ID:

dsi_4826

 Coordinate:

3l:8261138-8261302 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-17.3 -17.3 -17.3

Flybase annnotation

intergenic

No Repeatable elements found

Sense Strand Reads

TGATGGCGGCCTCCACTCAAGGAGAAATTCGAGTGGGTCCCGGCCACCAGGTAAACGATGTCTATGTACGTACATAACTCTCACAAATCAGAAATTCAGCTCACGGTAACAAAAATGAAATCAAAGAACTACAAAATTTAACAATTATGCAAAACGAAAATGTAGCCCCTATATTTCTTTTGTTTATTGCAAAAGTTGTAATTTATATTCCTTTGTTCTTCCTCTTGGATGTCTTCAACAAAAAGTTCGTTTACCAACTGTTTTT
**************************************************......((.((.(((((....)))))))..)).....(((........(((...)))........)))...(((((.......(((((..((((((.((((((((((((((((((...))))))...)))))))..)))))..)))))))))))......)))))************************************************** 		Read size # Mismatch Hit Count Total Norm Total M053
female body
 SRR618934
dsim w501 ovaries
 SRR553485
Chicharo_3 day-old ovaries
 SRR553487
NRT_0-2 hours eggs
 SRR553488
RT_0-2 hours eggs
 SRR553486
Makindu_3 day-old ovaries
........................................................................................................GGTAACAAAAATGAAATCAAA............................................................................................................................................ 21 0 1 1.00 1 1 0 0 0 0 0
................................................................................................................................................................................................................................TTGGATGTCTTCAACAAAAAGTTCGTT.............. 27 0 1 1.00 1 1 0 0 0 0 0
.................................TGGGTCCCGGCCACCAGGTAAACGA............................................................................................................................................................................................................... 25 0 1 1.00 1 0 0 1 0 0 0
................................................AGGTAAACGATGTCTAT........................................................................................................................................................................................................ 17 0 1 1.00 1 0 1 0 0 0 0
.................................................CGTAAACGATGTCTA......................................................................................................................................................................................................... 15 1 10 0.50 5 0 1 0 2 1 1
..........................................GCCACCAGGTAAGGGAAGTC........................................................................................................................................................................................................... 20 3 5 0.20 1 0 1 0 0 0 0
.............................CGATTCCGTCCCGGCCACCA........................................................................................................................................................................................................................ 20 3 13 0.08 1 0 0 0 0 1 0
........................................CGCCCACCAGGTAAAGGA............................................................................................................................................................................................................... 18 2 18 0.06 1 0 1 0 0 0 0
...........................................................................................................................................................GAGAATGTAGACCCT............................................................................................... 15 2 20 0.05 1 0 0 0 1 0 0

Anti-sense strand reads

ACTACCGCCGGAGGTGAGTTCCTCTTTAAGCTCACCCAGGGCCGGTGGTCCATTTGCTACAGATACATGCATGTATTGAGAGTGTTTAGTCTTTAAGTCGAGTGCCATTGTTTTTACTTTAGTTTCTTGATGTTTTAAATTGTTAATACGTTTTGCTTTTACATCGGGGATATAAAGAAAACAAATAACGTTTTCAACATTAAATATAAGGAAACAAGAAGGAGAACCTACAGAAGTTGTTTTTCAAGCAAATGGTTGACAAAAA
**************************************************......((.((.(((((....)))))))..)).....(((........(((...)))........)))...(((((.......(((((..((((((.((((((((((((((((((...))))))...)))))))..)))))..)))))))))))......)))))************************************************** 		Read size # Mismatch Hit Count Total Norm Total GSM343915
embryo
 SRR553485
Chicharo_3 day-old ovaries
 SRR902009
testis
 M024
male body		 SRR553486
Makindu_3 day-old ovaries
 SRR553487
NRT_0-2 hours eggs
........................................................................................................................AGTATCTTGATGTTTTGGATTGT.......................................................................................................................... 23 3 1 1.00 1 1 0 0 0 0 0
..............................................................................................................................................................................................................TAAGGAAACAAGAAGGAG......................................... 18 0 2 0.50 1 0 1 0 0 0 0
...................................................................................................................................................................................................................................CTACAGAAGCTGGTTTGCAA.................. 20 3 5 0.20 1 0 0 0 1 0 0
............................ACCTCACCCAGCGGCGGTGG......................................................................................................................................................................................................................... 20 3 12 0.17 2 0 0 2 0 0 0
...........................................................................................................................................................................................................................AGGAGAACCGACAGAAAT............................ 18 2 7 0.14 1 0 1 0 0 0 0
...............................TCACCCAGCGGCGGTGGT........................................................................................................................................................................................................................ 18 2 9 0.11 1 0 0 1 0 0 0
.......................................GGCCGGCGGTCAATTAGCTA.............................................................................................................................................................................................................. 20 3 10 0.10 1 0 0 1 0 0 0
.................................................................................GTGTATTGTCTTTAAGTCCA.................................................................................................................................................................... 20 3 10 0.10 1 1 0 0 0 0 0
.............................CCTCACCCAGCGGCGGTGGT........................................................................................................................................................................................................................ 20 3 10 0.10 1 0 0 1 0 0 0
...................................................................................GTTTAGTCTTTAAGTCAG.................................................................................................................................................................... 18 2 14 0.07 1 0 0 0 1 0 0
.............................................................................................................................................................TTTAGATCGGGCATAT............................................................................................ 16 2 20 0.05 1 0 0 0 0 1 0
............................................................................................TTAGGTCGCGTGCCAT............................................................................................................................................................. 16 2 20 0.05 1 0 0 0 0 0 1

Generated: 04/24/2015 at 10:47 AM