ID:

dsi_4624

 Coordinate:

2l:21872215-21872407 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-19.5 -19.1 -19.0

Flybase annnotation

intergenic

Repeatable elements

NameClassFamilyStrand
DNAREP1_DMRCHelitron+
mature
  1. dsi_4624  2l:21872362-21872376 -
  2. 2l:22562700-22562714 -
  3. 2l:22687147-22687161 -
  4. 2l:22978751-22978765 -
  5. 2r:198285-198299 -
  6. 2r:684742-684756 -
  7. 2r:713886-713900 -
  8. 2r:1374199-1374213 -
  9. 2r:1515834-1515848 -
  10. 2r:2179768-2179782 -
  11. 3l:24005977-24005991 -
  12. x:14451216-14451230 -
  13. node_99413:433-447 -
  14. node_98929:2235-2249 -
  15. node_76011:9310-9324 -
  16. node_64906:1238-1252 -
  17. node_8990:8113-8127 -
  18. node_66608:22-36 -
  19. node_65711:105-119 -
  20. node_76993:2648-2662 -
star
  1. 2l:16246030-16246049 +
  2. 2l:21033581-21033600 -
  3. dsi_4624  2l:21872292-21872311 -
  4. 2l:22459688-22459707 +
  5. 2l:23082322-23082341 +
  6. 2r:1577096-1577115 +
  7. 2r:1626268-1626287 +
  8. 2r:2620050-2620069 -
  9. dsi_30313  3l:22775054-22775073 +
  10. 3l:23123198-23123217 -
  11. 3r:5337402-5337421 -
  12. 3r:7076223-7076242 -
  13. 4:58350-58369 -
  14. 4:152893-152912 -
  15. 4:803582-803601 -
  16. x:19495934-19495953 +
  17. x:19887855-19887874 -
  18. node_92652:189-208 -
  19. node_39788:9255-9274 +
  20. node_19457:2508-2527 -

Sense Strand Reads

TTCACCCTGAAGAAGTGGTTAAAATCCGTTTGTCAAATACTCCAATAAAGGTATTCTAATCTGACGAACACACAAGCTCTTTGAGCTAGCCGCTGCAACTAGTAGCGAGCAGAATCAAGCAAAACAGTTTGTTACACTTCGTATCGTCGGAAACGCTTTCTTCTGCCTGTTTCATACTTATTATTCTATGACTAACGGGTATAATAATGTCAAATTCTACAATAATTGAATCTTTTTTTTCAGTAAATTACTTTTGAAGGACACACATGCTTGCTTTTATCCTTACTATTCTG
*********************************************************************************.........((((((.....)))))).((((((.(((((......)))))........(((.((....)).))).....))))))******************************************************************************************************************************* 		Read size # Mismatch Hit Count Total Norm Total O001
Testis
 SRR553487
NRT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
 SRR902009
testis
 SRR553485
Chicharo_3 day-old ovaries
 SRR902008
ovaries
 M024
male body		 SRR553488
RT_0-2 hours eggs
.........................................................................................................................................................................................................................................................ACTTTTGAAGGACACACA.......................... 18 0 2 1.00 2 2 0 0 0 0 0 0 0
...........................................................................................................................................................................................................................................................TTTTGAAGGACACACATGCTT..................... 21 0 2 0.50 1 0 0 1 0 0 0 0 0
.................................................................................................................................................................TCTGCCTGTTACATACATATTAT............................................................................................................. 23 2 3 0.33 1 0 1 0 0 0 0 0 0
.....................................................................................................................................................................................................................................................AATCACTGTTGAAGGACA.............................. 18 2 3 0.33 1 0 1 0 0 0 0 0 0
....................................................ATTCTAGTCCGACGATCA............................................................................................................................................................................................................................... 18 3 20 0.30 6 0 0 0 6 0 0 0 0
.........................................................................................................................................................................TTTCATACTTATTAGT............................................................................................................ 16 1 16 0.13 2 0 0 0 0 2 0 0 0
..............................................................................................................................................................TCTTCTGCCTGTTACATACTTATTT.............................................................................................................. 25 2 8 0.13 1 0 0 0 0 0 1 0 0
.....................................................TTCTAATCCGACGATCA............................................................................................................................................................................................................................... 17 2 9 0.11 1 0 0 0 1 0 0 0 0
.................................................................................TGAGCTAGCCGCTGC..................................................................................................................................................................................................... 15 0 20 0.10 2 0 0 2 0 0 0 0 0
..................................................................................................................................................TCGGAATAGCTTTCTTCTGCCTGTTTT........................................................................................................................ 27 3 11 0.09 1 0 1 0 0 0 0 0 0
......................................................................CACAAGATCTTTGAGCTG............................................................................................................................................................................................................. 18 2 11 0.09 1 0 0 0 0 0 0 1 0
.............................................................................................................................................................TACTTCTCCCTGTTTCATACTC.................................................................................................................. 22 3 18 0.06 1 0 0 0 0 0 0 0 1
...................................................................................................TAGTAGCCAGCAGCATC................................................................................................................................................................................. 17 2 20 0.05 1 0 0 1 0 0 0 0 0
..................................................................................................................................................TCGGAAACGCTTTCTTCTGC............................................................................................................................... 20 0 20 0.05 1 0 0 1 0 0 0 0 0
..................................................................................GAGCTAGCCGCTGCAAC.................................................................................................................................................................................................. 17 0 20 0.05 1 0 0 1 0 0 0 0 0
.................................................................................TGAGCTAGCCGCTGCAATTTGTAGCGAG........................................................................................................................................................................................ 28 2 20 0.05 1 0 1 0 0 0 0 0 0
................GGTTCAAATCCGTTTGC.................................................................................................................................................................................................................................................................... 17 2 20 0.05 1 0 0 0 0 1 0 0 0

Anti-sense strand reads

AAGTGGGACTTCTTCACCAATTTTAGGCAAACAGTTTATGAGGTTATTTCCATAAGATTAGACTGCTTGTGTGTTCGAGAAACTCGATCGGCGACGTTGATCATCGCTCGTCTTAGTTCGTTTTGTCAAACAATGTGAAGCATAGCAGCCTTTGCGAAAGAAGACGGACAAAGTATGAATAATAAGATACTGATTGCCCATATTATTACAGTTTAAGATGTTATTAACTTAGAAAAAAAAGTCATTTAATGAAAACTTCCTGTGTGTACGAACGAAAATAGGAATGATAAGAC
*******************************************************************************************************************************.........((((((.....)))))).((((((.(((((......)))))........(((.((....)).))).....))))))********************************************************************************* 		Read size # Mismatch Hit Count Total Norm Total SRR618934
dsim w501 ovaries
 SRR553488
RT_0-2 hours eggs
 SRR553487
NRT_0-2 hours eggs
 SRR553485
Chicharo_3 day-old ovaries
 SRR553486
Makindu_3 day-old ovaries
 SRR902009
testis
 GSM343915
embryo
.......................................................................................................................................................TTGCGAAAGAAGACGGACA........................................................................................................................... 19 0 20 1.15 23 23 0 0 0 0 0 0
.......................................................................................................................................................TTGCGAAAGAAGACGGA............................................................................................................................. 17 0 20 0.90 18 18 0 0 0 0 0 0
........................................................................................................................................................TGCGAAAGAAGACGGA............................................................................................................................. 16 0 20 0.70 14 14 0 0 0 0 0 0
......................TTAGGCAAACAGTTTATGAGGTTATT..................................................................................................................................................................................................................................................... 26 0 2 0.50 1 0 1 0 0 0 0 0
.........................................................TTATACTGCTTGTGTGTTTGAGAGACT................................................................................................................................................................................................................. 27 3 2 0.50 1 0 0 0 1 0 0 0
..........TCTTCACCAATTTTAGGCAAACAGT.................................................................................................................................................................................................................................................................. 25 0 2 0.50 1 0 0 1 0 0 0 0
.............................................................ACTGCTTGCGTGATAGAGAAACTCGAT............................................................................................................................................................................................................. 27 3 4 0.50 2 0 0 1 1 0 0 0
