGGTCTGGATGCCATACCGGATGAGAAG---AAATAGGTTGA-ATTAAG-TAC-----A-TTT------TTCG-ATTAAGCTTAAGTGCAA-AAGTGAATAAAT--GAAACGTATAGTGCGG-----A-----------AGTGAAAGTCT--------CTCGAGTGGTTTTAG--------------------------AT--TTTTCCTGTAGTCCTCT---TCCGATTTGG----T-----CCTTGGGTGT----ATAGCT-------ATT--TAATTCCAGGGTCTTGAAGAAATTCCCGAGGAGGAGG------AAAAG---AAAGAAG---AGGAACAGCAGGASizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
.........GATGCCATACCGGATGAGAA..................................................................................................................................................................................................................................................................................................................................2012.002000020
.........................................................................................................T--GAAACGTATAGTGCGG-----A-----------AGTGAAAAAA........................................................................................................................................................................................................2812.002000002
.........................................................................CG-ATTAAGCTTAAGTGCAA-AAGTGAAT.........................................................................................................................................................................................................................................................2712.002020000
..............................................................................................................AACGTATAGTGCGG-----A-----------AGTGAAAA..........................................................................................................................................................................................................2312.002000002
............................................................................................................GAAACGTATAGTGCGG-----A-----------AGTG..............................................................................................................................................................................................................2112.002000002
......CTGGATGCCATACCGGATGAGAA..................................................................................................................................................................................................................................................................................................................................2312.002010001
............................................................................................................GAAACGTATAGTGCGG-----A-----------AGT...............................................................................................................................................................................................................2012.002000020
............................................................................................................GAAACGTATAGTGCGG-----A-----------AGTGAAA...........................................................................................................................................................................................................2411.001000010
.............................................................................TTAAGCTTAAGTGCAA-AAGTGA...........................................................................................................................................................................................................................................................2211.001000010
........GGATGCCATACCGGATGAGAAG---A.............................................................................................................................................................................................................................................................................................................................2311.001000010
..............................................................TTT------TTCG-ATTAAGCTTAAGTGCAA-AAGT.............................................................................................................................................................................................................................................................2811.001000010
..........ATGCCATACCGGATGAGA...................................................................................................................................................................................................................................................................................................................................1811.001000001
......CTGGATGCCATACCGGATGAGAAG---A.............................................................................................................................................................................................................................................................................................................................2511.001000010
.........................................................................................................T--GAAACGTATAGTGCGG-----A-----------AGTGAAAA..........................................................................................................................................................................................................2611.001000100
..........ATGCCATACCGGATGAGAA..................................................................................................................................................................................................................................................................................................................................1911.001000010
............GCCATACCGGATGAGAAG---..............................................................................................................................................................................................................................................................................................................................1811.001000001
......................................................................................................AAAT--GAAACGTATAGTGCGG-----A-----------AGT...............................................................................................................................................................................................................2411.001010000
.............................................................................................................AAACGTATAGTGCGG-----A-----------AGTGAAAAAA........................................................................................................................................................................................................2611.001000010
........GGATGCCATACCGGATGAG....................................................................................................................................................................................................................................................................................................................................1911.001000010
......CTGGATGCCATACCGGATGAGAAG---..............................................................................................................................................................................................................................................................................................................................2411.001010000
............................................................................................A-AAGTGAATAAAT--GAAACGTATAGC.......................................................................................................................................................................................................................................2511.001010000
...............................................................................................................ACGTATAGTGCGG-----A-----------AGTGAAAA..........................................................................................................................................................................................................2211.001000001
........................................................................................................AT--GAAACGTATAGTGCGG-----A-----------A.................................................................................................................................................................................................................2011.001010000
...............................................................................................................ACGTATAGTGCGG-----A-----------AGTGAAAAA.........................................................................................................................................................................................................2311.001000001
.....................................................................................AAGTGCAA-AAGTGAATAAAT--GAAACG.............................................................................................................................................................................................................................................2611.001000010
...............ATACCGGATGAGAAG---AAAT..........................................................................................................................................................................................................................................................................................................................1911.001100000
...................................ATAGGTTGA-ATTAAG-TAC-----A-TT...............................................................................................................................................................................................................................................................................................2111.001000010
.................ACCGGATGAGAAG---AAATA.........................................................................................................................................................................................................................................................................................................................1811.001100000
......CTGGATGCCATACCGGATGAGA...................................................................................................................................................................................................................................................................................................................................2211.001100000
