ID:

dsi_4789

 Coordinate:

2r:9714388-9714537 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

Flybase annnotation

Antisense to five_prime_UTR [2r_9714220_9714374_-]; Antisense to exon [2r_9714051_9714374_-]; exon [2r_9714301_9714387_+]; CDS [2r_9714301_9714387_+]; intron [2r_9714388_9715010_+]

No Repeatable elements found

Sense Strand Reads

##################################################--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
TTATGTACCAGCGCGATTTCCGACTGACCGACAATCCCTACAAGATGAACGTAAGTGGTGTGCTATAGTCTGGCCTGCCTACAACTGATTTTTGTGCGGCAGGCCAACCATCACGTTTTTACACTATTTTTGGCAGCAGTTTTGTTATCTCACAGCACTCACTCCATTAATATGCACGCTCATTTTGGTTTCGTTGTTTGTTTTTCTCTATGTTGAATAGATTGTTTTTGGTGTTATTAACTTGCTTTCT
**************************************************..(((((((((((....((.((((((((((((((.......))))).)))))))))))................((((..(((.((.(((.((((......)))).)))..)))))..)))).)))))).)))))...............************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553486
Makindu_3 day-old ovaries
 SRR553485
Chicharo_3 day-old ovaries
 SRR902009
testis
 M053
female body
 SRR553488
RT_0-2 hours eggs
 M025
embryo
 GSM343915
embryo
 SRR553487
NRT_0-2 hours eggs
 M023
head
 SRR902008
ovaries
 SRR618934
dsim w501 ovaries
 O001
Testis
..................TCCGACTGACCGACAATCCCTACAAGA............................................................................................................................................................................................................. 27 0 1 19.00 19 12 6 0 0 1 0 0 0 0 0 0 0
.................TTCCGACTGACCGACAATCCCTACAAGA............................................................................................................................................................................................................. 28 0 1 3.00 3 1 1 0 1 0 0 0 0 0 0 0 0
....................CGACTGACCGACAATCCCTA.................................................................................................................................................................................................................. 20 0 1 2.00 2 0 0 2 0 0 0 0 0 0 0 0 0
..................TCCGACTGACCGACAATCCCTACAAGAC............................................................................................................................................................................................................ 28 1 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0
..................TCCGACTGACCGACAATCCCTACAAGAA............................................................................................................................................................................................................ 28 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
.....................GACTGACCGACAATCCCTACAAGATGAAC........................................................................................................................................................................................................ 29 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0
....................CGACTGACCGACAATCCCTACAAGAAAA.......................................................................................................................................................................................................... 28 2 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0
............................CGACAATCCCTACAAGATG........................................................................................................................................................................................................... 19 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0
..................TCCGACTGACAGACAATCCCTACAAGA............................................................................................................................................................................................................. 27 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
.............................................TGAACGTAAGTGGTGTGCTAT........................................................................................................................................................................................ 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
.............................GACAATCCCTACAAGATGAACGGT..................................................................................................................................................................................................... 24 2 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0
.....................GACTGACCGACAATCCCTACAAGATGA.......................................................................................................................................................................................................... 27 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
.........AGCGCGATTTCCGACTGACCGACA......................................................................................................................................................................................................................... 24 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0
TTATGTACCAGCGCGATTTC...................................................................................................................................................................................................................................... 20 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0
................TTTCCGACTGACCGACAATCCCTACAAGA............................................................................................................................................................................................................. 29 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
.......CCAGCGCGATTTCCGACT................................................................................................................................................................................................................................. 18 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0
........................TGACCGACAATCCCTACAAGATGAA......................................................................................................................................................................................................... 25 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0
............................................................TGCTATAGTCTGGCCTGCCTT......................................................................................................................................................................... 21 1 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0
................TTTCCGACTGACCGACAATCCCTACAAG.............................................................................................................................................................................................................. 28 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
...........CGCGATTTCCGACTGACCGAC.......................................................................................................................................................................................................................... 21 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0
....................................................................................................................................GGAGCAGTTTTGTTATC..................................................................................................... 17 1 11 0.09 1 0 0 0 0 0 0 0 0 0 0 1 0