.....................................................................................................................TCGTTTTGTCAAACAATGTGAAGCAT...................................................................................................................................................... 26 0 2 0.50 1 0 1 0 0 0 0 0
.......................................................................................................................................................TTGCGAAAGAAGACG............................................................................................................................... 15 0 20 0.40 8 8 0 0 0 0 0 0
........................................................................................................................................................TGCGAAAGAAGACGGACA........................................................................................................................... 18 0 20 0.40 8 8 0 0 0 0 0 0
........................................................................................................................................................TGCGAAAGAAGACGG.............................................................................................................................. 15 0 20 0.35 7 7 0 0 0 0 0 0
.......................................................................................................................................................TTGCGAAAGAAGACGGACAA.......................................................................................................................... 20 0 20 0.20 4 4 0 0 0 0 0 0
.....................................................................................................CATCGCTCGTGTTAGTTT.............................................................................................................................................................................. 18 2 6 0.17 1 1 0 0 0 0 0 0
.....................................................................................................................................................CTTTGCGAAAGAAGACGGACA........................................................................................................................... 21 0 19 0.16 3 3 0 0 0 0 0 0
.....................................................................................................................................................CTTTGCGAAAGAAGACGG.............................................................................................................................. 18 0 20 0.15 3 3 0 0 0 0 0 0
........................................................................................................................................................TGCGAAAGAAGACGGAC............................................................................................................................ 17 0 20 0.15 3 3 0 0 0 0 0 0
..............................................................................................................................................................................................................................................AAGGCATTTAATGAAA....................................... 16 1 7 0.14 1 0 0 0 0 1 0 0
....................................................................................................................................................................................................................................TTAGAAAAAAAAGTGAT................................................ 17 1 7 0.14 1 1 0 0 0 0 0 0
.........................................................................................................................................................GCGAAAGAAGACGGACA........................................................................................................................... 17 0 20 0.10 2 2 0 0 0 0 0 0
..............................................................CTGCTTGTGTATTCGAGAGACTCGATCGG.......................................................................................................................................................................................................... 29 2 20 0.10 2 0 0 0 0 2 0 0
.......................................................................................................................................................TTGCGAATGAAGAGGGACAAAGTAT..................................................................................................................... 25 2 11 0.09 1 0 0 1 0 0 0 0
..........................................................................................................................................................................................................TTAGTACAGTTTAAGAGGTTT...................................................................... 21 3 12 0.08 1 0 1 0 0 0 0 0
..........................................................................................................................................................................................................................................AAAAAAGTCAATTTATGAAACC..................................... 22 3 13 0.08 1 0 0 1 0 0 0 0
..................................................................................................................................................AGCCTTTGCGAAAGAAGACGGACAA.......................................................................................................................... 25 0 14 0.07 1 0 0 1 0 0 0 0
.....................................................................................................................................................................................................................................CAGAAAAAAAAGTCGTTTGAT........................................... 21 3 16 0.06 1 1 0 0 0 0 0 0
....................................................................................................................................................CCTTTGCGAAAGAAGACGGACAA.......................................................................................................................... 23 0 17 0.06 1 1 0 0 0 0 0 0
..............................................................CTGCTTGTGTGTTCGAGAGACTCGAT............................................................................................................................................................................................................. 26 1 19 0.05 1 0 1 0 0 0 0 0
.................................................................................ACTCGATCGGCGACGT.................................................................................................................................................................................................... 16 0 20 0.05 1 1 0 0 0 0 0 0
.......................................................................TGTTCGAGAGACTCGAT............................................................................................................................................................................................................. 17 1 20 0.05 1 1 0 0 0 0 0 0
......................................................................................................................................................TTTGCGAAAGAAGACGGA............................................................................................................................. 18 0 20 0.05 1 1 0 0 0 0 0 0
.......................................................................................................................................................TTGCGAGAGAAGACG............................................................................................................................... 15 1 20 0.05 1 1 0 0 0 0 0 0
.................................................................................................................................................................................................................AGTTTGAGATGTTATTC................................................................... 17 2 20 0.05 1 0 0 0 0 1 0 0
............................................................................................................................................................................................................ATTATAGGTTAAGATGTTGT..................................................................... 20 3 20 0.05 1 0 0 0 0 0 1 0
.....................................................................................................................................................CTTTGCGAAAGAAGACGGA............................................................................................................................. 19 0 20 0.05 1 1 0 0 0 0 0 0
.......................................................................................................................................................TTGCGAGAGAAGACGGACA........................................................................................................................... 19 1 20 0.05 1 1 0 0 0 0 0 0
........................................................................................................................................................TGCTAAAGAAGACGG.............................................................................................................................. 15 1 20 0.05 1 1 0 0 0 0 0 0
........................................................................................................................................................TGCGAAAGAAGACGGACAA.......................................................................................................................... 19 0 20 0.05 1 1 0 0 0 0 0 0
.......................................................................TCTTCGAGAAACTCG............................................................................................................................................................................................................... 15 1 20 0.05 1 1 0 0 0 0 0 0
...............................................................................................................CTAAGTTCGTTATGTCAGA................................................................................................................................................................... 19 3 20 0.05 1 0 1 0 0 0 0 0
.....................................................................................................................................................................................................................................TAGCTAGAAAAGTCATTTAA............................................ 20 3 20 0.05 1 0 0 1 0 0 0 0
