ID:

dsi_4619

 Coordinate:

3r:19415845-19416111 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-10.2 -10.0 -9.7 -9.6

Flybase annnotation

Antisense to intron [3r_19416011_19416694_+]; Antisense to five_prime_UTR [3r_19415818_19416010_+]; Antisense to exon [3r_19415818_19416010_+]; five_prime_UTR [3r_19415667_19416043_-]; exon [3r_19415552_19416043_-]

No Repeatable elements found

Sense Strand Reads

----------------------------------------------------------------------------------------------------------------------#########################################################################################################################################################################################################################################################
GTCTTATAGCCCGTTCGCTAACTAAAAACTATTATTTTTAAAAATTGTATGTAGGTTCTTGCTCTTTTCTACTATGAAATGTTTTCTATAGCTAAAATAGCTAGTTTGGCAGCACTGGCGACGGCACTCCGTCTAATGTTCTGTCGCTTACCAAAACAAACCAAAAGCCAAACCCCTCGAGTTCTCTCTTATCAGCGAGAATTGTGGTCAAGGCCTGCAGCTCCGCGGCACGCTTAAGCCTCTCCGGTGGACACAATTAGGCAATGTTTTTGTTTAAAACTGGTTTTTTGTTATTTCTTTCTTTTTTACTGTCCCAGGTTGTTGTTGGTTGACAATTTACTGTCCGATTAACTGCGCCATTTTTCCA
***************************************************************************************************************************...((.........((((..(((((..........(((...................)))..........))))))))).........))********************************************************************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR902009
testis
 M023
head
 M024
male body		 SRR553487
NRT_0-2 hours eggs
 M025
embryo
 M053
female body
 SRR618934
dsim w501 ovaries
 SRR553486
Makindu_3 day-old ovaries
 O001
Testis
 O002
Head
 SRR1275487
Male larvae
................................................................................................................................................................................................................................................................................................................................................TTCCCGTCCGATCAACTGC............ 19 3 15 3.67 55 0 30 25 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................................................................................................................................................TTTCCCGTCCGATCAACTGC............ 20 3 6 2.33 14 0 5 9 0 0 0 0 0 0 0 0
.........................................................................................................TTGGCAGTACTGGCGACGGC.................................................................................................................................................................................................................................................. 20 1 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................................................CACGCTTAAGCCTCTCCGGCGT..................................................................................................................... 22 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
...............................................................................TGTTTTCTAGAGCTAATACAGC.......................................................................................................................................................................................................................................................................... 22 3 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0
...........................................................................................................................GCACTCCGTCTAATGTTCTGT............................................................................................................................................................................................................................... 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................................................................................................................................TACTGTCCGATTAACTGCG........... 19 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
.............................................................................................................................ACTCCGTCTAATGTTCTGT............................................................................................................................................................................................................................... 19 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0
..................................................................................................................................................................................................GCGAGAATTGTGGTCAAGG.......................................................................................................................................................... 19 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................TATCAGCGAGAATTGTGGTCGAGGCC........................................................................................................................................................ 26 1 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0
...........................................................................................CTAAAATAGCTAGGTTGGCAG............................................................................................................................................................................................................................................................... 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................................................................................................................................................TTCCCGTCCGATCAACTG............. 18 3 20 0.80 16 0 3 7 2 1 0 0 0 1 1 1
...............................................................................................................................................................................GTCGAGTTCTCTCTTAAC.............................................................................................................................................................................. 18 2 2 0.50 1 0 0 0 0 0 0 1 0 0 0 0
...............................................................................................................................................................................................................................................................................................................................................TTTCCCGTCCGATCAACTG............. 19 3 20 0.15 3 0 0 1 0 0 1 0 0 1 0 0
.......................................................................................................................................ATGTTCTGTCGCTTCGCGAA.................................................................................................................................................................................................................... 20 3 8 0.13 1 0 0 0 0 0 0 0 1 0 0 0
................................................ATGTAGGTTTTTGCT................................................................................................................................................................................................................................................................................................................ 15 1 20 0.05 1 0 0 0 0 0 0 1 0 0 0 0
..............................................................................................................................................................................................................................................................................................................................................GTTTCCTGTCCGATCAACT.............. 19 3 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0

