ID:

dsi_4750

 Coordinate:

3l:16177857-16178006 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-11.1 -10.9 -10.8

Flybase annnotation

CDS [3l_16178007_16178159_+]; exon [3l_16178007_16179164_+]; intron [3l_16177687_16178006_+]

No Repeatable elements found

Sense Strand Reads

--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
TAATGTATACAAAAAAAAAACCTTATTGGAAGGCAGCTTTTCCTTTGGTTAGTTTTATATATTTACAATTCACTAGGTCACCAAACTATAATAGCAAACTAAATATAGCATTGATAAATCTAAAAATAGCTTTTCAAATCAGATGTGCGTCTAAAGTTCAATTTAATGACATTGTTTAACTCGAACTTCATCTATTTCAGAAAATCTGCGAAAAGCAGCAAGTGGTAACCGACTACGAGGCCGGTCGCGG
**************************************************(((((.........((((((((.(((((.......(((((.(((....)))..)))))..((((.(((.(((....))).)))))))...((((....))))........))))).))).))))).......))))).............************************************************** 		Read size # Mismatch Hit Count Total Norm Total M023
head
 M024
male body		 M025
embryo
 SRR553487
NRT_0-2 hours eggs
 SRR902009
testis
 SRR553488
RT_0-2 hours eggs
............................................................................................................................................................................TGTTTAACTCGAACTTCATCTATT...................................................... 24 0 1 2.00 2 2 0 0 0 0 0
..................................................................................................................................................................TTAATGACATTGTTTAACTC.................................................................... 20 0 1 1.00 1 0 1 0 0 0 0
.............................................................................................................................................................................GTTTAACTCGAACTTCATCTATTT..................................................... 24 0 1 1.00 1 0 0 1 0 0 0
.....................................................................................................................................................................TTGGCATTGTTTAACTAGAACT............................................................... 22 3 3 0.67 2 0 0 0 2 0 0
.....................................................................................................................................................................................................................AGCGGCAAGTGGTCACGGAC................. 20 3 7 0.14 1 0 0 0 0 1 0
..........................................................................................................................................................................................TTCATCTAGTTCAAAAAA.............................................. 18 2 20 0.05 1 0 0 0 0 0 1

Anti-sense strand reads

ATTACATATGTTTTTTTTTTGGAATAACCTTCCGTCGAAAAGGAAACCAATCAAAATATATAAATGTTAAGTGATCCAGTGGTTTGATATTATCGTTTGATTTATATCGTAACTATTTAGATTTTTATCGAAAAGTTTAGTCTACACGCAGATTTCAAGTTAAATTACTGTAACAAATTGAGCTTGAAGTAGATAAAGTCTTTTAGACGCTTTTCGTCGTTCACCATTGGCTGATGCTCCGGCCAGCGCC
**************************************************(((((.........((((((((.(((((.......(((((.(((....)))..)))))..((((.(((.(((....))).)))))))...((((....))))........))))).))).))))).......))))).............************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553486
Makindu_3 day-old ovaries
 SRR553485
Chicharo_3 day-old ovaries
 O002
Head
 SRR553487
NRT_0-2 hours eggs
 M024
male body		 SRR618934
dsim w501 ovaries
............................................................................................................................................................................................................AGACGCTTTTCGTCGTTCACCATTGGCT.................. 28 0 1 2.00 2 2 0 0 0 0 0
.....................................................................AGTGATCCAGTGGTTTGATATTATCGC.......................................................................................................................................................... 27 1 1 1.00 1 0 1 0 0 0 0
..............................................................................................................................................................................................AGATAAAGTCTTTTAGACGCT....................................... 21 0 1 1.00 1 1 0 0 0 0 0
..........................................................................................................................................AGTCTACACGCAGATTTCAAGTTAAATT.................................................................................... 28 0 1 1.00 1 0 1 0 0 0 0
.................................................................GTTAAGTGATCCAGTGGTTTG.................................................................................................................................................................... 21 0 1 1.00 1 0 0 1 0 0 0
.................................................................................................................................................................AGATTACTGTAACAAATTGAGCTTGAAG............................................................. 28 1 1 1.00 1 1 0 0 0 0 0
......AATGTTTTTTTTTTGTCATAACC............................................................................................................................................................................................................................. 23 3 4 0.25 1 0 1 0 0 0 0
............TATCTTTTGGAATAACCTT........................................................................................................................................................................................................................... 19 2 4 0.25 1 0 0 0 1 0 0
....................................................................................................................................................................................................................GTCGTCGTTCACCATTTG.................... 18 2 14 0.21 3 0 0 0 0 3 0
..................................................................................................................................ACAAGTTTAGTCTAC......................................................................................................... 15 1 12 0.17 2 0 0 0 2 0 0
............................................................................................................GTCACTATTTAGGTTTTTA........................................................................................................................... 19 2 9 0.11 1 0 0 0 0 1 0
.................................GTAGAAAAGGAAAGCAATCC..................................................................................................................................................................................................... 20 3 10 0.10 1 0 0 0 0 0 1
.............................................................................................................................................................AGTTAAAGTACTGTAA............................................................................. 16 1 17 0.06 1 0 1 0 0 0 0
..................................................................................................................................................................................................................................TAGGCTAATGCTCCGG........ 16 2 20 0.05 1 1 0 0 0 0 0

Generated: 04/24/2015 at 02:35 AM