...............ATACCGGATGAGAAG---AAATAGGTTGA-..................................................................................................................................................................................................................................................................................................................2611.001100000
.......................................................................................................AAT--GAAACGTATAGTGCGG-----A-----------AGTG..............................................................................................................................................................................................................2411.001000001
....................................TAGGTTGA-ATTAAG-TAC-----A-TTT------TTCG-AT.................................................................................................................................................................................................................................................................................2711.001000001
.........................................................................CG-ATTAAGCTTAAGTGCAA-AAGTGA...........................................................................................................................................................................................................................................................2511.001000010
...............ATACCGGATGAGAAG---AAA...........................................................................................................................................................................................................................................................................................................................1811.001100000
.................................................AG-TAC-----A-TTT------TTCG-ATTAAGCT...........................................................................................................................................................................................................................................................................2111.001000010
.......TGGATGCCATACCGGATGAGA...................................................................................................................................................................................................................................................................................................................................2111.001000010
droBip1
CAGGGTCTGGATGCCATACCGGATGAGAAAAAGGAATAGGTTGA-ATTAAG-TAA-----AACTT------TTCG-ATTAAGCTTAAGTGCAA-AAGTGAATAAAT--GAAACATTTAGTGCGA-----A-----------AGTGAAAGCTC--------CTTGGCTCGTTTTA---------------------------GA--TTCTCCTGTAGTCCTTC---TTCGGCGTAT-TT-T-----GCTTGGGTGT----ATAGCT-------ATT--TCATTGCAGGGTCTTGAAGAAATTCCCGATGAGGAGG------AAAAG---AAACAAG---AGGAGCCGCAGGASizeHit CountTotal NormTotal
No Reads
dp5
CAGGGCCTCGATGCCATACCAGACGAGAAGAAGGAATAAGTTGA-TCTAAG-TGA-----AATTT------CT---TTAAAACTTAAGTGCAA-AAGTGAATAAAC-------GTAAAGTGCGG-----A-----------AGTGAAAGAT------------TGGTCGTTGTAGA-------------------------G---TTTTCCTGTAGTTTTCC---TTCCA-------T-T-----GCCCAGATCTATACCCAGCCCTC----TTC--TCTTCCTAGGGACTTGACGCCATTCCCGATGATGAAG------AA-----------------------------SizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
...............ATACCAGACGAGAAGAAGGA............................................................................................................................................................................................................................................................................................................................2013.0030200100000
..............................................................TTT------CT---TTAAAACTTAAGTGCAA-AAGT.............................................................................................................................................................................................................................................................2612.0020020000000
...GGCCTCGATGCCATACCAGACGAGA...................................................................................................................................................................................................................................................................................................................................2512.0020200000000
................................................................................................GTGAATAAAC-------GTAAAGTGCGG-----A-----------AGTG..............................................................................................................................................................................................................2612.0020100001000
............................AGAAGGAATAAGTTGA-TCT...............................................................................................................................................................................................................................................................................................................1912.0020110000000
...................CAGACGAGAAGAAGGAAT..........................................................................................................................................................................................................................................................................................................................1811.0010100000000
...................................ATAAGTTGA-TCTAAG-TGA-----AA.................................................................................................................................................................................................................................................................................................2011.0010100000000
...........TGCCATACCAGACGAGAAGAAGG.............................................................................................................................................................................................................................................................................................................................2311.0010100000000
.................................................................................................TGAATAAAC-------GTAAAGTGC.....................................................................................................................................................................................................................................1811.0010010000000
....................................TAAGTTGA-TCTAAG-TGA-----AATT...............................................................................................................................................................................................................................................................................................2111.0010000001000
...........TGCCATACCAGACGAGAAGAAGGA............................................................................................................................................................................................................................................................................................................................2411.0010100000000
................TACCAGACGAGAAGAAGGAAT..........................................................................................................................................................................................................................................................................................................................2111.0010000001000
..................................................................................CTTAAGTGCAA-AAGTGAATAAA......................................................................................................................................................................................................................................................2211.0010000100000
.........................................................................................................C-------GTAAAGTGCGG-----A-----------AGTGAAA...........................................................................................................................................................................................................2011.0010100000000
....................................................................................................ATAAAC-------GTAAAGTGCGG-----A-----------A.................................................................................................................................................................................................................1911.0010010000000
............GCCATACCAGACGAGAAGAAGGA............................................................................................................................................................................................................................................................................................................................2311.0010100000000
.............................GAAGGAATAAGTTGA-TCTAAG-...........................................................................................................................................................................................................................................................................................................2111.0010010000000
........................GAGAAGAAGGAATAAGTT.....................................................................................................................................................................................................................................................................................................................1811.0010100000000
..............................AAGGAATAAGTTGA-TCTAAG-TG.........................................................................................................................................................................................................................................................................................................2211.0010000010000
............................................................................TTAAAACTTAAGTGCAA-AAGTGA...........................................................................................................................................................................................................................................................2311.0010100000000