..................................................................................................................................................................................................TGTTTGTTTTTCTCTCTG...................................... 18 1 13 0.08 1 0 0 0 0 0 0 0 0 0 0 0 1
...............................................................................................................................................................................................................GTATGGTGAATAGATGGTTT....................... 20 3 14 0.07 1 0 0 1 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................................TTGAATAGTTTGCGTTTGGT.................. 20 3 20 0.05 1 0 0 0 0 0 0 0 1 0 0 0 0
........................................CAAGATGAACGCAAGA.................................................................................................................................................................................................. 16 2 20 0.05 1 0 0 0 0 1 0 0 0 0 0 0 0

Anti-sense strand reads

#####################################---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
AATACATGGTCGCGCTAAAGGCTGACTGGCTGTTAGGGATGTTCTACTTGCATTCACCACACGATATCAGACCGGACGGATGTTGACTAAAAACACGCCGTCCGGTTGGTAGTGCAAAAATGTGATAAAAACCGTCGTCAAAACAATAGAGTGTCGTGAGTGAGGTAATTATACGTGCGAGTAAAACCAAAGCAACAAACAAAAAGAGATACAACTTATCTAACAAAAACCACAATAATTGAACGAAAGA
**************************************************..(((((((((((....((.((((((((((((((.......))))).)))))))))))................((((..(((.((.(((.((((......)))).)))..)))))..)))).)))))).)))))...............************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR902009
testis
 M025
embryo
 SRR618934
dsim w501 ovaries
 SRR553485
Chicharo_3 day-old ovaries
 M024
male body		 O001
Testis
 SRR553486
Makindu_3 day-old ovaries
 SRR553488
RT_0-2 hours eggs
 SRR902008
ovaries
 SRR553487
NRT_0-2 hours eggs
.........................CTGGCTGTTAGGGATGTTCTA............................................................................................................................................................................................................ 21 0 1 6.00 6 6 0 0 0 0 0 0 0 0 0
.......................GACTGGCTGTTAGGGATGTT............................................................................................................................................................................................................... 20 0 1 2.00 2 1 0 0 0 1 0 0 0 0 0
..........CGCGCTAAAGGCTGACTGG............................................................................................................................................................................................................................. 19 0 1 2.00 2 0 2 0 0 0 0 0 0 0 0
...................GGCTGACTCGATGTTAGGG.................................................................................................................................................................................................................... 19 2 3 1.33 4 4 0 0 0 0 0 0 0 0 0
...........................................................................................................GGTAGTGCTAAAATGTG.............................................................................................................................. 17 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0
.........................ATGGCTGTTAGGGATGTTCTA............................................................................................................................................................................................................ 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0
..........................TGGCTGTTAGGGATGTTCT............................................................................................................................................................................................................. 19 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.ATACATTGTCGCGCTAA........................................................................................................................................................................................................................................ 17 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0
...........................GGCTGTTAGGGATGTTCTACT.......................................................................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
................AAAGGCTGACTGGCGG.......................................................................................................................................................................................................................... 16 1 1 1.00 1 0 0 0 1 0 0 0 0 0 0
.....ATGGTCGCGCTAAAGGCTG.................................................................................................................................................................................................................................. 19 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0
.....ATAGTCGTGCTAAAGGCTGGC................................................................................................................................................................................................................................ 21 3 2 0.50 1 0 0 0 0 0 0 1 0 0 0
........GTCGTGCTAAAGGCTG.................................................................................................................................................................................................................................. 16 1 3 0.33 1 0 0 0 1 0 0 0 0 0 0
..................TGGCTGACTCGATGTTAGGG.................................................................................................................................................................................................................... 20 3 8 0.25 2 1 0 0 0 0 0 0 0 1 0
........GTCGTGCTAAAGGCTGGC................................................................................................................................................................................................................................ 18 2 4 0.25 1 0 0 0 1 0 0 0 0 0 0
.........TCGTGCTAAAGGCTGGC................................................................................................................................................................................................................................ 17 2 8 0.13 1 0 0 0 0 0 0 0 1 0 0
............CGCTAAAGGCTGGCT............................................................................................................................................................................................................................... 15 1 9 0.11 1 0 0 0 0 0 0 0 1 0 0
........GTCGTGCTAAAGGCT................................................................................................................................................................................................................................... 15 1 18 0.11 2 0 0 0 2 0 0 0 0 0 0
..........................................................................................................................................CAAACCAATAGGGTGTCG.............................................................................................. 18 2 9 0.11 1 0 0 0 0 0 0 0 1 0 0
