ID:

dsi_4631

 Coordinate:

3l:7530976-7531125 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

Flybase annnotation

intergenic

No Repeatable elements found

Sense Strand Reads

TGTTGAGTTTATGGTTTCGTTTGAGAAATTAGTTCAACAATTTTGGAATTAATTCAATATTTATCTGCTAATGAGACAACAGTAGAGATTTTCAAGAGTTTTTACATACATATATGTAGTCTATGCGTAAACCCCATTTTCCAAGGCGTGAGACCTGCAATTGAACGTTTCCGTATTCCATCTAACTAATCCATCGCCAGGCGGACCATCTCGTGCTCAATGGGAAGATGTCACCGGTTCCACGCCCTTG
**************************************************..((((((.....(((.......))).....((((((((((....)))))))))).........((((((((((((...................)))).))).)))))))))))...................................************************************************** 		Read size # Mismatch Hit Count Total Norm Total M024
male body		 M023
head
 SRR553487
NRT_0-2 hours eggs
 M025
embryo
 M053
female body
 SRR618934
dsim w501 ovaries
 SRR553486
Makindu_3 day-old ovaries
 SRR902009
testis
 SRR553488
RT_0-2 hours eggs
..............................................................................................................................................................................................................................GGAAGAGGTCATCGGTTC.......... 18 2 3 100.00 300 242 52 2 4 0 0 0 0 0
..............................................................................................................................................................................................................................GGAAGAGGTCATCGGTTCGA........ 20 3 5 4.40 22 18 3 0 0 1 0 0 0 0
..............................................................................................................................................................................................................................GGAAGATGTCATCGGTTC.......... 18 1 1 3.00 3 0 3 0 0 0 0 0 0 0
.........................................................................................................................................................................................CTAATCCATCGCCAGGCG............................................... 18 0 1 1.00 1 0 1 0 0 0 0 0 0 0
................................................................................................................................................................................................................................AAGAGGTCACCGGTTCGACTCC.... 22 3 1 1.00 1 0 0 1 0 0 0 0 0 0
...................TTTGAGAAATAAGTTGAACA................................................................................................................................................................................................................... 20 2 4 0.50 2 0 0 0 0 0 0 2 0 0
.......................................................................................................................................................................................................GGTGGACCATCTCGTGTT................................. 18 2 2 0.50 1 0 0 0 0 1 0 0 0 0
..............................................................................................................................................................................................................................GGAAGAGGTCATCGGTTCGAC....... 21 3 3 0.33 1 0 0 1 0 0 0 0 0 0
......................................................................ATGAGAGAACAGTAGACA.................................................................................................................................................................. 18 2 3 0.33 1 0 0 0 0 0 1 0 0 0
..............................................................................................................................................................................................................................GGAAGAGGTCATCGGCTC.......... 18 3 20 0.15 3 3 0 0 0 0 0 0 0 0
......................................................................AGGAGAGATCAGTAGAGATTTT.............................................................................................................................................................. 22 3 9 0.11 1 0 0 0 0 0 1 0 0 0
...........................................................................ACAACAGAAGAGATT................................................................................................................................................................ 15 1 13 0.08 1 0 0 0 0 0 1 0 0 0
...................TTTGAGAAATAAGTTGAACAC.................................................................................................................................................................................................................. 21 3 14 0.07 1 0 0 0 0 0 0 0 1 0
................................................................................................................................................................................................................................AAGAGGTCATCGGTTCTAC....... 19 3 16 0.06 1 0 1 0 0 0 0 0 0 0
......................................................................................................................................................................................................................................TCACCGGTTCGACCCC.... 16 2 20 0.05 1 0 0 0 0 0 0 0 0 1

Anti-sense strand reads

ACAACTCAAATACCAAAGCAAACTCTTTAATCAAGTTGTTAAAACCTTAATTAAGTTATAAATAGACGATTACTCTGTTGTCATCTCTAAAAGTTCTCAAAAATGTATGTATATACATCAGATACGCATTTGGGGTAAAAGGTTCCGCACTCTGGACGTTAACTTGCAAAGGCATAAGGTAGATTGATTAGGTAGCGGTCCGCCTGGTAGAGCACGAGTTACCCTTCTACAGTGGCCAAGGTGCGGGAAC
**************************************************..((((((.....(((.......))).....((((((((((....)))))))))).........((((((((((((...................)))).))).)))))))))))...................................************************************************** 		Read size # Mismatch Hit Count Total Norm Total O001
Testis
 SRR618934
dsim w501 ovaries
 SRR553488
RT_0-2 hours eggs
 SRR902008
ovaries
............................................................................................................................................GGTTCCGCACTCTGGACG............................................................................................ 18 0 1 1.00 1 1 0 0 0
...................AAACTCTTTATTCAACTTG.................................................................................................................................................................................................................... 19 2 5 0.20 1 0 0 1 0
......................................................................................................................................................................CAAAGCCATAAGGTAG.................................................................... 16 1 5 0.20 1 0 1 0 0
...................................................TAAGTCATAAGTAGACGTTTA.................................................................................................................................................................................. 21 3 11 0.18 2 0 0 0 2
........................................................................................................................................................TGCACGTTACCTTGCAAAC............................................................................... 19 3 18 0.06 1 0 0 1 0
.......................................................................................................................................................................AAAGCCATAAGGTAG.................................................................... 15 1 20 0.05 1 0 1 0 0
...................................................................................................AAAATGTATGTATTTCCA..................................................................................................................................... 18 2 20 0.05 1 0 1 0 0

Generated: 04/24/2015 at 10:21 AM