......................................................A-----AATTT------CT---TTAAAACTTAAGTGCA...................................................................................................................................................................................................................................................................2411.0010001000000
...................................................................................................AATAAAC-------GTAAAGTGCGG-----A-----------AGTGA.............................................................................................................................................................................................................2411.0010000001000
........................................................................................................AC-------GTAAAGTGCGG-----A-----------AGTG..............................................................................................................................................................................................................1811.0010100000000
........................................................................................................AC-------GTAAAGTGCGG-----A-----------AGTGAA............................................................................................................................................................................................................2011.0010100000000
..................................................................................................GAATAAAC-------GTAAAGTGCGG-----A-----------A.................................................................................................................................................................................................................2111.0010100000000
.................................................................................ACTTAAGTGCAA-AAGTGAATA........................................................................................................................................................................................................................................................2111.0010000010000
.................................................................................................TGAATAAAC-------GTAAAGTGCGG-----A-----------AGTG..............................................................................................................................................................................................................2511.0010100000000
......................ACGAGAAGAAGGAATAAGTTGA-..................................................................................................................................................................................................................................................................................................................2211.0010100000000
...............ATACCAGACGAGAAGAAGG.............................................................................................................................................................................................................................................................................................................................1911.0010000001000
..................................................................................................................TAAAGTGCGG-----A-----------AGTGAAAA..........................................................................................................................................................................................................1920.5010000001000
...................................................................................................................AAAGTGCGG-----A-----------AGTGAAAA..........................................................................................................................................................................................................1840.2510000100000
droPer2
CAGGGCCTCGATGCCATACCAGACGAGAAGAAGGAATAAGTTGA-TCTAAG-TGA-----AATTT------CT---TTAAAACTTAAGTGCAA-AAGTGAATAAAC-------GTAAAGTGCGG-----A-----------AGTGAAAGAT------------TGGTCGTTGTAGA-------------------------G---TTTTCCTGTAGTTTTCC---TTCCA-------T-T-----GCCCAGATCTATACCCAGCCCTC----TTC--TCTTCCTAGGGACTTGACGCCATTCCCGATGATGAAG------AA-----------------------------SizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
..................................................................................................GAATAAAC-------GTAAAGTGCGG-----A-----------AGT...............................................................................................................................................................................................................2313.003300000
.................................................................................................................GTAAAGTGCGG-----A-----------AGTGAAAA..........................................................................................................................................................................................................2013.003000003
...................................ATAAGTTGA-TCTAAG-TGA-----...................................................................................................................................................................................................................................................................................................1813.003300000
...............ATACCAGACGAGAAGAAGGA............................................................................................................................................................................................................................................................................................................................2012.002001001
................................................................................................GTGAATAAAC-------GTAAAGTGCGG-----A-----------..................................................................................................................................................................................................................2212.002200000
...............................................................................................................................................................................................................TTCCTGTAGTTTTCC---TTCCA-------T-T-----GCCCAG....................................................................................................2812.002200000
.....................................AAGTTGA-TCTAAG-TGA-----AAT................................................................................................................................................................................................................................................................................................1912.002200000
.................ACCAGACGAGAAGAAGGAATA.........................................................................................................................................................................................................................................................................................................................2112.002000002
.................................................................................................................GTAAAGTGCGG-----A-----------AGTGAAA...........................................................................................................................................................................................................1912.002000002
.............................GAAGGAATAAGTTGA-TCTAAG-TGA-----AA.................................................................................................................................................................................................................................................................................................2611.001000001
................................................................................................GTGAATAAAC-------GTAAAGTGCGG-----A-----------AGT...............................................................................................................................................................................................................2511.001000001
...................................................................................................................................................................TGGTCGTTGTAGA-------------------------G---TTTTCCTGTAGTT.....................................................................................................................................2711.001000001
..................................................................................CTTAAGTGCAA-AAGTGAATA........................................................................................................................................................................................................................................................2011.001010000
......................................AGTTGA-TCTAAG-TGA-----AATTT------C.......................................................................................................................................................................................................................................................................................2111.001000001
.................ACCAGACGAGAAGAAGGAAT..........................................................................................................................................................................................................................................................................................................................2011.001000001
.....................................AAGTTGA-TCTAAG-TGA-----AATT...............................................................................................................................................................................................................................................................................................2011.001100000
.......................CGAGAAGAAGGAATAAGT......................................................................................................................................................................................................................................................................................................................1811.001010000