.....................................................................................................................................................CTTTGCGAAAGAAGACGCA............................................................................................................................. 19 1 20 0.05 1 1 0 0 0 0 0 0
....................................................................GTGTGTTCGAGAGACTCGATCTG.......................................................................................................................................................................................................... 23 2 20 0.05 1 0 0 0 0 0 0 1
...........................................................................AGAGAAACTCGATCGA.......................................................................................................................................................................................................... 16 2 20 0.05 1 0 1 0 0 0 0 0
......................................................................................................................................................TTTGCGAAAGAAGACGGACAA.......................................................................................................................... 21 0 20 0.05 1 1 0 0 0 0 0 0
................................................................................................................TGAGTTCTTTTTGTCAAA................................................................................................................................................................... 18 2 20 0.05 1 0 0 1 0 0 0 0
.....................................................................................................................................................CTTTGCGAAAGAAGACG............................................................................................................................... 17 0 20 0.05 1 1 0 0 0 0 0 0
...........................................................................................................................................................GAAAGAAGACGGACA........................................................................................................................... 15 0 20 0.05 1 1 0 0 0 0 0 0
.......................................................................................................................................................TTGCGAAAGAAGACGAA............................................................................................................................. 17 1 20 0.05 1 1 0 0 0 0 0 0
......................................................................................................................................................TTTGCGAAAGAAGAC................................................................................................................................ 15 0 20 0.05 1 1 0 0 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 2l:21872165-21872457 - dsi_4624 TTCA--CCCTGAAGAAGTGGTTAAAATCCGTTTGTCAAATACTCCAATAAAGGTATTCTAATCT----------------------------------------------------------------------------------GACGAACACACAAGCTCTTTGAGCTAGCCGCTGCAACT-AGTAGCGAGCAGAATCAA-GCAAAACAGTTTGTTA-------CACTTCGTATCG-------TCGGAAACGCTTTCTTCTGCCTGTTTCATACTT----------------------ATTATTCTATGACTA-ACGGGTATAATAAT-------------GTCA---------AA--TTCTACAATAATTGAATC--------------------------------------------------TTTT--------------------------------TT----TTCAGTAAATTACTTTTGAAGGACACACATGCTTGCTTTTATCCTTACTATTCTG
droSec2 scaffold_41:185807-186146 + TTCA--CCCTGAAGAAGTGGTTAAAATCCGCTTGTCAAATACTCCAATAAAGGTATTCTAATCT--GAAACGCTGTCTTCTCCTTGGTCGGGCAAT---------------------------TACACAAATCATAAATTCCGTGAGACGAACACACAAGCTCTTTGAGCTAGCCGCTGCAACT--------AGCAGAATCAA-GCAAAACAGTTTGTTA-------CACTGTGTATCG-------TCGGAAACGCTTTCTTCTGCCCGTTTCATACTT----------------------ATTATTCTATGACTA-ACGGGTATAATAAA-------------GTCA---------AA--TTCTACAATAATTGAATC--------------------------------------------------TTTTT-------------------------------TT----TTCAGTAAATTACTTTTGAAGGACACACATGCTTGCTTTTATCCTTACTATTCTG
dm3 chr3L:23262393-23262553 + TA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAATTTATAGTA-------TCGGAAACGCTTCCTTCTGCCTGTTACATACTT----------------------TTTACTCTACGACTA-ACGGGTATAATAAT-------------GTCA---------AA--TTCTACAATAATTAAATT--------------------------------------------------TTTT--------------------------------TT----TTCAGTAAATTACTTTTAAAGGACACACATGCTTGCTTTTATCCTTATTATTCTG
droEre2 scaffold_4784:23761172-23761378 - CCTTTGGTCG--------------------------------------------------------------------------------GACAAT---------------------------CACACAAATCAGAAATTTGGTGGGACGAACAAACAAACTCTCTGAGCTAGCCATTGCAATT-CGTAGAGAGCAGAACCAA-GAAAAACAGTTTGTTAG-------AGTAC----------------------------------------------------------------------------ATGAC------------------------------------------------------AATCCTAAGCTTAATCAACTTCTCATGTTTCAGTTTTGACAAAGTCTTTTTTAACATATCGGCTATAATATCGTTAGATGG----------------------TA---------------------------------------------------CA
droYak3 X:21165857-21166066 - TTCGAG-----TAGGCTTGGCAAAAAGTTGTTTG--------------------------------------------------------GAAAATCG--------------------------ATAGAAA--------------------------------------------------------------------------------------------TTTATACTTTATATGG-------TCGGAAACGCATCCTTCTGCCTGTTACAAACTTTTCAACGAATCTAGTATAACCTTTTACTCTACGAGTA-ACGGGTATAAAAAG-------------TTTATCACCAATAAATTTACTAAAATATTTAAATG--------------------------------------------------AAGT--------------------------------AT----TTTTTTAAATAATTTTTTAACAACA------------------------------
droEug1 scf7180000409850:71737-71925 + AACACAC-CTCG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATATTCTTTATAGGG-------TTTAAGCCGCTTCCTTCTACCTGTTACATACTTTTCAACGAATCTAATAT-CTCTTTTACTCTACGAGTA-ACGGTTATAAACAT---------------------------A--CGTTCCAAATATTAAAAG--------------------------------------------------GTCGTTGATT--------------------------CC----TTGAGTAAA-----ATCAAAAAGTAAATATCCTTGTGGTTGTTCCGTTTATTC--
droBia1 scf7180000301589:73438-73633 + TAGTGAACCTGAT--------------------------------------------------------------------------------------------------------------CAAGAATA--------------------------------------------------------------------------------------------TTTATACTTCATGGGG-------TCGGAAACGCTTCCTTCTAACTGATTCATTG------------------------CTTAGTCTACAAGTA-ACGGATATAGAAAT-------------AAAT---------GG--ATATGAAAAAATTATATCT----------------------------ATGGTGTTTTTTAACATATAACCTTCTACGCTGGGAAATAA----------------------------------CATTT----T------TTAATTGGTTTTGAATTTCGAATTAAA
droTak1 scf7180000414943:12870-13029 + GACG--------------------------------------------------------------------------------------------------------------------------------------------------AACACACAATATCTCTGAGCTAGTCGCGGCATTTACGTAGAGATCA--AACAGTCAAAAACAGTTCGTTACAATATATACTTTG--TGG-------TCGGAAACGTCTCCTT---------GCAAACTTTTAACTGAAA-------------TTATAATATCCCTGCAAGGGTATAAAAAGT------------GTCA---------AA--T--------------------------------------------------------------------------------------------------------------------------------------------------------------------
droEle1 scf7180000491278:885030-885134 + TA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TACTTTATATGG-------TCGGAAACGCTTCCCTTTGCATGCTTTTTCCCT----------------------TTTACTCTACGAGAA-ACGGGTATAATAAA----------------A---------AA--TTCGCCTTTCAAAAAACC--------------------------------------------------TCTT--------------------------------TT---------------------------------------------------------TT
droRho1 scf7180000779616:28034-28241 - TAGTGATCCTGAT--------------------------------------------------------------------------------------------------------------CAAGAAAA--------------------------------------------------------------------------------------------TATATACTTTATAGGG-------TCGGAAACGCTTTCTTCTACCTGTTACATACTTTTGCACGAATACAATATACCCTTTTACTCTACGAGTA-ACGGGTATAACAAGAGAGAACGCTATAGTCG---------AG--TGCCTCGACTATTAGATA--------------------------------------------------CCCGT-------------------------------TA----CTCAGCTAAACAACTT---AATATAAATATGCCTTCTTGTATGTTT---------
droFic1 scf7180000451479:4485-4562 + ACATTAATTTTGT-------------------------------------------------------------------------------------------------------------------------------------------------------CTGTT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTT--------------------------------TT----TTCAGTAAATTGCTTTTGAAGGACACTCATGCTTGCTTTTACCCCTACTACTCTG
droKik1 scf7180000300744:14092-14155 + ATTT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATC--------------------------------GT----TATAGTAAATTGCTATTAAAGGATACACATGCCTGTTTTTATCCATATTACTCAT
droAna3 scaffold_8979:8018-8209 + ACGT---------------------------------------------------------------------------------------------------------------------------------------------------ACCCTCAACCTCTGTGAGCTAGTCGCGGCAT-T-TGTTGCGAACAAAATATA-GCAAAACAGTTCGTTAC-------ACTTCTCTT-----------ACAACAGTTTCT-------CTTTACATACTT----------------------TTTACATCTCTTTCA-ACAGTA----------------------------------ACTTTTT--------------C--------------------------------------------------ATTACTGTCTCCTTCAACAGTGTCCTTTTCATTATTGTCTCTTTCAACAGTTTCCTT--------------------------------------TT
droBip1 scf7180000396043:30220-30366 + AAAC-------------------------------------------------------------------------------------------------------------------------------------------------------------TCTGTGAGCTAGCCGCGGAAAAT-TGTGGCGAGCGGAAGCAG-AAATAACAGTTCGTTAC-------T----GTATTATAAAAAATTCTGTAGGTTTTCTTTATTTTGCCCCATGCTT----------------------TCGACGCTATAGCTT-ACGAA--CAACTAA-------------GCGA---------AA--TAC----------------------------------------------------------------------------------------------------------------------------------------------------------------TA
dp5 Unknown_group_286:11032-11116 + TTTC-ATACTAAT--------------------------------------------------------------------------------------------------------------TAAC---------ATT------------------------TTTGTACC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T--------------------------------CT----TTCAGTAAACTGCTCCTAAAGGAAACACATGCATGCTTTTATCCATACTACTCGT
droPer2 scaffold_3:873683-873815 - CTCTTT-----AA----------------------------------TAATATTCATTTTATCTTA------------------------CGAATTTTAAAAATATTTATTTTTCATACTAATTAAC---------ATT------------------------TTTGTACC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T--------------------------------CT----TTCAGTAAACTGCTCCTAAAGGAAACACATGCATGCTTTTACCCATACTACTCGT
droVir3 scaffold_12736:499130-499211 - ATAT--TCATGTTAAAGTCGTTA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAA--------------------------------AT----TTCAGCAAATTGCTTTTAAAGGATGCTCACGCATGTTTCTATCCGTATTACTCTT
