ID:dsi_4652 |
Coordinate:3l:11698551-11698812 + |
Confidence:Candidate |
Type:Unknown |
[View on UCSC Genome Browser {Cornell Mirror}] |
| Legend: | mature | star | mismatch in read |
|
exon [3l_11698275_11698550_+]; CDS [3l_11698275_11698550_+]; CDS [3l_11698813_11699485_+]; exon [3l_11698813_11699485_+]; intron [3l_11698551_11698812_+]
No Repeatable elements found
| ##################################################----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------################################################## CCATACTGGACAGGAATGGCACTGAGATCAGACAGAACTTTGAACAGATGGTATGTGAGCACAAGTGGACTAATTAGCTTTTTTTGTCACCGAATTAATTTATCATCAAGCCAGTCTGCCTTGTCGTTGCTTTGTTTAAGATAACTTTTTCTTGTTTTTAATTGTATTCCGCCCGCTCTGGATTTTGTTCCAATTTTATAAAGTTAATTGCACTTTTTTAATGAAAATAATAATAGACAGTAGAATTCCACGATCGACAAACTTCCTGATAACCGAAGAACTTAACTATAATGTTTTTAATCTTTCTTTCAGCTCTCGGAACTGGGCCCGTCCATGCTAATCCTACCCATTATTGCTGTGCT **************************************************....((((..(((((((((((.....((((...........................)))).)))))).)))))..))))((((((...(((......(((((((((...(((((.(((.........((((......)))).......(((((.......)))))......))).)))))...)))))..)))).......)))))))))....((((.....(((((....(((......))).....)))))...))))************************************************** |
Read size | # Mismatch | Hit Count | Total Norm | Total | M053 female body |
M023 head |
O001 Testis |
SRR553486 Makindu_3 day-old ovaries |
SRR553485 Chicharo_3 day-old ovaries |
SRR618934 dsim w501 ovaries |
SRR553487 NRT_0-2 hours eggs |
SRR553488 RT_0-2 hours eggs |
M024 male body |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ..................................................................................................................................................................................................................................................................AAAGTTGATGATAACCGAAGA................................................................................... | 21 | 3 | 2 | 3.50 | 7 | 6 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 |
| CCATACTGGACAGGAATG........................................................................................................................................................................................................................................................................................................................................................ | 18 | 0 | 1 | 2.00 | 2 | 0 | 0 | 2 | 0 | 0 | 0 | 0 | 0 | 0 |
| .................................................................................................................................................................................................................................................................CAAAGTTGATGATAACCGAAGA................................................................................... | 22 | 3 | 1 | 2.00 | 2 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| ..................GCACTGAGATCAGACAGAACTTTGA............................................................................................................................................................................................................................................................................................................................... | 25 | 0 | 1 | 1.00 | 1 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| ........................................................................................................................................................................................................................................................................................................................CTCTCGGAACTGGGCCCG................................ | 18 | 0 | 1 | 1.00 | 1 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| ..ATACTGGACAGGAATGGCACT................................................................................................................................................................................................................................................................................................................................................... | 21 | 0 | 1 | 1.00 | 1 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| ...............................................................................................................................................................................................................................................................................................................................AACTAGACCCGTCCATGCTG....................... | 20 | 3 | 2 | 0.50 | 1 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 |
| .......................................................................................................................................................................................................................................................................................................................................CCGTCCAAGCTAATC.................... | 15 | 1 | 3 | 0.33 | 1 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 |
| .................................AGAACTTTGAAGAGA.......................................................................................................................................................................................................................................................................................................................... | 15 | 1 | 20 | 0.25 | 5 | 0 | 0 | 0 | 4 | 0 | 0 | 1 | 0 | 0 |
| ...................................................................................................................................................................................................................................................................AAGTTGATGATAACCGAAGA................................................................................... | 20 | 3 | 9 | 0.22 | 2 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 |
| .................................................................................................................................................................................................................................................................CAAAGTTGATGATAACCGAAG.................................................................................... | 21 | 3 | 5 | 0.20 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| .................................................................TGGACTCATCAGCTTTTTTTT.................................................................................................................................................................................................................................................................................... | 21 | 3 | 5 | 0.20 | 1 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 |
| ........................................................................................................................................................................................................................................................TACGATCGACAAACT................................................................................................... | 15 | 1 | 5 | 0.20 | 1 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 |
| ....................................................................................................................................................................................................................................................................................................................................GGCCCGTCCATGCTG....................... | 15 | 1 | 6 | 0.17 | 1 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 |
| ..................................................................................................................................TTTGTTGAAGATAAGTTTTTTT.................................................................................................................................................................................................................. | 22 | 3 | 15 | 0.13 | 2 | 0 | 0 | 0 | 0 | 0 | 0 | 2 | 0 | 0 |
| .....................................................................................................................................................................................................................................................................CTTCCTGATGACCGA...................................................................................... | 15 | 1 | 9 | 0.11 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 |
| ...............................................................................................TAATTTATCATCAGGCAA......................................................................................................................................................................................................................................................... | 18 | 2 | 11 | 0.09 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 |
| ...................................................................................................................................................................................................................................................................................................................TTCAGCTCCCGGAAC........................................ | 15 | 1 | 13 | 0.08 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 |
| ...........................................................................................................................................................................................................................................................................................................................TCGGAACTGGGCCCATG.............................. | 17 | 2 | 20 | 0.05 | 1 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 |