...................................................................................................................................................AGAT------------TGGTCGTTGTAGA-------------------------A---..................................................................................................................................................1811.001100000
......................................AGTTGA-TCTAAG-TGA-----AATTT------........................................................................................................................................................................................................................................................................................2011.001000001
...GGCCTCGATGCCATACCAGACGAGAAGA................................................................................................................................................................................................................................................................................................................................2811.001010000
.......................................................................................................AAC-------GTAAAGTGCGG-----A-----------AGT...............................................................................................................................................................................................................1811.001100000
....................................TAAGTTGA-TCTAAG-TGA-----AATTT------CT---TTA................................................................................................................................................................................................................................................................................2711.001010000
......................................................................................................AAAC-------GTAAAGTGCGG-----A-----------AGTGAAAA..........................................................................................................................................................................................................2411.001000001
................................................................................................................................................GAAAGAT------------TGGTCGTTGTAGA-------------------------G---TTTTCCT...........................................................................................................................................2811.001000001
........................GAGAAGAAGGAATAAGTTGA-TCT...............................................................................................................................................................................................................................................................................................................2311.001000001
...............ATACCAGACGAGAAGAAGGAATA.........................................................................................................................................................................................................................................................................................................................2311.001010000
............................................................................................A-AAGTGAATAAAC-------GTAAAGTGCGG-----A-----------A.................................................................................................................................................................................................................2611.001000001
..................................................................................................................TAAAGTGCGG-----A-----------AGTGAAA...........................................................................................................................................................................................................1811.001010000
......................................AGTTGA-TCTAAG-TGA-----AATTT------CT---TTAA...............................................................................................................................................................................................................................................................................2611.001010000
...............ATACCAGACGAGAAGAAGGAATAAGT......................................................................................................................................................................................................................................................................................................................2611.001000001
...................CAGACGAGAAGAAGGAATA.........................................................................................................................................................................................................................................................................................................................1911.001000001
......................................................................................................AAAC-------GTAAAGTGCGG-----A-----------AGT...............................................................................................................................................................................................................1911.001100000
..................................................................................................................TAAAGTGCGG-----A-----------AGTGAAAA..........................................................................................................................................................................................................1920.501000001
droWil2
CAGGGTCTCGAATCGATACCAGATGAGAAAAAGAATTAATTTTA-AAAAAA-TTACTGCAAATGTGTTGATTGAT-TTAAATTTTAAGTGCAAAAAGTGAATAAATCAGAAA---------CTA-----A-----------AGTGAGATTTT--------AAGAGTTTACT------------------TCATGGAGAAGCGC--CCTTTTT-----------------------------------------------------T------TGT--TTTTTACAGGGTCTAGAGTCAATATCCGATGAAAATCGCGATGAGGAG---AACGATCAAACGGCCAAGGAGGASizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
.............CGATACCAGATGAGAAAAAGA.............................................................................................................................................................................................................................................................................................................................2115.00500320
....................................................................................................ATAAATCAGAAA---------CTA-----A-----------AGT...............................................................................................................................................................................................................1915.00500140
................................................................................................GTGAATAAATCAGAAA---------CTA-----A-----------AGT...............................................................................................................................................................................................................2314.00400220
.....................................................................................AAGTGCAAAAAGTGAATAAAT.....................................................................................................................................................................................................................................................2113.00300120
..................................................A-TTACTGCAAATGTGTTGATTGAT-...................................................................................................................................................................................................................................................................................2413.00300030
...............................................................................................AGTGAATAAATCAGAAA---------CTA-----A-----------AGTGA.............................................................................................................................................................................................................2613.00301020
.............................................................ATGTGTTGATTGAT-TTAAAT.............................................................................................................................................................................................................................................................................2012.00200020
......................................................ACTGCAAATGTGTTGATTGA.....................................................................................................................................................................................................................................................................................2012.00200020
............................................................................TTAAATTTTAAGTGCAAAAA...............................................................................................................................................................................................................................................................2012.00200020
.....................................................................................AAGTGCAAAAAGTGAATAAATCAG..................................................................................................................................................................................................................................................2412.00200020
.............................................................ATGTGTTGATTGAT-TTAAA..............................................................................................................................................................................................................................................................................1912.00200020
...................................................................................TTAAGTGCAAAAAGTGAATAAAT.....................................................................................................................................................................................................................................................2312.00200110
....................................................................................TAAGTGCAAAAAGTGAATAAAT.....................................................................................................................................................................................................................................................2212.00200020