droMoj3 scaffold_6540:4171188-4171243 + TT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCAGCAAATTGCTTTTGAAGGACGCTCACGCATGCTTTTATCCGTATTACTCTT
droGri2 scaffold_15116:624526-624584 - TTTT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTCAGCAAATTGCTTTTGAAGGACGCTCACGCCTGTTTCTATCCATACTACTCTT

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
TTCA--CCCTGAAGAAGTGGTTAAAATCCGTTTGTCAAATACTCCAATAAAGGTATTCTAATCT----------------------------------------------------------------------------------GACGAACACACAAGCTCTTTGAGCTAGCCGCTGCAACT-AGTAGCGAGCAGAATCAA-GCAAAACAGTTTGTTA-------CACTTCGTATCG-------TCGGAAACGCTTTCTTCTGCCTGTTTCATACTT----------------------ATTATTCTATGACTA-ACGGGTATAATAAT-------------GTCA---------AA--TTCTACAATAATTGAATC--------------------------------------------------TTTT--------------------------------TT----TTCAGTAAATTACTTTTGAAGGACACACATGCTTGCTTTTATCCTTACTATTCTGSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTTTTGAAGGACACACA..........................1821.00200002000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTGAAGGACACACATGCTT.....................2120.50100000000001000000
.....................................................................................................................................................................TGAGCTAGCCGCTGC..........................................................................................................................................................................................................................................................................................................................................................15200.10200000000002000000
......................................................................................................................................................................................................................................................TCGGAAACGCTTTCTTCTGC....................................................................................................................................................................................................................................................................20200.05100000000001000000
......................................................................................................................................................................GAGCTAGCCGCTGCAAC.......................................................................................................................................................................................................................................................................................................................................................17200.05100000000001000000
droSec2
TTCA--CCCTGAAGAAGTGGTTAAAATCCGCTTGTCAAATACTCCAATAAAGGTATTCTAATCT--GAAACGCTGTCTTCTCCTTGGTCGGGCAAT---------------------------TACACAAATCATAAATTCCGTGAGACGAACACACAAGCTCTTTGAGCTAGCCGCTGCAACT--------AGCAGAATCAA-GCAAAACAGTTTGTTA-------CACTGTGTATCG-------TCGGAAACGCTTTCTTCTGCCCGTTTCATACTT----------------------ATTATTCTATGACTA-ACGGGTATAATAAA-------------GTCA---------AA--TTCTACAATAATTGAATC--------------------------------------------------TTTTT-------------------------------TT----TTCAGTAAATTACTTTTGAAGGACACACATGCTTGCTTTTATCCTTACTATTCTGSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
No Reads
dm3
TA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAATTTATAGTA-------TCGGAAACGCTTCCTTCTGCCTGTTACATACTT----------------------TTTACTCTACGACTA-ACGGGTATAATAAT-------------GTCA---------AA--TTCTACAATAATTAAATT--------------------------------------------------TTTT--------------------------------TT----TTCAGTAAATTACTTTTAAAGGACACACATGCTTGCTTTTATCCTTATTATTCTGSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAAATTACTTTTAAAGGAC...............................20118.00180000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007330500000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTAAATTACTTTTAAAGGAC...............................21112.00120000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004030500000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................TTTATAGTA-------TCGGAAACGCTTCCTTC.......................................................................................................................................................................................................................................................................2616.0060000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000010000010000000000000000000000000000000000000000000000000000000000000000001000000000100000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACTTTTAAAGGACACACATGCTTGC...................2615.0050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010201100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTACTTTTAAAGGACACACATGCTTGC...................2715.0050000000000000000000000000000000000000000000000000000000000000000000000000000000000004000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACTTTTAAAGGACACACATGCTTGCT..................2714.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAAAGGACACACATGCTTGCTT.................2212.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTTTAAAGGACACACATGCTTGCTTT................2712.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAAATTACTTTTAAAGGACACACATGCT......................2812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
..........................................................................................................................................................................................................................................TAGTA-------TCGGAAACGCTTCCTTCTGC....................................................................................................................................................................................................................................................................2512.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTTTTAAAGGACACACATGCTTGC...................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGCTTGCTTTTATCCTTATTATTC..2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGCTTGCTTTTATCCTTATTATTCT.2711.0010000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAAATTACTTTTAAAGGACACACATGCTT.....................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTAAAGGACACACATGCTTGCTTT................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................CTTCTGCCTGTTACATACTT----------------------TTTACT...........................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................TAGTA-------TCGGAAACGCTTCCTTCTGCC...................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................TATAATAAT-------------GTCA---------AA--TTCTACAATAAT.........................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACACATGCTTGCTTTTATCCTT.........2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAAAGGACACACATGCTTGCT..................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAAATTACTTTTAAAGGACACACATGC.......................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................TACATACTT----------------------TTTACTCTACGACTA-ACGGG............................................................................................................................................................................................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................TAGTA-------TCGGAAACGCTTCCTTCT......................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAAAGGACACACATGCTTG....................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
.............................................................................................................................................................................................................................................................................TTACATACTT----------------------TTTACTCTACGACTA-A................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................TAATTTATAGTA-------TCGGAAACGCT.............................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................TTACATACTT----------------------TTTACTCTACGACT...................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATTACTTTTAAAGGACACACATGCTT.....................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACTTTTAAAGGACACACATGCTT.....................2411.0010000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................TTACATACTT----------------------TTTACTCTACGAC....................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTACTTTTAAAGGACACACATGCT......................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAAATTACTTTTAAAGGACACACA..........................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................CTACGACTA-ACGGGTATAATAAT-------------GTC...................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTAAAGGACACACATGCTTGCTT.................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
..................................................................................................................................................................................................................................................................................................................................TATAATAAT-------------GTCA---------AA--TTCTACAATAATT........................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTAAAGGACACACATGCTTGCTT.................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
..................................................................................................................................................................................................................................................................................TACTT----------------------TTTACTCTACGACTA-ACGGG............................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................CTTCTGCCTGTTACATACTT----------------------TTTACTC..........................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................TCTGCCTGTTACATACTT----------------------TTTACTC..........................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................TCCTTCTGCCTGTTACATACT........................................................................................................................................................................................................................................................21200.851700000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000120000130000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