..........CGTGCTAAAGGCTGGC................................................................................................................................................................................................................................ 16 2 20 0.10 2 0 0 0 1 0 0 1 0 0 0
.......AGTCGTGCTAAAGGCTGGC................................................................................................................................................................................................................................ 19 3 13 0.08 1 0 0 0 0 0 0 1 0 0 0
.......AGTCGTGCTAAAGGCTG.................................................................................................................................................................................................................................. 17 2 14 0.07 1 0 0 0 0 0 0 1 0 0 0
........GACGCGCTAAAGGCT................................................................................................................................................................................................................................... 15 1 16 0.06 1 0 0 0 0 0 0 0 0 0 1
..............................................................................................................AGTGTAAAAATGTGA............................................................................................................................. 15 1 20 0.05 1 0 0 0 0 0 0 1 0 0 0
...........TCGCTAAAGGCTGCCT............................................................................................................................................................................................................................... 16 2 20 0.05 1 0 0 0 0 0 0 0 0 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 2r:9714338-9714587 + dsi_4789 TTATGTACCAGCGCGATTTCCGACTGACCGACAATCCCTACAAGATGAACGTAAGTGGTGT-GCTAT----AGTCTGGCCTGCCTACAACTGATTTTT----GTGCGGCAGGCCAA----------------------------------------------------------CCAT---------------------------------------CACG----TTT------TTACACTATTTTTGGCAGCAGTTTTGTTATCTCACAGCACTCA-----CTCCATTAATATGCACGCTCA-------TTTTGGTTTCGTT------------------------------------------GTTT-----------------------------------------------GTTTTTCTCT---------------------------------------------------------------------ATGTTGAA-----TAGATTGTTTTTGGTG--------------------------------------------------------------------------------TTATTAAC---------------TTGCTTTCT
droSec2 scaffold_1:6569468-6569726 + TTATGTACCAGCGCGATTTCCGACTGACCGACAATCCCTACAAGATGAACGTAAGTGGTGT-GCTAT----AGTCTGGCCTGCCTACAACTGATTTTT----GTGCAGCAGGCAAA----------------------------------------------------------CCAT---------------------------------------CACG----TTT------TTACACTATTTTTGGCAGCAGTTTTGTTATCTCACAGCACTCA-----CTCCATTAATATGCACGCTCA-------TTTTAGTTTCGTT------------------------------------------GTTTG------------------------------------TT-------TGTTTTTCTCT----------------------------------------------------------G------AAGTATGTTGAA-----TAGATTCTTAATGGTG--------------------------------------------------------------------------------TTATTAAC---------------TTGCTTTCT
dm3 chr2R:9046559-9046815 + TTATGTACCAGCGCGATTTCCGACTGACCGACAATCCCTACAAGATGAACGTAAGTGTTGT-GCTAT----AGTCTGGCCTGCCTACAACTGATTTTT----GTGCGGCAGGCCAA----------------------------------------------------------CCAT---------------------------------------CACG----TTT------TTACCCTATTTTTGGCAGCAGTTTTGTTATCTCACAGCACGCA-----CTTCATTATTATGCACGCTCA-------TTTTGGTTTCGTT------------------------------------------GTTTA---------------------------------------------TGTTTTTCTCT----------------------------------------------------------G------AAGTATGTTAAA-----TAGATTGTTTTTGGTG--------------------------------------------------------------------------------TTATGAAC---------------TAGCTTTCT
droEre2 scaffold_4845:16775452-16775711 - TTATGTACCAGCGCGATTTCCGACTGACCGACAATCCCTACAAGATGAACGTAAGTGGTAT-GCTAT----AGTCTGGCTTGCCTACAGCTGATTTTT----GTACGGCCGGCCAG----------------------------------------------------------CTAT---------------------------------------CACGCTCGTTT------TTGCCCTATTTCTGTCAGCAGTTTGGTTATCTCATATCACTCA-----CTCCATAAATATGCACGCTCC-------TTTT-GTTTCGTT------------------------------------------GTTTA---------------------------------------------TGTTTTTCTAT----------------------------------------------------------A------AAGTATATTAAA-----TAGATGGATTTTGGTG--------------------------------------------------------------------------------TTATTAAC---------------TTGTTTTCG
droYak3 2R:7918691-7918952 - TTATGTACCAGCGCGATTTCCGACTGACCGACAATCCCTACAAGATGAACGTAAGTGGCAT-GCTAT----AGTCTGGCCTGCCTACAGCTGATTTTT----GTGC----GGCCAA----------------------------------------------------------CTAT---------------------------------------CACG----CTTTTGATTTTGGCATATTTCTGGCAGCAGTTTTGTTATCTCATAGC-CTCA-----CTCCATAAATATGCACGCTCA-------TTTTGGTTTTGTT------------------------------------------GTTTA---------------------------------------------TGTTTTTCTTT----------------------------------------------------------G------AATTATATTAATTGATTTAGATCGATATTGGTG--------------------------------------------------------------------------------TTATAAAC---------------TT-TTTTCG
droEug1 scf7180000409672:3539850-3540099 - TGATGTACCAGCGCGATTTCCGATTGACCGACAATCCCTACAAGATGAACGTAAGTGATATTGCTAC----AGACTGGCCTGCTTACAACAAATTTAT----TT-----TGGCCA---------CTCATT--------------------------------------------TTAT---------------------------------------CACG----TTTTTGTTGTTGCTGGATTTTTGGCAGCTGTTTTGTTATCTCATAGTGTTGTTTAGTTTTCATAT---------------------------------------------------------------------------------------------------------------AAAGGTTTTGA------CCTATAATGTATTA--------------------------------------------------A-------------------C-----AAAATGG---------------------------------------------------------T-------AAACCTATTGATTTTTTAG-----T----ATA---TC----------ATGTCATAT
droBia1 scf7180000302292:48031-48240 + TGATGTACCAGCGCGACTTCCGACTAACCAACAATCCCTACAAAATGAACGTGAGTGATAT-GCTGT----AGTCTGGCCTGCTTAAAAATCATTTTC----G-------GGTC-------------------------------------------------------------------------------------------------------------------------------ATTTTTGGCGTCACT--TGTTATC--ATTGAGCTTT-----GCCCGTAAACGTTTACGTTTC-------TTTT---------------------------------------------------------------------------------------AAGGGTTTTGGTTAAATTACTTTTCGTGTTTTATCAGT--------------------------------------------------------------------------------------------------------------------------------------------T------------------------TCAACAAA---------------TT-TTTATT
droTak1 scf7180000415386:157249-157551 + TTATGTACCAGCGCGACTTTCGACTGACCAACAATCCCTACCAGATGAACGTAAGTGATAT-GCTAC----AGTCTGGCCTGATTAAAAAGTATTTTT----GA-----AGGCC-------------------------------------------------------------------------------------------------------------------------------ATTTCTGGCAGCTGT--TGTTATCTCATAGAGCTTT-----TTCCAAAAATGTTCACATTTG-------TTTTGAGTTTTT------------------------------------------------T-------------------------------TTGGTTTTGGTTACCCTGTATTTTGTATTTAAGAGGTTTTAAATCACTAATGTCTAAAGATTAATTTTATTGTTCGAGTAACACAATATCTTTT-----TA-----TGGATTGCTTCTGGTA--------------------------------------------------------------------------------CTATTCACAA---------TATTTTTCTTTAT
droEle1 scf7180000489694:391614-391883 - TTATGTACCAGCGCGATTTCCGACTGACCGACAATCCCTACAAGATGAACGTAAGTGATAC-GCTAC----AGTCTGGCCTGCTTACAACTAATCTATTTATGTACA--------------------------------------------------------------------------------------------------------------TATG----TGT------TTCCCCGGTTTTCGGCCATAGTTTCATTATCTCTTGCACTTAT-----TTTCAAACA--AACTTGTTAA--------------------------------------------------------------------------------------------------ATGGGATTTGGTTATAATTTACTTTATATTT--------------------------------------------------T-C------AAGTGCGT----------TG-------------------------------------------------------------T-------ATATTTATTAGTTTGTTTATATTATT-TTCGCTTTCCATGTATTACTTTTCTTAGA