..............................................................................................AAGTGAATAAATCAGAAA---------CTA-----A-----------AGT...............................................................................................................................................................................................................2512.00200110
..................................................................................TTTAAGTGCAAAAAGTGAAT.........................................................................................................................................................................................................................................................2012.00200020
.................................................AA-TTACTGCAAATGTGTTGATT.......................................................................................................................................................................................................................................................................................2212.00200020
.....................................................................................AAGTGCAAAAAGTGAATAAATCAGAA................................................................................................................................................................................................................................................2611.00100010
............................................................................................AAAAGTGAATAAATCAGAAA---------CTA-----A-----------AGT...............................................................................................................................................................................................................2711.00100010
..................................................A-TTACTGCAAATGTGTTGAT........................................................................................................................................................................................................................................................................................2011.00100010
....................................................................................................ATAAATCAGAAA---------CTA-----A-----------AGTG..............................................................................................................................................................................................................2011.00101000
..........................................................CAAATGTGTTGATTGAT-TTAAA..............................................................................................................................................................................................................................................................................2211.00100010
..................................................A-TTACTGCAAATGTGTTGATT.......................................................................................................................................................................................................................................................................................2111.00100010
.................ACCAGATGAGAAAAAGAATT..........................................................................................................................................................................................................................................................................................................................2011.00101000
........CGAATCGATACCAGATGAG....................................................................................................................................................................................................................................................................................................................................1911.00100010
....................................................TTACTGCAAATGTGTTGATTGA.....................................................................................................................................................................................................................................................................................2211.00100010
.....TCTCGAATCGATACCAGATGAG....................................................................................................................................................................................................................................................................................................................................2211.00100100
..................................................A-TTACTGCAAATGTGTTGATTGA.....................................................................................................................................................................................................................................................................................2311.00100010
............................................................AATGTGTTGATTGAT-TTAA...............................................................................................................................................................................................................................................................................1911.00100010
......................................................................................AGTGCAAAAAGTGAATAAATCAGA.................................................................................................................................................................................................................................................2411.00100010
...............................................................GTGTTGATTGAT-TTAAAT.............................................................................................................................................................................................................................................................................1811.00100010
....................................................................................TAAGTGCAAAAAGTGAATAAATCAGA.................................................................................................................................................................................................................................................2611.00100100
.....................................................................................AAGTGCAAAAAGTGAATA........................................................................................................................................................................................................................................................1811.00100010
.......................................................CTGCAAATGTGTTGATTGAT-...................................................................................................................................................................................................................................................................................2011.00100010
..................................................................................TTTAAGTGCAAAAAGTGAATAAATCAG..................................................................................................................................................................................................................................................2711.00100100
....................................................................GATTGAT-TTAAATTTTAAGT......................................................................................................................................................................................................................................................................2011.00100010
............................................................................TTAAATTTTAAGTGCAAAAAGTGA...........................................................................................................................................................................................................................................................2411.00100010
..............GATACCAGATGAGAAAAAGAA............................................................................................................................................................................................................................................................................................................................2111.00100010
....................................................TTACTGCAAATGTGTTGATT.......................................................................................................................................................................................................................................................................................2011.00100010
................................................................................................................................................................................................................................................................................................................GATGAAAATCGCGATGAGGA...........................2011.00100100
.........GAATCGATACCAGATGAGAAAAAGA.............................................................................................................................................................................................................................................................................................................................2511.00100010
...............................................................................................AGTGAATAAATCAGAAA---------CTA-----A-----------AGT...............................................................................................................................................................................................................2411.00100100
..................................................................TTGATTGAT-TTAAATTTTAAGT......................................................................................................................................................................................................................................................................2211.00100010
