ID:

dsi_483

Coordinate:

2r:5150312-5150370 +

Confidence:

Candidate

Type:

Unknown

[View on UCSC Genome Browser {Cornell Mirror}]

Legend:

mature

star

mismatch in read

Predicted structure

Flybase annnotation

intergenic

No Repeatable elements found

Sense Strand Reads

GGATAGGCTACCACTCGAATATTATGGTCACTAGTCCCAAATACATGGAGGTGAGTGTGACATGTTAATATCGCTAGGGCGAGGATGGTACAATGCAGCTTTTGCGCAGTTTATACTTAGCAGTCAGACTCTGATATCCAAGTCCGATGTATATGATCT ************************************************.((..................(((..((((....((......))...))))..))))).************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR553485 Chicharo_3 day-old ovaries	SRR553486 Makindu_3 day-old ovaries	M023 head	SRR553487 NRT_0-2 hours eggs	SRR902009 testis	SRR618934 dsim w501 ovaries	SRR553488 RT_0-2 hours eggs
.............................................................................................................TTTATACTTAGCAGTCAGACTC............................	22	0	1	1.00	1	0	0	1	0	0	0	0
...............................................................................................................TATCCTTAGGAGTCAGACT.............................	19	2	1	1.00	1	1	0	0	0	0	0	0
................................................................................................................ATCCTTAGGAGTCAGACT.............................	18	2	2	0.50	1	0	1	0	0	0	0	0
............................................................................GGGAGAGGATGGTAGAAT.................................................................	18	2	4	0.50	2	0	0	0	1	1	0	0
.................................................................................................................TCCTTAGGAGTCAGACT.............................	17	2	4	0.25	1	0	1	0	0	0	0	0
................................................................................................................ATCCTTAGGAGTCAGAC..............................	17	2	5	0.20	1	1	0	0	0	0	0	0
.................................................................................................................TCCTTAGGAGTCAGAC..............................	16	2	17	0.18	3	0	3	0	0	0	0	0
.............................................................................GGAGAGGATGGTAGAAT.................................................................	17	2	20	0.15	3	0	2	0	0	0	0	1
..................................................................................................................CCTTAGGAGTCAGACT.............................	16	2	14	0.14	2	2	0	0	0	0	0	0
........................................ATACAGGGTGGTGAATGTGA...................................................................................................	20	3	8	0.13	1	0	0	0	0	0	1	0
............................................................................GGGAGAGGTTGGTACAATT................................................................	19	3	16	0.06	1	0	0	0	1	0	0	0
............................................................................GGGAGAGGATGGTAGAA..................................................................	17	2	17	0.06	1	0	1	0	0	0	0	0
................................................................................................................ATCCTTAGGATTCAGACT.............................	18	3	20	0.05	1	0	1	0	0	0	0	0

Anti-sense strand reads

CCTATCCGATGGTGAGCTTATAATACCAGTGATCAGGGTTTATGTACCTCCACTCACACTGTACAATTATAGCGATCCCGCTCCTACCATGTTACGTCGAAAACGCGTCAAATATGAATCGTCAGTCTGAGACTATAGGTTCAGGCTACATATACTAGA ************************************************.((..................(((..((((....((......))...))))..))))).************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M024 male body	SRR553485 Chicharo_3 day-old ovaries	SRR618934 dsim w501 ovaries	SRR902008 ovaries
......................................................................................................................TCGTCAGACTTAGACTAT.......................	18	2	3	1.00	3	3	0	0	0
.........................CCAGTGATCAGGGTC.......................................................................................................................	15	1	2	0.50	1	0	1	0	0
.....................................................................................................ACCGCGTCAGATATGAA.........................................	17	2	7	0.14	1	0	0	1	0
..................................................................................CCTACCAAGCTACGTCAAAA.........................................................	20	3	8	0.13	1	0	0	0	1

Generated: 04/23/2015 at 10:41 AM