droRho1 scf7180000779872:290132-290402 - TAATGTACCAGCGCGATTTCCGACTGACCGACAATCCCTACAAGATGAACGTAAGTGATAT-GCTAC----AGTCTGGCCTGCGTACAATTAATCTAT-----------TGGCCAGCATTGGCGCTTATG--------------------------------------------CTAT---------------------------------------CACA----TTTTTGTGTTTCCCCGGTTTTTGGCCATGGTTTCGTTATCTCATACAGCTAT-----TTTCATAAATATTGA---TCT-------TTTT---------------------------------------------------------------------------------------ATGGGATTTAGTTATATTTTACTTTATGTTT--------------------------------------------------A-G------AATTGTAT----------TGATTGCTTTTATAT--------------------------------------------------------------------------------TTTTTCACAT-------------TCCATTTAT
droFic1 scf7180000454066:213824-213995 - TTATGTACCAGCGCGATTTCCGACTGACCGACAATCCCTATTTGATGAACGTAAGTGATAT-AGTGTTTCTAGTCTTGCTTGCTTTAGACCTATTTTT----GT-----AGGCCAGCAT-------------------------------------------------------TGGT---------------------------------------CACG----TTT------TGATA-----CTCGGCAATAGTT-TGTTATCTCACCCTAACAA-----TTCCGAAAATATTCA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droKik1 scf7180000302639:244232-244295 - TGATGTACCAGCGCGATTTCCGACTGACCGACAATCCCTATTTGATGAACGTAAGTGATAT-GCT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droAna3 scaffold_13266:6510720-6511027 + TGATGTACCAGCGCGATTTCCGATTGACCAACAATCCCTATCAGATGAACGTAAGTGGTTT----------AGTTCGACCTGGTT-CTCTGCATTTTC------------------------CCCTCATTTGATCGTTTTGTGGTGTTTTTGATGGTGCCGGGTGTTA---------T-------------------------ACCAAATTCTT---CACG----TTA------TTTCC---------------------------------------------------------------------------------------------ATTTCGATTGCATGTCCGGAAAT-ATTGTTT-------TTTAATTTGGTTTATTGACTATATCATTTTGGAGGGATTTGGTTTGAATAT-------------------------------------------------------------------------------------------------------TGTATCGTACTGTGTTCGATCATTTGTCATAATTTTTCAAAGGCATTTTGTTATTT------------------------T---CAAA---------------AAGATTATC
droBip1 scf7180000396423:86745-87018 + TGATGTACCAGCGCGATTTCCGATTGACCAACAATCCCTATCAGATGAACGTAAGTGTTTT----------AGCTTGGCCTGGTT-CTCTGCATTTTT------------------------CCCTCATTTAATCGC--------GTTTTT--TGGTGCTGGCTGTTAGAAAAACTAT---------------------------------------CAAA----T---------------------------------------------------------TACAGAATTATCCACGATCTATGGGCGATTGGGTTTTAAAGTTAATTCCATTTCGATTGCATATCCAAAAATGATTGGTT-------TTTAATTTGTTTTATTGACTA-------------------------------------------------------------------------------------------ACACATTTTCAACA-----CA-----AAAACAGGATCAGG-------------------------------------------------------------------------------------------------------------ATTGA
dp5 3:5816662-5816755 + TGATGTACCAACGCGATTTCCGACTGAC-GATTATCCGTATGTAATTAATATTTGTT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GATAGGTGT-----TTTCGTATTCTCAGGC-----TTCCTC-----------------------------------------------------------------ATGAT-----TG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droPer2 scaffold_2:6015392-6015485 + TGATGTACCAGCGCGATTTCCGACTGAC-GATTATCCGTATGTAATTGATATTTGTT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GATAGGTGT-----TTTCGTATTCTCGGGC-----TTCCTC-----------------------------------------------------------------ATGAT-----TG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droWil2 scf2_1100000004513:401346-401538 + TTATGTATCAACGCGACTTTCGACTGACCAACAATCCATATTTGATGAATGTAAGTGCTAA----------AGATTAATCAAAG-ACATCTGATTTTC------------------------ATTTGATTTTTGCATGTTTTCGAGTTAGTTAAGGTATAAGCAT---------AAAT-------------------------AACGGTGGTTGTAT-----------------------------------------------T-----------------------------------TCA-------TTTTAATTT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCCACTGTTTACAGTTGGTCTATG--------------------------------------------------------TAAA------------------------TAAC
droVir3 scaffold_12875:808368-808532 + TTATGTACCAGCGCGATTTCCGACTGACCAACAATCCCTACATTATGAACGTAAGTGATAT--CTCT----AATTTTAGTTTCCTAT--------------------GCATGCCAA----------------------------------------------------------CTATTATCGACCTGTTTCATTTGTTTAACTATGTTGATTGAGT-----------------------------------------------------------------------------------------------TTCATTTCATT------------------------------------------ATTT--------------------------------------------------------------------------------------------------------------------------------------------------------GTA--------------------------------------------------------------------------A-----T----ATG---------------TCACGTTCT
droMoj3 scaffold_6496:3829556-3829616 + TTATGTATCAGCGCGATTTCCGACTGACCAACAATCCCTACGTAATGAATGTAAGTGATAT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droGri2 scaffold_15245:10146145-10146203 - TGATGTATCAACGCGATTTCCGACTGACCAACAATCCGTACATAATGAATGTAAGTCGT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
TTATGTACCAGCGCGATTTCCGACTGACCGACAATCCCTACAAGATGAACGTAAGTGGTGT-GCTAT----AGTCTGGCCTGCCTACAACTGATTTTT----GTGCGGCAGGCCAA----------------------------------------------------------CCAT---------------------------------------CACG----TTT------TTACACTATTTTTGGCAGCAGTTTTGTTATCTCACAGCACTCA-----CTCCATTAATATGCACGCTCA-------TTTTGGTTTCGTT------------------------------------------GTTT-----------------------------------------------GTTTTTCTCT---------------------------------------------------------------------ATGTTGAA-----TAGATTGTTTTTGGTG--------------------------------------------------------------------------------TTATTAAC---------------TTGCTTTCTSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
..................TCCGACTGACCGACAATCCCTACAAGA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................27119.0019000000612010000000
.................TTCCGACTGACCGACAATCCCTACAAGA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2813.00300010011000000000
....................CGACTGACCGACAATCCCTA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2012.00200000000000002000
..................TCCGACTGACCGACAATCCCTACAAGAC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2812.00200000002000000000
..................TCCGACTGACCGACAATCCCTACAAGAA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.00100000001000000000
.....................GACTGACCGACAATCCCTACAAGATGAAC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2911.00100010000000000000
............................CGACAATCCCTACAAGATG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100100000000000000
.............................................TGAACGTAAGTGGTGT-GCTAT----.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100000000000001000
.............................GACAATCCCTACAAGATGAACGGT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00100000000000100000
.....................GACTGACCGACAATCCCTACAAGATGA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00100000001000000000
.........AGCGCGATTTCCGACTGACCGACA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00100000000010000000
TTATGTACCAGCGCGATTTC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100010000000000000
................TTTCCGACTGACCGACAATCCCTACAAGA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2911.00100000010000000000
.......CCAGCGCGATTTCCGACT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00100100000000000000
........................TGACCGACAATCCCTACAAGATGAA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00100000000100000000