..................................................................................TTTAAGTGCAAAAAGTGAATAAATC....................................................................................................................................................................................................................................................2511.00100001
........................................................TGCAAATGTGTTGATTGAT-TTAAAT.............................................................................................................................................................................................................................................................................2511.00100010
.....................................................................................AAGTGCAAAAAGTGAATAAA......................................................................................................................................................................................................................................................2011.00100010
...................................................................................TTAAGTGCAAAAAGTGAAT.........................................................................................................................................................................................................................................................1911.00100100
................TACCAGATGAGAAAAAGA.............................................................................................................................................................................................................................................................................................................................1811.00100010
.......TCGAATCGATACCAGATGAGA...................................................................................................................................................................................................................................................................................................................................2111.00100100
...........................................................AAATGTGTTGATTGAT-TTAAATTTT..........................................................................................................................................................................................................................................................................2511.00100010
.........GAATCGATACCAGATGAGA...................................................................................................................................................................................................................................................................................................................................1911.00101000
..............GATACCAGATGAGAAAAAGA.............................................................................................................................................................................................................................................................................................................................2011.00100010
.....................GATGAGAAAAAGAATTAAT.......................................................................................................................................................................................................................................................................................................................1911.00100010
...................................................................................TTAAGTGCAAAAAGTGAATAAATC....................................................................................................................................................................................................................................................2411.00100010
........................................................................GAT-TTAAATTTTAAGTGCAAAA................................................................................................................................................................................................................................................................2211.00100010
..................................................................................TTTAAGTGCAAAAAGTGAATAAAT.....................................................................................................................................................................................................................................................2411.00100010
..........................................TA-AAAAAA-TTACTGCAAATGT..............................................................................................................................................................................................................................................................................................2111.00100010
................................................................................................GTGAATAAATCAGAAA---------CTA-----A-----------AGTGA.............................................................................................................................................................................................................2511.00100010
...............................................................................................AGTGAATAAATCAGAAA---------CTA-----A-----------AGTGAA............................................................................................................................................................................................................2711.00101000
.....................................................................ATTGAT-TTAAATTTTAAGTGCAAA.................................................................................................................................................................................................................................................................2411.00100010
.....................................................TACTGCAAATGTGTTGATT.......................................................................................................................................................................................................................................................................................1911.00100010
...............................................................................AATTTTAAGTGCAAAAAGTGAAT.........................................................................................................................................................................................................................................................2311.00100010
.............................................................................TAAATTTTAAGTGCAAAAAGTGAAT.........................................................................................................................................................................................................................................................2511.00100010
..................................................................................................GAATAAATCAGAAA---------CTA-----A-----------AGT...............................................................................................................................................................................................................2111.00100010
..............................................................................AAATTTTAAGTGCAAAAAGTGAAT.........................................................................................................................................................................................................................................................2411.00100010
....................................................TTACTGCAAATGTGTTGATTG......................................................................................................................................................................................................................................................................................2111.00100100
........................................................................................................ATCAGAAA---------CTA-----A-----------AGTGAGA...........................................................................................................................................................................................................1911.00100010
.............CGATACCAGATGAGAAAAAGAATTAAT.......................................................................................................................................................................................................................................................................................................................2711.00100010
........................................................................................TGCAAAAAGTGAATAAATC....................................................................................................................................................................................................................................................1911.00100010
.................................................AA-TTACTGCAAATGTGTTGATTGAT-...................................................................................................................................................................................................................................................................................2511.00100100
............................................................AATGTGTTGATTGAT-TTAAA..............................................................................................................................................................................................................................................................................2011.00100100
...........................................................AAATGTGTTGATTGAT-TTAAAT.............................................................................................................................................................................................................................................................................2211.00100010
.....................................................................................AAGTGCAAAAAGTGAATAAATCAGA.................................................................................................................................................................................................................................................2511.00100010