....................................................................................................................................................................................................................................................................TTCTGCCTGTTACATACTT----------------------TT...............................................................................................................................................................................................................................21200.50100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000030002014000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................CTTCTGCCTGTTACATACTT----------------------T................................................................................................................................................................................................................................21200.3570000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000304000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................TA-------TCGGAAACGCTTCCTTCTGCC...................................................................................................................................................................................................................................................................2330.3310000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................A---------AA--TTCTACAATAATTAC......................................................................................................................................................1840.2510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................GCTTCCTTCTGCCTGTTACATACTT----------------------T................................................................................................................................................................................................................................26200.2550000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000300200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................TTCCTTCTGCCTGTTACATACTT----------------------TTT..............................................................................................................................................................................................................................26130.1520000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000110000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................AAACGCTTCCTTCTGCCTGTT...............................................................................................................................................................................................................................................................21200.1530000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000030000000000000000000000000000
...........................................................................................................................................................................................................................................................AACGCTTCCTTCTGCCTGTTACATACT........................................................................................................................................................................................................................................................27200.1530000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................TTCCTTCTGCCTGTTACATAC.........................................................................................................................................................................................................................................................21200.1530000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................GCTTCCTTCTGCCTGTTACATACT........................................................................................................................................................................................................................................................24200.1530000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................CTTCTGCCTGTTACATACT........................................................................................................................................................................................................................................................19200.1530000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................A-------TCGGAAACGCTTCCTTCTGCCTG.................................................................................................................................................................................................................................................................2480.1310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................A-------TCGGAAACGCTTCCTTCTGC....................................................................................................................................................................................................................................................................2180.1310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................AACGCTTCCTTCTGCCTGTTA..............................................................................................................................................................................................................................................................21200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................TTCCTTCTGCCTGTTACATACTT----------------------TT...............................................................................................................................................................................................................................25200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................AACGCTTCCTTCTGCCTGTTACA............................................................................................................................................................................................................................................................23200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................CGCTTCCTTCTGCCTGTTACA............................................................................................................................................................................................................................................................21200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
................................................................................................................................................................................................................................................................TTCCTTCTGCCTGTTACATACTT----------------------T................................................................................................................................................................................................................................24200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................TCCTTCTGCCTGTTACATACTT----------------------TTT..............................................................................................................................................................................................................................25130.0810000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................TCCTTCTGCCTGTTACATACTT----------------------T................................................................................................................................................................................................................................23200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................TCGGAAACGCTTCCTTCTGC....................................................................................................................................................................................................................................................................20200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................GCTTCCTTCTGCCTGTTACATACTT----------------------TT...............................................................................................................................................................................................................................27200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................AACGCTTCCTTCTGCCTG.................................................................................................................................................................................................................................................................18200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................CTTCTGCCTGTTACATA..........................................................................................................................................................................................................................................................17200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................AAACGCTTCCTTCTGCCTGTTACA............................................................................................................................................................................................................................................................24200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................AAACGCTTCCTTCTGCCTGTTAC.............................................................................................................................................................................................................................................................23200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................GGAAACGCTTCCTTCTGCCTG.................................................................................................................................................................................................................................................................21200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................TCGGAAACGCTTCCTTCTGCCTGTTACA............................................................................................................................................................................................................................................................28200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................CGGAAACGCTTCCTTCTGCCT..................................................................................................................................................................................................................................................................21200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