............................................................T-GCTAT----AGTCTGGCCTGCCTT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00110000000000000000
................TTTCCGACTGACCGACAATCCCTACAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.00100000001000000000
...........CGCGATTTCCGACTGACCGAC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100000000000100000
droSec2
TTATGTACCAGCGCGATTTCCGACTGACCGACAATCCCTACAAGATGAACGTAAGTGGTGT-GCTAT----AGTCTGGCCTGCCTACAACTGATTTTT----GTGCAGCAGGCAAA----------------------------------------------------------CCAT---------------------------------------CACG----TTT------TTACACTATTTTTGGCAGCAGTTTTGTTATCTCACAGCACTCA-----CTCCATTAATATGCACGCTCA-------TTTTAGTTTCGTT------------------------------------------GTTTG------------------------------------TT-------TGTTTTTCTCT----------------------------------------------------------G------AAGTATGTTGAA-----TAGATTCTTAATGGTG--------------------------------------------------------------------------------TTATTAAC---------------TTGCTTTCTSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
....GTACCAGCGCGATTTCCGACT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0011000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAA-----TAGATTCTTAATGGTG--------------------------------------------------------------------------------TT..............................2111.0010100
......ACCAGCGCGATTTCCGACT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010010
.............................GACAATCCCTACAAGATGAACGGT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010010
............................CGACAATCCCTACAAGATGAACGGT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010010
............................CGACAATCCCTACAAGATGAACG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010010
......ACCAGCGCGATTTCCGACTGACCGA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0011000
.................................ATCCCTACAAGATGAACGGT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2020.5010010
..................................TCCCTACAAGATGAACGGT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1920.5010010
dm3
TTATGTACCAGCGCGATTTCCGACTGACCGACAATCCCTACAAGATGAACGTAAGTGTTGT-GCTAT----AGTCTGGCCTGCCTACAACTGATTTTT----GTGCGGCAGGCCAA----------------------------------------------------------CCAT---------------------------------------CACG----TTT------TTACCCTATTTTTGGCAGCAGTTTTGTTATCTCACAGCACGCA-----CTTCATTATTATGCACGCTCA-------TTTTGGTTTCGTT------------------------------------------GTTTA---------------------------------------------TGTTTTTCTCT----------------------------------------------------------G------AAGTATGTTAAA-----TAGATTGTTTTTGGTG--------------------------------------------------------------------------------TTATGAAC---------------TAGCTTTCTSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
.........AGCGCGATTTCCGACTGACCGACAA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2517.0070000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000030004000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................GACTGACCGACAATCCCTACA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2116.0060000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001210000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............ATTTCCGACTGACCGACAATC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2114.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........AGCGCGATTTCCGACTGACCGACA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2413.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................CTACAAGATGAACGTAAGTGT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2113.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000010000100000000000000000000000
TTATGTACCAGCGCGATTTCCGACT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2512.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000
.....TACCAGCGCGATTTCCGACT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2012.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................ATCCCTACAAGATGAACGGT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2012.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................TTTCCGACTGACCGACAATCCCTA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2412.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................TTTCCGACTGACCGACAATC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2012.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................ATGAACGTAAGTGTTGT-GCTA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000011000000000000000000000000000000000
.........AGCGCGATTTCCGACTGACCGAC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2312.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............CGATTTCCGACTGACCGACAATCCC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........AGCGCGATTTCCGACTGACCGA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........CAGCGCGATTTCCGACTGACCGACA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........CGCGATTTCCGACTGACCGACA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................GTGTTGT-GCTAT----AGTCTGGCCT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
.........................GACCGACAATCCCTACAAGATGAAC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................TTCCGACTGACCGACAATCCCTA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............GCGATTTCCGACTGACCGACAA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........GCGCGATTTCCGACTGACCGACAATCCCT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................AACTGATTTTT----GTGCGGCAGG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................TCCGACTGACCGACAATCCCTACAA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................ACTGACCGACAATCCCTACAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................ACCGACAATCCCTACAAGATGAAC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........CGCGATTTCCGACTGACCGAC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000
.....TACCAGCGCGATTTCCG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
TTATGTACCAGCGCGATTTCC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000
..................................TCCCTACAAGATGAACGTAAGTG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................TTCCGACTGACCGACAATCCCTACA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................ACCGACAATCCCTACAAGAT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........GCGCGATTTCCGACTGACCGACA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....TACCAGCGCGATTTCCGACTGACC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........GCGCGATTTCCGACTGACCGACAATC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................AACTGATTTTT----GTGCGGCAGGC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................TTTGGCAGCAGTTTTGTTATCT..................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000
..............................................................................CCTGCCTACAACTGATTTTT----G.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................ACAAGATGAACGTAAGTGTTGT-..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000
...TGTACCAGCGCGATTTCCGACT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000
......................ACTGACCGACAATCCCTACAAGATGAA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......ACCAGCGCGATTTCCGACT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................CA-------TTTTGGTTTCGTT------------------------------------------GTTTA---------------------------------------------.............................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000