.......................................................CTGCAAATGTGTTGATTGAT-TTAAA..............................................................................................................................................................................................................................................................................2511.00100010
...................................................................................TTAAGTGCAAAAAGTGAATA........................................................................................................................................................................................................................................................2011.00100010
.....................................................TACTGCAAATGTGTTGATTGAT-TT.................................................................................................................................................................................................................................................................................2411.00100010
.....................................................................................AAGTGCAAAAAGTGAATAAATCAGAAA---------......................................................................................................................................................................................................................................2711.00100010
...........ATCGATACCAGATGAGAAAAAGA.............................................................................................................................................................................................................................................................................................................................2311.00100010
........................................................................GAT-TTAAATTTTAAGTGCAAAAAGTGA...........................................................................................................................................................................................................................................................2711.00100010
..............................AAGAATTAATTTTA-AAAAAA-TTA........................................................................................................................................................................................................................................................................................................2311.00100010
.....................................................TACTGCAAATGTGTTGATTGAT-T..................................................................................................................................................................................................................................................................................2311.00100010
..........................................................................................................CAGAAA---------CTA-----A-----------AGTGAGAA..........................................................................................................................................................................................................1820.50101000
droVir3
CAGGGTCTCCATGCTATACCAGATGAGTCTAAAAAATAAATGTA-ACGTAGTTGA-----AATT---------CT-GTTAAGCTTAAGTGCAAAAAGTGAATAAAT-------TTACAGTACGA-----A-----------ATTGAAAAGTT--------ATATCTTTTAGTTAGG------GTTTTTTTTAGCAGGTTGCGC--TCGTTTAGTAGTTTCGT---AGAATCTA-GTG--TC-TATTACCGATTCT----CAAGGGC------ATT--TATTTACAGGGCCTGGAAGAGATTGAGGACGAAGAAG------AAGAG---AAGAA---------AAAGGAAGASizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
............................................................................GTTAAGCTTAAGTGCAAAA................................................................................................................................................................................................................................................................1914.004000000000000000003010000000000000000000000000000000000000000000
................................................................................AGCTTAAGTGCAAAAAGTG............................................................................................................................................................................................................................................................1912.002000000000000000001000000000000000000000000000000000000000000100
..........ATGCTATACCAGATGAGTCTAAAA.............................................................................................................................................................................................................................................................................................................................2411.001000000000000000000000000000000000100000000000000000000000000000
.........................................................................CT-GTTAAGCTTAAGTGCAAA.................................................................................................................................................................................................................................................................2011.001000000000000000000100000000000000000000000000000000000000000000
......................................................................................................AAAT-------TTACAGTACGA-----A-----------ATT...............................................................................................................................................................................................................1911.001000000000000001000000000000000000000000000000000000000000000000
................................................................................AGCTTAAGTGCAAAAAGTGAATAA.......................................................................................................................................................................................................................................................2411.001000000000000000000000000000000000000000000000000000000000000100
...................................................................................................................................................................................................................................................................................................................GAAGAAG------AAGAG---AAGAA---------AAAG.....2111.001000000000000000000000000000001000000000000000000000000000000000
..............................................................................................AAGTGAATAAAT-------TTACAGTACG....................................................................................................................................................................................................................................2211.001001000000000000000000000000000000000000000000000000000000000000
........CCATGCTATACCAGATGAGT...................................................................................................................................................................................................................................................................................................................................2011.001000000000000000001000000000000000000000000000000000000000000000
...............ATACCAGATGAGTCTAAAA.............................................................................................................................................................................................................................................................................................................................1911.001001000000000000000000000000000000000000000000000000000000000000
....................................................................................................ATAAAT-------TTACAGTACGA-----A-----------AT................................................................................................................................................................................................................2011.001000100000000000000000000000000000000000000000000000000000000000
...........TGCTATACCAGATGAGTCTAAA..............................................................................................................................................................................................................................................................................................................................2211.001000000000000000000010000000000000000000000000000000000000000000
......................................AATGTA-ACGTAGTTGA-----AATT---------CT-G..................................................................................................................................................................................................................................................................................2311.001000000000000000001000000000000000000000000000000000000000000000
.........................................GTA-ACGTAGTTGA-----AATT---------CT-GT.................................................................................................................................................................................................................................................................................2111.001000000000000000100000000000000000000000000000000000000000000000
............................CTAAAAAATAAATGTA-ACGTAGTTGA-----...................................................................................................................................................................................................................................................................................................2611.001000000000000001000000000000000000000000000000000000000000000000
...............................................GTAGTTGA-----AATT---------CT-GTTAAGCT...........................................................................................................................................................................................................................................................................2211.001000000000000000000100000000000000000000000000000000000000000000
..........................................................................T-GTTAAGCTTAAGTGCAAAAA...............................................................................................................................................................................................................................................................2111.001000000000000000001000000000000000000000000000000000000000000000