.................................................................................................................................................................................................................................................................TCCTTCTGCCTGTTACATACTT----------------------.................................................................................................................................................................................................................................22200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................CTTCCTTCTGCCTGTTACATAC.........................................................................................................................................................................................................................................................22200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................ATAATTAAATT--------------------------------------------------TTTT--------------------------------TT----TT.....................................................19200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................AACGCTTCCTTCTGCCTGTTACATACTT----------------------.................................................................................................................................................................................................................................28200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................CCTTCTGCCTGTTACATACT........................................................................................................................................................................................................................................................20200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................AACGCTTCCTTCTGCCTGTTACATA..........................................................................................................................................................................................................................................................25200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................TTCCTTCTGCCTGTTACATA..........................................................................................................................................................................................................................................................20200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................GGAAACGCTTCCTTCTGCCTGTTACATA..........................................................................................................................................................................................................................................................28200.0510000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................GCTTCCTTCTGCCTGTTAC.............................................................................................................................................................................................................................................................19200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................AATAATTAAATT--------------------------------------------------TTTT--------------------------------TT----TT.....................................................20200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................GCTTCCTTCTGCCTGTTACA............................................................................................................................................................................................................................................................20200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................CGCTTCCTTCTGCCTGTTACATACTT----------------------.................................................................................................................................................................................................................................26200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................GAAACGCTTCCTTCTGCCTGT................................................................................................................................................................................................................................................................21200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droEre2
CCTTTGGTCG--------------------------------------------------------------------------------GACAAT---------------------------CACACAAATCAGAAATTTGGTGGGACGAACAAACAAACTCTCTGAGCTAGCCATTGCAATT-CGTAGAGAGCAGAACCAA-GAAAAACAGTTTGTTAG-------AGTAC----------------------------------------------------------------------------ATGAC------------------------------------------------------AATCCTAAGCTTAATCAACTTCTCATGTTTCAGTTTTGACAAAGTCTTTTTTAACATATCGGCTATAATATCGTTAGATGG----------------------TA---------------------------------------------------CASizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
............................................................................................................................ACACAAATCAGAAATTTGGTGGG...........................................................................................................................................................................................................................................................................................................................................................................................2311.0011000000
............................................................................................................................................................................GCCATTGCAATT-CGTAGAGAG............................................................................................................................................................................................................................................................................................................................................2111.0011000000
...........................................................................................................................................................................AGCCATTGCAATT-CGTAGAGAG............................................................................................................................................................................................................................................................................................................................................2211.0010000100
............................................................................................................................................................................................................GAAAAACAGTTTGTTAG-------AG........................................................................................................................................................................................................................................................................................................1911.0011000000
..................................................................................................................................................................CTCTGAGCTAGCCATTGCAATT-CGTA.................................................................................................................................................................................................................................................................................................................................................2620.5011000000
..................................................................................................................................................................................GCAATT-CGTAGAGAGCAGAAC......................................................................................................................................................................................................................................................................................................................................2120.5011000000
.......................................................................................................................................................ACAAACAAACTCTCTGAGCT...................................................................................................................................................................................................................................................................................................................................................................20200.0511000000
............................................................................................................................................TGGTGGGACGAACAAACAAACTCTCTG.......................................................................................................................................................................................................................................................................................................................................................................27200.0511000000
droYak3
TTCGAG-----TAGGCTTGGCAAAAAGTTGTTTG--------------------------------------------------------GAAAATCG--------------------------ATAGAAA--------------------------------------------------------------------------------------------TTTATACTTTATATGG-------TCGGAAACGCATCCTTCTGCCTGTTACAAACTTTTCAACGAATCTAGTATAACCTTTTACTCTACGAGTA-ACGGGTATAAAAAG-------------TTTATCACCAATAAATTTACTAAAATATTTAAATG--------------------------------------------------AAGT--------------------------------AT----TTTTTTAAATAATTTTTTAACAACA------------------------------SizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
.................................................................................................................................................................................................................................................................TCCTTCTGCCTGTTACAAACTTTTC....................................................................................................................................................................................................................................................2540.25101000000000