.............................GACAATCCCTACAAGATGAACGGTC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......CCAGCGCGATTTCCGACTGACCGAC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................ACAATCCCTACAAGATGAACGGT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................TTCCGACTGACCGACAATCCCTACAAGA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................CTACAACTGATTTTT----GTGCGGC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....GTACCAGCGCGATTTCCGACT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........CAGCGCGATTTCCGACTGACCGACAA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................GTTTTGTTATCTCACAGCACG.........................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
...TGTACCAGCGCGATTTCC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................CAATCCCTACAAGATGAACGGTC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................CCGACTGACCGACAATCCCTACAA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................CAACTGATTTTT----GTGCGGCA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................GACTGACCGACAATCCCTACAAGATGAAC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....TACCAGCGCGATTTCCGACTGACCGACAA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2911.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................TCA-------TTTTGGTTTCGTT------------------------------------------GTT............................................................................................................................................................................................................................................................................1920.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000
..................................TCCCTACAAGATGAACGGT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1930.3310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................CCCTACAAGATGAACGGT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1860.1710000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................CA-------TTTTGGTTTCGTT------------------------------------------GTT............................................................................................................................................................................................................................................................................18200.1530000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droEre2
TTATGTACCAGCGCGATTTCCGACTGACCGACAATCCCTACAAGATGAACGTAAGTGGTAT-GCTAT----AGTCTGGCTTGCCTACAGCTGATTTTT----GTACGGCCGGCCAG----------------------------------------------------------CTAT---------------------------------------CACGCTCGTTT------TTGCCCTATTTCTGTCAGCAGTTTGGTTATCTCATATCACTCA-----CTCCATAAATATGCACGCTCC-------TTTT-GTTTCGTT------------------------------------------GTTTA---------------------------------------------TGTTTTTCTAT----------------------------------------------------------A------AAGTATATTAAA-----TAGATGGATTTTGGTG--------------------------------------------------------------------------------TTATTAAC---------------TTGTTTTCGSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
.............................GACAATCCCTACAAGATGAAC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0011000000
...TGTACCAGCGCGATTTCCG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010001000
..................TCCGACTGACCGACAATCCCTAC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0011000000
.TATGTACCAGCGCGATTTCCGACT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0011000000
.............................GACAATCCCTACAAGATGAACG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000100
....GTACCAGCGCGATTTCCGT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010001000
.......CCAGCGCGATTTCCGACT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0011000000
..........................................................................................................................................................................................................................................TTGCCCTATTTCTGTCAGCAGT............................................................................................................................................................................................................................................................................................................................................................................................2211.0011000000
...................CCGACTGACCGACAATCCCTACA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0011000000
..........GCGCGATTTCCGACTGACCGACA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010100000
..................TCCGACTGACCGACAATCCCTACAAGA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0011000000
....GTACCAGCGCGATTTCCGACTGACCGA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000001
..................................TCCCTACAAGATGAACGGT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000010
............................CGACAATCCCTACAAGATGAACG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010001000
..................................TCCCTACAAGATGAACGGTC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2050.2010001000
droYak3
TTATGTACCAGCGCGATTTCCGACTGACCGACAATCCCTACAAGATGAACGTAAGTGGCAT-GCTAT----AGTCTGGCCTGCCTACAGCTGATTTTT----GTGC----GGCCAA----------------------------------------------------------CTAT---------------------------------------CACG----CTTTTGATTTTGGCATATTTCTGGCAGCAGTTTTGTTATCTCATAGC-CTCA-----CTCCATAAATATGCACGCTCA-------TTTTGGTTTTGTT------------------------------------------GTTTA---------------------------------------------TGTTTTTCTTT----------------------------------------------------------G------AATTATATTAATTGATTTAGATCGATATTGGTG--------------------------------------------------------------------------------TTATAAAC---------------TT-TTTTCGSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
..................................TCCCTACAAGATGAACGGT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1913.00301000200000
.........AGCGCGATTTCCGACTGACCGA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100000010000
.................................ATCCCTACAAGATGAACGGTC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00101000000000
......ACCAGCGCGATTTCCGACTGACCGACA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00101000000000
..ATGTACCAGCGCGATTTCCG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100000010000
....GTACCAGCGCGATTTCCGACT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100000010000
..............................ACAATCCCTACAAGATGAACGGTC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00110000000000
................TTTCCGACTGACCGACAATCCCTACA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00101000000000
.......CCAGCGCGATTTCCGACT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00100001000000
..............................ACAATCCCTACAAGATGAACGGT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00101000000000
..ATGTACCAGCGCGATTTCCGACT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00101000000000
....GTACCAGCGCGATTTCCGAC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100100000000
................................AATCCCTACAAGATGAACGGTC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100100000000
..........GCGCGATTTCCGACTGACCGAC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00110000000000
droEug1
