ID:

dsi_4740

 Coordinate:

2r:5870668-5870817 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-11.1 -11.0 -10.8

Flybase annnotation

exon [2r_5870590_5872128_-]; CDS [2r_5870590_5871990_-]

No Repeatable elements found

Sense Strand Reads

##########################################################################################################################################################################################################################################################
CCGCCGCCGCCAGTCAACAGCCCAACTCCAACGAAGAGCTCAGCGACTCGAGCATCCGGCGACTCAGCTTCGCTCAGCAGCAGCTCATCCTCGGCGACCACGATAGCATCGAGGGCAGGCGGGAAACACTGCACTATCAGTCGGTGGCTAGTGAATACTCCAACCAGGACTCCGGATCCGAGGACGAGAGCGAGGAGCAGGCGGATACTACAGAGCCACAGAACGCCAAGCCCATGCCGGCCTTCGGTGA
**********************************************************************************************************************************.((((((((.....))).))))).....(((.....)))(((((..........)).)))..********************************************************** 		Read size # Mismatch Hit Count Total Norm Total M023
head
 M024
male body		 SRR618934
dsim w501 ovaries
 O002
Head
 SRR553486
Makindu_3 day-old ovaries
 M025
embryo
 SRR553488
RT_0-2 hours eggs
 SRR902009
testis
..........................................GCGACTCGAGCATCCGGCGACT.......................................................................................................................................................................................... 22 0 1 2.00 2 2 0 0 0 0 0 0 0
...................................................................................................................................................................................................................AGAGCCACAGAACGCCAAGCCC................. 22 0 1 2.00 2 2 0 0 0 0 0 0 0
...........................................................................................................................................................................CCGGATCCGAGGACGAGAGCG.......................................................... 21 0 1 2.00 2 2 0 0 0 0 0 0 0
................................................................................................................................................................CAACCAGGACTCCGGATCCG...................................................................... 20 0 1 2.00 2 2 0 0 0 0 0 0 0
............................................................................................................................................................................................................ATACTACAGAGCCACAGAACGCC....................... 23 0 1 1.00 1 1 0 0 0 0 0 0 0
...................................GAGCTCAGCGACTCGAGCATCCGGCGAC........................................................................................................................................................................................... 28 0 1 1.00 1 0 0 0 0 0 1 0 0
........................ACTCCAACGAAGAGCTCA................................................................................................................................................................................................................ 18 0 1 1.00 1 0 0 0 1 0 0 0 0
.................................................................................................................................................................AACCAGGACTCCGGATCTTA..................................................................... 20 2 1 1.00 1 0 0 0 0 1 0 0 0
..................................................................................................................................GCACTATCAGTCGGTGGCT..................................................................................................... 19 0 1 1.00 1 1 0 0 0 0 0 0 0
.............................................................................................................................................................CTCCAACCAGGACTCCGGAT......................................................................... 20 0 1 1.00 1 0 1 0 0 0 0 0 0
..................................................................................................................................................................................CGAGGACGAGAGCGAGGAGCAGGCG............................................... 25 0 1 1.00 1 0 1 0 0 0 0 0 0
.......................................................................................................................................................................GACTCCGGATCCGAGGAC................................................................. 18 0 1 1.00 1 1 0 0 0 0 0 0 0
.............................................................................................................................................................CTCCAACCAGGACTCCGGATCCGAG.................................................................... 25 0 1 1.00 1 0 0 1 0 0 0 0 0
.................................................................................................................................................................................CCGAGGACGAGAGCGAGGAGCAG.................................................. 23 0 1 1.00 1 1 0 0 0 0 0 0 0
..........................................................................CAGCAGCAGCTCATCCTCG............................................................................................................................................................. 19 0 1 1.00 1 0 0 0 1 0 0 0 0
......................................................................................................ATAGCATCGAGGGCAGGC.................................................................................................................................. 18 0 1 1.00 1 1 0 0 0 0 0 0 0
....................................................................................TCATCCTCGGCGACCACGATAGCATC............................................................................................................................................ 26 0 1 1.00 1 0 0 1 0 0 0 0 0
...........................................................................................................................................................................CCGGATCCGAGGACGAGAG............................................................ 19 0 1 1.00 1 1 0 0 0 0 0 0 0
..............................................................................................................................CACTGCACTATCAGTCGGTG........................................................................................................ 20 0 1 1.00 1 1 0 0 0 0 0 0 0
......................................................................................................................................................GTGAACACTCTAACCAGCAC................................................................................ 20 3 6 0.17 1 0 1 0 0 0 0 0 0
.........................................................................................................................................................................................................................................ATGCAGGCCTTCGGT.. 15 1 8 0.13 1 0 0 0 0 0 0 1 0
..........................................................................................................................................AGTCGGTAGCTCGTGA................................................................................................ 16 2 16 0.06 1 0 0 1 0 0 0 0 0
....................................................................................................................................................................................AGGACGATAGGGAGGAGCTGG................................................. 21 3 18 0.06 1 0 0 0 0 0 0 0 1
..............................................................................................................................................................................GATCCTAGTACGAGAG............................................................ 16 2 19 0.05 1 0 0 0 0 0 0 1 0
..............................................................................................................................................................................................CGCGGAGCAGGCGGA............................................. 15 1 20 0.05 1 0 0 0 0 1 0 0 0

Anti-sense strand reads

GGCGGCGGCGGTCAGTTGTCGGGTTGAGGTTGCTTCTCGAGTCGCTGAGCTCGTAGGCCGCTGAGTCGAAGCGAGTCGTCGTCGAGTAGGAGCCGCTGGTGCTATCGTAGCTCCCGTCCGCCCTTTGTGACGTGATAGTCAGCCACCGATCACTTATGAGGTTGGTCCTGAGGCCTAGGCTCCTGCTCTCGCTCCTCGTCCGCCTATGATGTCTCGGTGTCTTGCGGTTCGGGTACGGCCGGAAGCCACT
**********************************************************.((((((((.....))).))))).....(((.....)))(((((..........)).)))..********************************************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR902009
testis
 SRR553487
NRT_0-2 hours eggs
 SRR553485
Chicharo_3 day-old ovaries
 SRR553488
RT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
.............AGTGGTCGGTTTGAGGGTGCT........................................................................................................................................................................................................................ 21 3 3 1.00 3 3 0 0 0 0
..................TCGGGTTGATGTTGTTTGTCG................................................................................................................................................................................................................... 21 3 11 0.09 1 0 1 0 0 0
...........................................................................................................................................................................................................ATATGATGTCTCGGT................................ 15 1 12 0.08 1 0 0 1 0 0
...............................................................................................................................................................................................................................GCGGGTCGGGTACGGGC.......... 17 2 13 0.08 1 0 1 0 0 0
........................................................GCTGCTAAGTCGAAGCGAA............................................................................................................................................................................... 19 3 20 0.05 1 0 1 0 0 0
........................................................................................................................................................CTTGTTAGGTTGGTCTTGA............................................................................... 19 3 20 0.05 1 0 0 0 0 1
...............TTGTCGGTTTGAGGATGCTC....................................................................................................................................................................................................................... 20 3 20 0.05 1 1 0 0 0 0
........................................CTCGCTGAGCTCGTAA.................................................................................................................................................................................................. 16 2 20 0.05 1 0 0 0 1 0
........................................................................................................................................................................................................................ATGTCCTGCGGTTCGG.................. 16 2 20 0.05 1 0 1 0 0 0

Generated: 04/24/2015 at 01:42 AM