| ....................................................................................................................................................................................................................................................................AGTTGATGATAACCGAAGA................................................................................... | 19 | 3 | 20 | 0.05 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| .......................................................................AATCAGGTTGTTTTGTCAC................................................................................................................................................................................................................................................................................ | 19 | 3 | 20 | 0.05 | 1 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
|
GGTATGACCTGTCCTTACCGTGACTCTAGTCTGTCTTGAAACTTGTCTACCATACACTCGTGTTCACCTGATTAATCGAAAAAAACAGTGGCTTAATTAAATAGTAGTTCGGTCAGACGGAACAGCAACGAAACAAATTCTATTGAAAAAGAACAAAAATTAACATAAGGCGGGCGAGACCTAAAACAAGGTTAAAATATTTCAATTAACGTGAAAAAATTACTTTTATTATTATCTGTCATCTTAAGGTGCTAGCTGTTTGAAGGACTATTGGCTTCTTGAATTGATATTACAAAAATTAGAAAGAAAGTCGAGAGCCTTGACCCGGGCAGGTACGATTAGGATGGGTAATAACGACACGA
**************************************************....((((..(((((((((((.....((((...........................)))).)))))).)))))..))))((((((...(((......(((((((((...(((((.(((.........((((......)))).......(((((.......)))))......))).)))))...)))))..)))).......)))))))))....((((.....(((((....(((......))).....)))))...))))************************************************** |
Read size | # Mismatch | Hit Count | Total Norm | Total | SRR553488 RT_0-2 hours eggs |
SRR553485 Chicharo_3 day-old ovaries |
SRR553487 NRT_0-2 hours eggs |
SRR553486 Makindu_3 day-old ovaries |
SRR618934 dsim w501 ovaries |
M025 embryo |
M024 male body |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| .....................................................................................................................CGGAAGCGCTACGAAACAAA................................................................................................................................................................................................................................. | 20 | 3 | 10 | 2.30 | 23 | 7 | 4 | 11 | 1 | 0 | 0 | 0 |
| ................................................ACCATCCACTAGTGTTCA........................................................................................................................................................................................................................................................................................................ | 18 | 2 | 1 | 1.00 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 |
| ...ATGACATGTCCTTACGGTGACGCT............................................................................................................................................................................................................................................................................................................................................... | 24 | 3 | 1 | 1.00 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 |
| .....................................................................................................................................................................................................................................................................................................................................CGGGCAGGTACGATTAGGATG................ | 21 | 0 | 1 | 1.00 | 1 | 0 | 1 | 0 | 0 | 0 | 0 | 0 |
| .............................................................................................................................................................................................................................................................................ATTGGCGTCTTGTATTGATAGT....................................................................... | 22 | 3 | 2 | 0.50 | 1 | 0 | 0 | 0 | 0 | 1 | 0 | 0 |
| .............................................................................................................................................................................................................................................................................................................................................TAAGATTAGGATGGGT............. | 16 | 1 | 2 | 0.50 | 1 | 0 | 0 | 0 | 1 | 0 | 0 | 0 |
| ............................................................................................................................................................................GGTGAGACTTGAAACAAGGTT......................................................................................................................................................................... | 21 | 3 | 3 | 0.33 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 |
| .............................................................................................................................................................................................................................................................................................................................................TAAGATTAGGATGGG.............. | 15 | 1 | 4 | 0.25 | 1 | 0 | 0 | 0 | 1 | 0 | 0 | 0 |
| ..................................................................................................................................AAACTCATTCTATTGAAAAATA.................................................................................................................................................................................................................. | 22 | 3 | 4 | 0.25 | 1 | 0 | 0 | 1 | 0 | 0 | 0 | 0 |
| .............................................................................................................................................................................................................................................................................ATTGGCGTCTTGTATTGAT.......................................................................... | 19 | 2 | 8 | 0.13 | 1 | 0 | 0 | 0 | 0 | 1 | 0 | 0 |
| ..............................................................................AAAAAACCAGTGCTTTAATTA....................................................................................................................................................................................................................................................................... | 21 | 3 | 20 | 0.10 | 2 | 0 | 1 | 0 | 0 | 0 | 0 | 1 |
| ..........................................................................................................................................................................GGGGCGAGCCCTAACACAA............................................................................................................................................................................. | 19 | 3 | 13 | 0.08 | 1 | 0 | 0 | 0 | 0 | 1 | 0 | 0 |
| ...............................................................................................................................................................................GAGCCCTAAAACAAGATTC........................................................................................................................................................................ | 19 | 3 | 15 | 0.07 | 1 | 0 | 0 | 0 | 0 | 0 | 1 | 0 |
| ..............................................................................AAAAAAACACTGGCTT............................................................................................................................................................................................................................................................................ | 16 | 1 | 17 | 0.06 | 1 | 0 | 0 | 0 | 1 | 0 | 0 | 0 |
| .........................................................................................................................................................................................................................................ATCTGTCAGCTTAAG.................................................................................................................. | 15 | 1 | 17 | 0.06 | 1 | 0 | 0 | 1 | 0 | 0 | 0 | 0 |
| ...................................................................................................................................................................................................................AGAAAAATTGACTTTTATTATT................................................................................................................................. | 22 | 3 | 18 | 0.06 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 |
| .....................GACCCTAGTCTGTCTCGG................................................................................................................................................................................................................................................................................................................................... | 18 | 3 | 20 | 0.05 | 1 | 0 | 0 | 0 | 1 | 0 | 0 | 0 |
| .................................................................................................................................................................................................................................................................................................................................GAGCCGGGAAGGTACG......................... | 16 | 2 | 20 | 0.05 | 1 | 0 | 0 | 0 | 0 | 1 | 0 | 0 |
| ....................TCACTCTGGTCTGTCT...................................................................................................................................................................................................................................................................................................................................... | 16 | 2 | 20 | 0.05 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 |
Generated: 04/24/2015 at 10:38 AM