...............................................................T---------CT-GTTAAGCTTAAGTGCAAAAAGTG............................................................................................................................................................................................................................................................2611.001000000000100000000000000000000000000000000000000000000000000000
.............................TAAAAAATAAATGTA-ACGT..............................................................................................................................................................................................................................................................................................................1911.001000000000000001000000000000000000000000000000000000000000000000
...............................................................T---------CT-GTTAAGCTTAAGTGCAAAA................................................................................................................................................................................................................................................................2211.001000000000000000001000000000000000000000000000000000000000000000
.............................................................................................AAAGTGAATAAAT-------TTACAGTA......................................................................................................................................................................................................................................2111.001000000000000000000000100000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................GGGCCTGGAAGAGATTGAGGAC............................................2211.001100000000000000000000000000000000000000000000000000000000000000
................................................TAGTTGA-----AATT---------CT-GTTAAGCT...........................................................................................................................................................................................................................................................................2111.001001000000000000000000000000000000000000000000000000000000000000
.........................................................................CT-GTTAAGCTTAAGTGCAAAA................................................................................................................................................................................................................................................................2111.001000000000000000001000000000000000000000000000000000000000000000
.............................................................ATT---------CT-GTTAAGCTTAAGTGCAAAAAG..............................................................................................................................................................................................................................................................2611.001000000000000000001000000000000000000000000000000000000000000000
............................................................................GTTAAGCTTAAGTGCAAAAA...............................................................................................................................................................................................................................................................2011.001000000000000000001000000000000000000000000000000000000000000000
.........................................................................CT-GTTAAGCTTAAGTGCAAAAAGT.............................................................................................................................................................................................................................................................2411.001000000000000000001000000000000000000000000000000000000000000000
.......................................................................................................AAT-------TTACAGTACGA-----A-----------ATTGAA............................................................................................................................................................................................................2111.001001000000000000000000000000000000000000000000000000000000000000
...........TGCTATACCAGATGAGTCTA................................................................................................................................................................................................................................................................................................................................2011.001000000000000001000000000000000000000000000000000000000000000000
....................AGATGAGTCTAAAAAATAAATGTA-AC................................................................................................................................................................................................................................................................................................................2611.001000000000000000000100000000000000000000000000000000000000000000
...................................ATAAATGTA-ACGTAGTTGA-----AA.................................................................................................................................................................................................................................................................................................2111.001000000000000000000000000000000000000000100000000000000000000000
................................................................................AGCTTAAGTGCAAAAAGTGAATAAA......................................................................................................................................................................................................................................................2511.001000000000000000001000000000000000000000000000000000000000000000
.....................................................GA-----AATT---------CT-GTTAAGCTTAAGTGCAA..................................................................................................................................................................................................................................................................2511.001001000000000000000000000000000000000000000000000000000000000000
.................................................................................................................TTACAGTACGA-----A-----------ATTGAAAAAAA--------...............................................................................................................................................................................................2340.251000000000000010000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................AGAAG------AAGAG---AAGAA---------AAAGA....2070.141000000000001000000000000000000000000000000000000000000000000000
droMoj3
CAGGGTCTTAATGCTGTACCAGATGAGGATAGGAAGTAAATGTAAACCTAGTTGA-----AATT---------CT-GTTAAGCTTAAGTGCAAAAAGTGAATAAAA-------TTACAAATCGAAACTGAATTAAAATTGGAGTTAAAATTG--------AAAATAT-ATATTTAA-------------------------GTAGTATTTCTTTAGTTCTCA---TTAGAGTTTA----TG-CTC-----GGTGC-----------TTTCGAATT--CATTTACAGGGTCTGAAGGAGATTAAAGAAGAAGACG------AGTAC---GAAAAAG------AGAA-----GSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
.......TTAATGCTGTACCAGATGAGGATAGGA.............................................................................................................................................................................................................................................................................................................................2711.001000001
......................................................................................................AAAA-------TTACAAATCGAAACT...............................................................................................................................................................................................................................1911.001100000
.........................................................................CT-GTTAAGCTTAAGTGCAAAAAGT.............................................................................................................................................................................................................................................................2411.001100000
.................................AAGTAAATGTAAACCTAGTTGA-----AATT---------......................................................................................................................................................................................................................................................................................2611.001100000
...........................................................................................................................................................................................................................................................................TTCGAATT--CATTTACAGGG...............................................................1911.001100000
................TACCAGATGAGGATAGGA.............................................................................................................................................................................................................................................................................................................................1811.001000100
....................AGATGAGGATAGGAAGTAAATGTAAAC................................................................................................................................................................................................................................................................................................................2711.001000001
............................................................................GTTAAGCTTAAGTGCAAAA................................................................................................................................................................................................................................................................1911.001001000
droGri2
CAGGGTCTCCATGCTATTCCAGATGAGTCCAAAAATTAAATGTT-ATGTAGTTGA-----AATT---------CT-ATTAAGCTTAAGTGCAA-AAGTGAATAAAT-------ATACAGTACGA-----A-----------ATTGAAAATCGAAAATTTTAAAGGCTCATATTTCAGTTATTGT------------------T--AGAACTTGT-------------AGAATT-GTAT-TA-TTTAGCGATATTT-----AAGTGC------ATT--CCTTTACAGGGTCTAGAAGAGATTGAAGATGAGGATGAAGATGTTGCG---AATAAAA---AGACGCAACAAACSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads

Generated: 05/19/2015 at 12:58 AM