.....................................................................................................................................................................................................................................................................TCTGCCTGTTACAAACTTTTCAACGA...............................................................................................................................................................................................................................................2650.20100000000001
droEug1
AACACAC-CTCG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATATTCTTTATAGGG-------TTTAAGCCGCTTCCTTCTACCTGTTACATACTTTTCAACGAATCTAATAT-CTCTTTTACTCTACGAGTA-ACGGTTATAAACAT---------------------------A--CGTTCCAAATATTAAAAG--------------------------------------------------GTCGTTGATT--------------------------CC----TTGAGTAAA-----ATCAAAAAGTAAATATCCTTGTGGTTGTTCCGTTTATTC--SizeHit CountTotal NormTotal
No Reads
droBia1
TAGTGAACCTGAT--------------------------------------------------------------------------------------------------------------CAAGAATA--------------------------------------------------------------------------------------------TTTATACTTCATGGGG-------TCGGAAACGCTTCCTTCTAACTGATTCATTG------------------------CTTAGTCTACAAGTA-ACGGATATAGAAAT-------------AAAT---------GG--ATATGAAAAAATTATATCT----------------------------ATGGTGTTTTTTAACATATAACCTTCTACGCTGGGAAATAA----------------------------------CATTT----T------TTAATTGGTTTTGAATTTCGAATTAAASizeHit CountTotal NormTotal
No Reads
droTak1
GACG--------------------------------------------------------------------------------------------------------------------------------------------------AACACACAATATCTCTGAGCTAGTCGCGGCATTTACGTAGAGATCA--AACAGTCAAAAACAGTTCGTTACAATATATACTTTG--TGG-------TCGGAAACGTCTCCTT---------GCAAACTTTTAACTGAAA-------------TTATAATATCCCTGCAAGGGTATAAAAAGT------------GTCA---------AA--T--------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droEle1
TA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TACTTTATATGG-------TCGGAAACGCTTCCCTTTGCATGCTTTTTCCCT----------------------TTTACTCTACGAGAA-ACGGGTATAATAAA----------------A---------AA--TTCGCCTTTCAAAAAACC--------------------------------------------------TCTT--------------------------------TT---------------------------------------------------------TTSizeHit CountTotal NormTotal
No Reads
droRho1
TAGTGATCCTGAT--------------------------------------------------------------------------------------------------------------CAAGAAAA--------------------------------------------------------------------------------------------TATATACTTTATAGGG-------TCGGAAACGCTTTCTTCTACCTGTTACATACTTTTGCACGAATACAATATACCCTTTTACTCTACGAGTA-ACGGGTATAACAAGAGAGAACGCTATAGTCG---------AG--TGCCTCGACTATTAGATA--------------------------------------------------CCCGT-------------------------------TA----CTCAGCTAAACAACTT---AATATAAATATGCCTTCTTGTATGTTT---------SizeHit CountTotal NormTotal
No Reads
droFic1
ACATTAATTTTGT-------------------------------------------------------------------------------------------------------------------------------------------------------CTGTT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTT--------------------------------TT----TTCAGTAAATTGCTTTTGAAGGACACTCATGCTTGCTTTTACCCCTACTACTCTGSizeHit CountTotal NormTotal
No Reads
droKik1
ATTT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATC--------------------------------GT----TATAGTAAATTGCTATTAAAGGATACACATGCCTGTTTTTATCCATATTACTCATSizeHit CountTotal NormTotal
No Reads
droAna3
ACGT---------------------------------------------------------------------------------------------------------------------------------------------------ACCCTCAACCTCTGTGAGCTAGTCGCGGCAT-T-TGTTGCGAACAAAATATA-GCAAAACAGTTCGTTAC-------ACTTCTCTT-----------ACAACAGTTTCT-------CTTTACATACTT----------------------TTTACATCTCTTTCA-ACAGTA----------------------------------ACTTTTT--------------C--------------------------------------------------ATTACTGTCTCCTTCAACAGTGTCCTTTTCATTATTGTCTCTTTCAACAGTTTCCTT--------------------------------------TTSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
.......................................................................................................................................................................................................TATA-GCAAAACAGTTCGTTAC-------ACTC......................................................................................................................................................................................................................................................................................................2570.141010000
.............................................................................................................................................................AACCTCTGTGAGCTAGTCGCGGCAT-T-.....................................................................................................................................................................................................................................................................................................................................................26200.102020000
....................................................................................................................................................................GTGAGCTAGTCGCGGCAT-T-TGTTGC...............................................................................................................................................................................................................................................................................................................................................25200.102110000
..............................................................................................................................................................ACCTCTGTGAGCTAGTCGCGGC..........................................................................................................................................................................................................................................................................................................................................................22200.102200000
.................................................................................................................................................................................................ACAAAATATA-GCAAAACAGTTCGT....................................................................................................................................................................................................................................................................................................................24120.081100000
.................................................................................................................................................................................................ACAAAATATA-GCAAAACAGTTCGTT...................................................................................................................................................................................................................................................................................................................25120.081100000
................................................................................................................................................................................................AACAAAATATA-GCAAAACAGTTCGT....................................................................................................................................................................................................................................................................................................................25120.081010000
...............................................................................................................................................................CCTCTGTGAGCTAGTCGCGGC..........................................................................................................................................................................................................................................................................................................................................................21200.051100000
......................................................................................................................................................................................................ATATA-GCAAAACAGTTCGTTAC-------..........................................................................................................................................................................................................................................................................................................22200.051010000
.............................................................................................................................................................AACCTCTGTGAGCTAGTCGCGGC..........................................................................................................................................................................................................................................................................................................................................................23200.051001000
.............................................................................................................................................................AACCTCTGTGAGCTAGTCGCGG...........................................................................................................................................................................................................................................................................................................................................................22200.051000100
............................................................................................................................................................CAACCTCTGTGAGCTAGTCGCGGCAT-T-T....................................................................................................................................................................................................................................................................................................................................................28200.051100000
