ID:

dsi_4747

 Coordinate:

3l:8260871-8261020 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-17.1 -16.6 -16.5 -16.4

Flybase annnotation

intergenic

No Repeatable elements found

Sense Strand Reads

ACCACTCATCGCCACTCCATCGTTCGCACATTACACGGCATTATTTTTATGGATTATTTATTTATGCATGTTGATATGAACTTCATCGCTTTATTGAAAATGCTTTTTACAACACACCGCCCATTCGGCGTTGTCTCTCTATATGTTTGAATCACTTTTTTTTTAACGAATTTTCTCTGTGTGCTTGGATTTATTTGCAGTTGAATTTTCATATCGTAGAGGGCATAAAAAGGCTTAGCACTGGACCGGA
**************************************************...((....((..((.((.((..(((.((......(((.......((((.((.(((..(((..(((.((((.....)))).))).........)))..))).)).)))).......)))......)))))..)).)).))..))....))************************************************** 		Read size # Mismatch Hit Count Total Norm Total M024
male body		 SRR553486
Makindu_3 day-old ovaries
 SRR618934
dsim w501 ovaries
 M053
female body
 SRR553488
RT_0-2 hours eggs
 GSM343915
embryo
.................................................................................................................................GTTGTCTCTCTATATGTTTGAAT.................................................................................................. 23 0 1 1.00 1 1 0 0 0 0 0
..................................................................................................................................................................................................................................GAAAAGGCTTAGCACTGGACC... 21 1 1 1.00 1 1 0 0 0 0 0
................................................................................................................................................................................................................................ATAAAAAGGCTTAGCACTGGACC... 23 0 1 1.00 1 1 0 0 0 0 0
................................................................................................................................................................................................................................GTAAAAAGGCTTAGCACTGGACCGG. 25 1 1 1.00 1 1 0 0 0 0 0
................................................................................................................................................................................................................TCATATCGTAGAGGGCATAAAAAGGCT............... 27 0 1 1.00 1 0 1 0 0 0 0
.................................................................................................................ACACCGCCCGTCAGGCGTTG..................................................................................................................... 20 3 3 0.33 1 0 0 1 0 0 0
.................................................................................TTTATCGCGTTATTGAAAA...................................................................................................................................................... 19 2 6 0.17 1 0 0 1 0 0 0
.......................................................................................................................................................................GAGGTTTCTCTGCGTGCTTG............................................................... 20 3 7 0.14 1 0 0 0 1 0 0
.........................................................................................................................................TCGATATGTTTGAAT.................................................................................................. 15 1 20 0.05 1 0 0 1 0 0 0
...........................................................ATTTAGCCATGTTGATA.............................................................................................................................................................................. 17 2 20 0.05 1 0 0 0 0 1 0
...........................................................................................................................................................................................GATTTATTTGGAGTGGA.............................................. 17 2 20 0.05 1 0 0 0 0 1 0
...................................................................................................................AGAGCCCATTCGGAGTTGT.................................................................................................................... 19 3 20 0.05 1 0 0 0 0 0 1

Anti-sense strand reads

TGGTGAGTAGCGGTGAGGTAGCAAGCGTGTAATGTGCCGTAATAAAAATACCTAATAAATAAATACGTACAACTATACTTGAAGTAGCGAAATAACTTTTACGAAAAATGTTGTGTGGCGGGTAAGCCGCAACAGAGAGATATACAAACTTAGTGAAAAAAAAATTGCTTAAAAGAGACACACGAACCTAAATAAACGTCAACTTAAAAGTATAGCATCTCCCGTATTTTTCCGAATCGTGACCTGGCCT
**************************************************...((....((..((.((.((..(((.((......(((.......((((.((.(((..(((..(((.((((.....)))).))).........)))..))).)).)))).......)))......)))))..)).)).))..))....))************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR618934
dsim w501 ovaries
 SRR553486
Makindu_3 day-old ovaries
 SRR902009
testis
..............CAGGTAGCAAGCGTGGAA.......................................................................................................................................................................................................................... 18 2 9 0.11 1 1 0 0
......GTAGCGGCGAGGGAGCA................................................................................................................................................................................................................................... 17 2 19 0.05 1 1 0 0
...........................................................................................................ATGCTGTGAGGCGGGT............................................................................................................................... 16 2 20 0.05 1 0 1 0
............................................................................................................GGTTGTGAGGCAGGTAAGC........................................................................................................................... 19 3 20 0.05 1 0 0 1

Generated: 04/24/2015 at 10:47 AM