TGATGTACCAGCGCGATTTCCGATTGACCGACAATCCCTACAAGATGAACGTAAGTGATATTGCTAC----AGACTGGCCTGCTTACAACAAATTTAT----TT-----TGGCCA---------CTCATT--------------------------------------------TTAT---------------------------------------CACG----TTTTTGTTGTTGCTGGATTTTTGGCAGCTGTTTTGTTATCTCATAGTGTTGTTTAGTTTTCATAT---------------------------------------------------------------------------------------------------------------AAAGGTTTTGA------CCTATAATGTATTA--------------------------------------------------A-------------------C-----AAAATGG---------------------------------------------------------T-------AAACCTATTGATTTTTTAG-----T----ATA---TC----------ATGTCATATSizeHit CountTotal NormTotal
No Reads
droBia1
TGATGTACCAGCGCGACTTCCGACTAACCAACAATCCCTACAAAATGAACGTGAGTGATAT-GCTGT----AGTCTGGCCTGCTTAAAAATCATTTTC----G-------GGTC-------------------------------------------------------------------------------------------------------------------------------ATTTTTGGCGTCACT--TGTTATC--ATTGAGCTTT-----GCCCGTAAACGTTTACGTTTC-------TTTT---------------------------------------------------------------------------------------AAGGGTTTTGGTTAAATTACTTTTCGTGTTTTATCAGT--------------------------------------------------------------------------------------------------------------------------------------------T------------------------TCAACAAA---------------TT-TTTATTSizeHit CountTotal NormTotal
No Reads
droTak1
TTATGTACCAGCGCGACTTTCGACTGACCAACAATCCCTACCAGATGAACGTAAGTGATAT-GCTAC----AGTCTGGCCTGATTAAAAAGTATTTTT----GA-----AGGCC-------------------------------------------------------------------------------------------------------------------------------ATTTCTGGCAGCTGT--TGTTATCTCATAGAGCTTT-----TTCCAAAAATGTTCACATTTG-------TTTTGAGTTTTT------------------------------------------------T-------------------------------TTGGTTTTGGTTACCCTGTATTTTGTATTTAAGAGGTTTTAAATCACTAATGTCTAAAGATTAATTTTATTGTTCGAGTAACACAATATCTTTT-----TA-----TGGATTGCTTCTGGTA--------------------------------------------------------------------------------CTATTCACAA---------TATTTTTCTTTATSizeHit CountTotal NormTotal
No Reads
droEle1
TTATGTACCAGCGCGATTTCCGACTGACCGACAATCCCTACAAGATGAACGTAAGTGATAC-GCTAC----AGTCTGGCCTGCTTACAACTAATCTATTTATGTACA--------------------------------------------------------------------------------------------------------------TATG----TGT------TTCCCCGGTTTTCGGCCATAGTTTCATTATCTCTTGCACTTAT-----TTTCAAACA--AACTTGTTAA--------------------------------------------------------------------------------------------------ATGGGATTTGGTTATAATTTACTTTATATTT--------------------------------------------------T-C------AAGTGCGT----------TG-------------------------------------------------------------T-------ATATTTATTAGTTTGTTTATATTATT-TTCGCTTTCCATGTATTACTTTTCTTAGASizeHit CountTotal NormTotal
No Reads
droRho1
TAATGTACCAGCGCGATTTCCGACTGACCGACAATCCCTACAAGATGAACGTAAGTGATAT-GCTAC----AGTCTGGCCTGCGTACAATTAATCTAT-----------TGGCCAGCATTGGCGCTTATG--------------------------------------------CTAT---------------------------------------CACA----TTTTTGTGTTTCCCCGGTTTTTGGCCATGGTTTCGTTATCTCATACAGCTAT-----TTTCATAAATATTGA---TCT-------TTTT---------------------------------------------------------------------------------------ATGGGATTTAGTTATATTTTACTTTATGTTT--------------------------------------------------A-G------AATTGTAT----------TGATTGCTTTTATAT--------------------------------------------------------------------------------TTTTTCACAT-------------TCCATTTATSizeHit CountTotal NormTotal
No Reads
droFic1
TTATGTACCAGCGCGATTTCCGACTGACCGACAATCCCTATTTGATGAACGTAAGTGATAT-AGTGTTTCTAGTCTTGCTTGCTTTAGACCTATTTTT----GT-----AGGCCAGCAT-------------------------------------------------------TGGT---------------------------------------CACG----TTT------TGATA-----CTCGGCAATAGTT-TGTTATCTCACCCTAACAA-----TTCCGAAAATATTCA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droKik1
TGATGTACCAGCGCGATTTCCGACTGACCGACAATCCCTATTTGATGAACGTAAGTGATAT-GCT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droAna3
TGATGTACCAGCGCGATTTCCGATTGACCAACAATCCCTATCAGATGAACGTAAGTGGTTT----------AGTTCGACCTGGTT-CTCTGCATTTTC------------------------CCCTCATTTGATCGTTTTGTGGTGTTTTTGATGGTGCCGGGTGTTA---------T-------------------------ACCAAATTCTT---CACG----TTA------TTTCC---------------------------------------------------------------------------------------------ATTTCGATTGCATGTCCGGAAAT-ATTGTTT-------TTTAATTTGGTTTATTGACTATATCATTTTGGAGGGATTTGGTTTGAATAT-------------------------------------------------------------------------------------------------------TGTATCGTACTGTGTTCGATCATTTGTCATAATTTTTCAAAGGCATTTTGTTATTT------------------------T---CAAA---------------AAGATTATCSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
......................................TATCAGATGAACGTAAGTGGT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2112.002000020
.GATGTACCAGCGCGATTTCC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2012.002100010
...TGTACCAGCGCGATTTCCGATT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001000010
...TGTACCAGCGCGATTTCCG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001010000
...............................................................................................................................ATTTGATCGTTTTGTGGT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001001000
............................CAACAATCCCTATCAGATGAACGGT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001010000
....GTACCAGCGCGATTTCCGATT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001100000
...TGTACCAGCGCGATTTCCGATTGACC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001100000
..ATGTACCAGCGCGATTTCCGATTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001100000
................................AATCCCTATCAGATGAACGGT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000001
..ATGTACCAGCGCGATTTCCGATTGA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001000010
..............................ACAATCCCTATCAGATGAACG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000010
......................ATTGACCAACAATCCCTATCAGATGAAC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.001000001
..............................ACAATCCCTATCAGATGAAC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000001
.GATGTACCAGCGCGATTTCCGAT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001100000
..............GATTTCCGATTGACCAACA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001100000
..................................TCCCTATCAGATGAACGGTC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2040.251000100
droBip1
TGATGTACCAGCGCGATTTCCGATTGACCAACAATCCCTATCAGATGAACGTAAGTGTTTT----------AGCTTGGCCTGGTT-CTCTGCATTTTT------------------------CCCTCATTTAATCGC--------GTTTTT--TGGTGCTGGCTGTTAGAAAAACTAT---------------------------------------CAAA----T---------------------------------------------------------TACAGAATTATCCACGATCTATGGGCGATTGGGTTTTAAAGTTAATTCCATTTCGATTGCATATCCAAAAATGATTGGTT-------TTTAATTTGTTTTATTGACTA-------------------------------------------------------------------------------------------ACACATTTTCAACA-----CA-----AAAACAGGATCAGG-------------------------------------------------------------------------------------------------------------ATTGASizeHit CountTotal NormTotal
No Reads
dp5
TGATGTACCAACGCGATTTCCGACTGAC-GATTATCCGTATGTAATTAATATTTGTT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GATAGGTGT-----TTTCGTATTCTCAGGC-----TTCCTC-----------------------------------------------------------------ATGAT-----TG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
No Reads
droPer2