.................................................................................................................................................................TCTGTGAGCTAGTCGCGGCA.........................................................................................................................................................................................................................................................................................................................................................20200.051100000
.....................................................................................................................................................................TGAGCTAGTCGCGGCAT-T-TGT..................................................................................................................................................................................................................................................................................................................................................21200.051001000
.............................................................................................................................................................AACCTCTGTGAGCTAGTCG..............................................................................................................................................................................................................................................................................................................................................................19200.051100000
...........................................................................................................................................................TCAACCTCTGTGAGCTAGTCGCGGCAT-T-.....................................................................................................................................................................................................................................................................................................................................................28200.051010000
..........................................................................................................................................................CTCAACCTCTGTGAGCTAGTCGCGGC..........................................................................................................................................................................................................................................................................................................................................................26200.051100000
...........................................................................................................................................................TCAACCTCTGTGAGCTAGTCGCG............................................................................................................................................................................................................................................................................................................................................................23200.051100000
............................................................................................................................................................CAACCTCTGTGAGCTAGTCGCGG...........................................................................................................................................................................................................................................................................................................................................................23200.051100000
.....................................................................................................................................................................................................AATATA-GCAAAACAGTTCGTTAC-------..........................................................................................................................................................................................................................................................................................................23200.051010000
..................................................................................................................................................................................................CAAAATATA-GCAAAACAGTTCGTTAC-------..........................................................................................................................................................................................................................................................................................................26200.051010000
............................................................................................................................................................CAACCTCTGTGAGCTAGTC...............................................................................................................................................................................................................................................................................................................................................................19200.051100000
.......................................................................................................................................................................................................TATA-GCAAAACAGTTCGTTAC-------A.........................................................................................................................................................................................................................................................................................................22200.051001000
...T---------------------------------------------------------------------------------------------------------------------------------------------------ACCCTCAACCTCTGTGAGCTAGTCGCG............................................................................................................................................................................................................................................................................................................................................................28200.051100000
.........................................................................................................................................................CCTCAACCTCTGTGAGCTAGTCGCGGC..........................................................................................................................................................................................................................................................................................................................................................27200.051100000
....................................................................................................................................................................................................AAATATA-GCAAAACAGTTCGTTAC-------..........................................................................................................................................................................................................................................................................................................24200.051010000
.........................................................................................................................................................CCTCAACCTCTGTGAGCTAGTC...............................................................................................................................................................................................................................................................................................................................................................22200.051010000
..................................................................................................................................................................CTGTGAGCTAGTCGCGGCAT-T-TG...................................................................................................................................................................................................................................................................................................................................................23200.051100000
droBip1
AAAC-------------------------------------------------------------------------------------------------------------------------------------------------------------TCTGTGAGCTAGCCGCGGAAAAT-TGTGGCGAGCGGAAGCAG-AAATAACAGTTCGTTAC-------T----GTATTATAAAAAATTCTGTAGGTTTTCTTTATTTTGCCCCATGCTT----------------------TCGACGCTATAGCTT-ACGAA--CAACTAA-------------GCGA---------AA--TAC----------------------------------------------------------------------------------------------------------------------------------------------------------------TASizeHit CountTotal NormTotal
No Reads
dp5
TTTC-ATACTAAT--------------------------------------------------------------------------------------------------------------TAAC---------ATT------------------------TTTGTACC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T--------------------------------CT----TTCAGTAAACTGCTCCTAAAGGAAACACATGCATGCTTTTATCCATACTACTCGTSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTTTATCCATACTACTCGT2111.0010100000000
droPer2
CTCTTT-----AA----------------------------------TAATATTCATTTTATCTTA------------------------CGAATTTTAAAAATATTTATTTTTCATACTAATTAAC---------ATT------------------------TTTGTACC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T--------------------------------CT----TTCAGTAAACTGCTCCTAAAGGAAACACATGCATGCTTTTACCCATACTACTCGTSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
No Reads
droVir3
ATAT--TCATGTTAAAGTCGTTA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAA--------------------------------AT----TTCAGCAAATTGCTTTTAAAGGATGCTCACGCATGTTTCTATCCGTATTACTCTTSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
No Reads
droMoj3
TT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCAGCAAATTGCTTTTGAAGGACGCTCACGCATGCTTTTATCCGTATTACTCTTSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
No Reads
droGri2
TTTT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTCAGCAAATTGCTTTTGAAGGACGCTCACGCCTGTTTCTATCCATACTACTCTTSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads

Generated: 05/19/2015 at 12:32 AM