ID:

dsi_4758

Coordinate:

3l:7534113-7534262 -

Confidence:

Candidate

Type:

Unknown

[View on UCSC Genome Browser {Cornell Mirror}]

Legend:

mature

star

mismatch in read

Predicted structure

-19.1	-18.9	-18.8

Flybase annnotation

intergenic

No Repeatable elements found

mature

star

Sense Strand Reads

CCAGTATTCGGGCAATACGCCCACCCTGCGTCTGCTATGCTCCATCACAGGTAAGTTGAAGCCGATCCATTACCGATCCGCCAGCTATGTGCCGGTCTTTTGTGTTGTTTGTACGATGTGATCCAAGCAGTTATTATTACCCATTACCGATTACCAATTACCAATTACCAATTACCATTACGACTATTACGAAGTATATCCACTTACATTTCCATTACGTTAGTTGATGTTTTTTGAGTATTAATGATCC ************************************************((((((((..((.((((.......)))).))..((.....)).(((...(((.((.(((.(((....((((((.........................))))))....))).))).)))))..)))....)))))..)))..........************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M023 head	M024 male body	SRR618934 dsim w501 ovaries	SRR553485 Chicharo_3 day-old ovaries	SRR553488 RT_0-2 hours eggs	SRR553487 NRT_0-2 hours eggs	SRR902009 testis
........................................................................................GTGCCGGACTTTTGTGTT................................................................................................................................................	18	1	1	2.00	2	2	0	0	0	0	0	0
.....................................................................................TTTGTGCCGGACTTTTGTGTT................................................................................................................................................	21	2	1	1.00	1	0	1	0	0	0	0	0
..............ATACGCCCACTCTGCGTT..........................................................................................................................................................................................................................	18	2	2	0.50	1	0	0	1	0	0	0	0
..............................................................................................GTCTTTTTTGTTGTTTGGAGGA......................................................................................................................................	22	3	2	0.50	1	0	0	0	1	0	0	0
.....ATTCGGGCTATACTTCCACC.................................................................................................................................................................................................................................	20	3	5	0.20	1	0	1	0	0	0	0	0
................................................................................................................................................TACCGATTACCAATT...........................................................................................	15	0	5	0.20	1	0	0	1	0	0	0	0
............CAATACGAGCACCCTGGGT...........................................................................................................................................................................................................................	19	3	9	0.11	1	0	0	0	0	0	1	0
............................................................................................................................................................................................................................TATTTGAAGTTTTTTGAGCATT........	22	3	9	0.11	1	0	0	1	0	0	0	0
..........GGCAATACGAGCACCCTGG.............................................................................................................................................................................................................................	19	3	20	0.10	2	0	0	0	0	2	0	0
..............................................................................................................................................................................................................................GAGGATGTTTTTGGAGTATT........	20	3	11	0.09	1	0	0	0	0	0	0	1
..............................TCTCCTATGCTCCACCA...........................................................................................................................................................................................................	17	2	11	0.09	1	0	0	0	1	0	0	0
.......................................................................................................................................ATTACCCAATCCCGATT..................................................................................................	17	2	20	0.05	1	0	0	0	0	1	0	0

Anti-sense strand reads

GGTCATAAGCCCGTTATGCGGGTGGGACGCAGACGATACGAGGTAGTGTCCATTCAACTTCGGCTAGGTAATGGCTAGGCGGTCGATACACGGCCAGAAAACACAACAAACATGCTACACTAGGTTCGTCAATAATAATGGGTAATGGCTAATGGTTAATGGTTAATGGTTAATGGTAATGCTGATAATGCTTCATATAGGTGAATGTAAAGGTAATGCAATCAACTACAAAAAACTCATAATTACTAGG ************************************************((((((((..((.((((.......)))).))..((.....)).(((...(((.((.(((.(((....((((((.........................))))))....))).))).)))))..)))....)))))..)))..........************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR902009 testis	SRR553487 NRT_0-2 hours eggs	SRR553488 RT_0-2 hours eggs	SRR553486 Makindu_3 day-old ovaries	SRR618934 dsim w501 ovaries	M053 female body	SRR553485 Chicharo_3 day-old ovaries	M023 head	M024 male body	GSM343915 embryo
..........................................................GTCGGCTAGGTCATGGCTA.............................................................................................................................................................................	19	2	1	5.00	5	5	0	0	0	0	0	0	0	0	0
..................................................................GGTAATGGCTAGGCG.........................................................................................................................................................................	15	0	1	2.00	2	0	0	2	0	0	0	0	0	0	0
.........................................................TTTCGGCTAGGTCATGGCTAA............................................................................................................................................................................	21	3	2	2.00	4	4	0	0	0	0	0	0	0	0	0
..........................................................GTCGGCTAGGTCATGGCTAA............................................................................................................................................................................	20	3	4	1.50	6	6	0	0	0	0	0	0	0	0	0
....ATAAGCTCGTTATGCGGACG..................................................................................................................................................................................................................................	20	3	5	1.00	5	0	5	0	0	0	0	0	0	0	0
....ATAAGCTCGTTATGCGGA....................................................................................................................................................................................................................................	18	2	2	1.00	2	0	1	0	1	0	0	0	0	0	0
.....TAAGCTCGTTATGCGGACG..................................................................................................................................................................................................................................	19	3	13	0.69	9	0	4	0	0	0	2	0	1	1	1
....ATAAGCTCGTTATGCGG.....................................................................................................................................................................................................................................	17	1	2	0.50	1	0	1	0	0	0	0	0	0	0	0
.....TAAGCTCGTTATGCGGA....................................................................................................................................................................................................................................	17	2	6	0.33	2	0	1	1	0	0	0	0	0	0	0
...................................................................................................................................................................................................TATAGGCGAGTGTTAAGGTAAT.................................	22	3	3	0.33	1	0	0	0	0	1	0	0	0	0	0
..................................................................................TCGACACAAGGGCAGAAAACA...................................................................................................................................................	21	3	8	0.13	1	1	0	0	0	0	0	0	0	0	0
........................................AAGTAGTGTCCATTCAA.................................................................................................................................................................................................	17	1	11	0.09	1	0	0	0	0	0	0	1	0	0	0
.............................................................................................................................................................................TGGTGATGCTGCGAATGCT..........................................................	19	3	14	0.07	1	1	0	0	0	0	0	0	0	0	0
..........................................................TTCGGCTACATGATGGCTA.............................................................................................................................................................................	19	3	14	0.07	1	0	0	0	1	0	0	0	0	0	0
..................................................................................................................................................................................................ATATAGGGGTATGTAAAGCT....................................	20	3	16	0.06	1	0	0	0	0	1	0	0	0	0	0
..........................................ATAGTGTCCATTCAA.................................................................................................................................................................................................	15	1	17	0.06	1	0	0	0	0	0	0	1	0	0	0
.............................................................................................................................................................................................................CGTAAGGGTAAGGCAATCA..........................	19	3	20	0.05	1	0	0	0	0	1	0	0	0	0	0

Generated: 04/24/2015 at 10:23 AM