TGATGTACCAGCGCGATTTCCGACTGAC-GATTATCCGTATGTAATTGATATTTGTT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GATAGGTGT-----TTTCGTATTCTCGGGC-----TTCCTC-----------------------------------------------------------------ATGAT-----TG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
.....................................................................................................................................................................................................................................................................TTTCGTATTCTCGGGC-----TTCCTC-----------------------------------------------------------------ATGAT-----.................................................................................................................................................................................................................................................................................2711.001100000
.....................................................................................................................................................................................................................................................................TTTCGTATTCTCGGGC-----TTCCT.............................................................................................................................................................................................................................................................................................................................................................2111.001100000
....GTACCAGCGCGATTTCCGACT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001100000
droWil2
TTATGTATCAACGCGACTTTCGACTGACCAACAATCCATATTTGATGAATGTAAGTGCTAA----------AGATTAATCAAAG-ACATCTGATTTTC------------------------ATTTGATTTTTGCATGTTTTCGAGTTAGTTAAGGTATAAGCAT---------AAAT-------------------------AACGGTGGTTGTAT-----------------------------------------------T-----------------------------------TCA-------TTTTAATTT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCCACTGTTTACAGTTGGTCTATG--------------------------------------------------------TAAA------------------------TAACSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
..........ACGCGACTTTCGACTGACC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1915.00540010
.........AACGCGACTTTCGACTGACC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2013.00330000
.........AACGCGACTTTCGACTGACCAACAATCC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2812.00220000
TTATGTATCAACGCGACTTTCGACTGACC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2912.00220000
..........ACGCGACTTTCGACTGACCAACAATCC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2712.00211000
..ATGTATCAACGCGACTTTCGACT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00100010
......ATCAACGCGACTTTCGACT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100010
..ATGTATCAACGCGACTTTCGACTGACCA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.00110000
.........AACGCGACTTTCGACTGACCAACAATCCA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2911.00110000
...................TCGACTGACCAACAATCCATAT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00110000
.TATGTATCAACGCGACTTTCGACT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00101000
........CAACGCGACTTTCGACTGACCAACAATCC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2911.00101000
..ATGTATCAACGCGACTTTCGACTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00100100
..................TTCGACTGACCAACAATCC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00101000
.........AACGCGACTTTCGACTGACCAAC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00110000
.TATGTATCAACGCGACTT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00100010
...................TCGACTGACCAACAATCCATATTTGAT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00101000
....................CGACTGACCAACAATCCATATTTGAT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00110000
droVir3
TTATGTACCAGCGCGATTTCCGACTGACCAACAATCCCTACATTATGAACGTAAGTGATAT--CTCT----AATTTTAGTTTCCTAT--------------------GCATGCCAA----------------------------------------------------------CTATTATCGACCTGTTTCATTTGTTTAACTATGTTGATTGAGT-----------------------------------------------------------------------------------------------TTCATTTCATT------------------------------------------ATTT--------------------------------------------------------------------------------------------------------------------------------------------------------GTA--------------------------------------------------------------------------A-----T----ATG---------------TCACGTTCTSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
....GTACCAGCGCGATTTCCGACT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2112.002000000000000001000000000000001000000000000000000000000000000000
.................................ATCCCTACATTATGAACGGT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000000000000000000010000000000000000000000000000000000000000000
.....................GACTGACCAACAATCCCTACA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001001000000000000000000000000000000000000000000000000000000000000
....GTACCAGCGCGATTTCCGACTGACC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001000100000000000000000000000000000000000000000000000000000000000
.............................AACAATCCCTACATTATGAACGGT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001000000000000000000000000000000010000000000000000000000000000000
.......CCAGCGCGATTTCCGACTGACC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001000000000000000000010000000000000000000000000000000000000000000
.................................ATCCCTACATTATGAACGT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001000000000000000001000000000000000000000000000000000000000000000
......ACCAGCGCGATTTCCGACTGACC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001000000000000000001000000000000000000000000000000000000000000000
........................TGACCAACAATCCCTACATTATGAACGGT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2911.001001000000000000000000000000000000000000000000000000000000000000
..ATGTACCAGCGCGATTTCCGACTGA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001000000000000000000100000000000000000000000000000000000000000000
.TATGTACCAGCGCGATTTCC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000000000000000000010000000000000000000000000000000000000000000
......ACCAGCGCGATTTCCGACT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001000000000000000100000000000000000000000000000000000000000000000
....GTACCAGCGCGATTTCCGAC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000100000000000000000000000000000000000000000000000000000000000
.........AGCGCGATTTCCGACTGACCAACA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001001000000000000000000000000000000000000000000000000000000000000
...............ATTTCCGACTGACCAACAAT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001010000000000000000000000000000000000000000000000000000000000000
droMoj3
TTATGTATCAGCGCGATTTCCGACTGACCAACAATCCCTACGTAATGAATGTAAGTGATAT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
.........AGCGCGATTTCCGACTGACCAACAATC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.001100000
....GTATCAGCGCGATTTCCGACTGACCAAC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.001100000
......ATCAGCGCGATTTCCGACTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001100000
..............GATTTCCGACTGACCAACAATCCCTACGT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2911.001000010
droGri2
TGATGTATCAACGCGATTTCCGACTGACCAACAATCCGTACATAATGAATGTAAGTCGT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads

Generated: 05/19/2015 at 12:53 AM