Anti-sense strand reads

-------------------------------------------------------------------------------------------------------------------------------------------------------#################################################################################################################################################################################################-----------------------
CAGAATATCGGGCAAGCGATTGATTTTTGATAATAAAAATTTTTAACATACATCCAAGAACGAGAAAAGATGATACTTTACAAAAGATATCGATTTTATCGATCAAACCGTCGTGACCGCTGCCGTGAGGCAGATTACAAGACAGCGAATGGTTTTGTTTGGTTTTCGGTTTGGGGAGCTCAAGAGAGAATAGTCGCTCTTAACACCAGTTCCGGACGTCGAGGCGCCGTGCGAATTCGGAGAGGCCACCTGTGTTAATCCGTTACAAAAACAAATTTTGACCAAAAAACAATAAAGAAAGAAAAAATGACAGGGTCCAACAACAACCAACTGTTAAATGACAGGCTAATTGACGCGGTAAAAAGGT
**********************************************************************************************************************************************************...((.........((((..(((((..........(((...................)))..........))))))))).........))*************************************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR902009
testis
 M023
head
 SRR618934
dsim w501 ovaries
 SRR553487
NRT_0-2 hours eggs
 O001
Testis
 M024
male body		 M053
female body
 SRR553485
Chicharo_3 day-old ovaries
 SRR553486
Makindu_3 day-old ovaries
 M025
embryo
 GSM343915
embryo
 SRR553488
RT_0-2 hours eggs
..................................................................................AAAGATGTCGATCTTAT............................................................................................................................................................................................................................................................................ 17 2 20 2.45 49 0 0 16 25 0 0 0 2 4 0 0 2
.....................................................CCAAGAACGAGAAAAGATGA...................................................................................................................................................................................................................................................................................................... 20 0 1 2.00 2 0 2 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................................................GGCCGCCTGTGTTAATCCGTT....................................................................................................... 21 1 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................TGAGGCAGATTACAAGACAGC............................................................................................................................................................................................................................. 21 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................TTTGGGGAGCTCAAGAGAGAATAGT............................................................................................................................................................................. 25 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0
.....................................................................................................................................................................................................TCTTAACACCAGTTCCGG........................................................................................................................................................ 18 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0
....................................................................................................................................................................................................................CGGACGTCGAGGCGCCGTGCGAAT................................................................................................................................... 24 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................................................................................................................GAAAGAAAAAATGACAGGGTCCAA............................................... 24 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 1 0
.......................................................................................................................................TACAAGACAGCGAATGATTT.................................................................................................................................................................................................................... 20 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................CGGTTTGGGGAGCTCGAGAGA.................................................................................................................................................................................... 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................................................................................................................................CAACTGTTAAATGACAGGCTAA.................. 22 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0
............................................................................................................................................................................................................................................................TGTTAATCCGTTACAAAAACAAATTTTGA...................................................................................... 29 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0
...........................................................................................................................................................................TGGGGAGCTCAAGAGAGAAT................................................................................................................................................................................ 20 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0
........................................................................................................................................................................................................................AGTCGAGGCGCCGTGCGAATTC................................................................................................................................. 22 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................TTAACACCAGTTCCGGACGTCGAGGCG............................................................................................................................................. 27 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0
..............................................................................................................................GAGGCAGGTTACAAGGCAGCT............................................................................................................................................................................................................................ 21 3 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................................................TCGGAGAGGCCGCCTGTGTTA.............................................................................................................. 21 1 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0
............................................................................................................................GTGAGGCAGATTACAAGA................................................................................................................................................................................................................................. 18 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................TTAACACCAGTTCCGGACGTC................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................TACAAGACAGCGAATGGTTT.................................................................................................................................................................................................................... 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................................................................................................................GTCCAACAACAACCAACT................................... 18 0 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0
....................................................................................................................................................................TTCGGTTTGGGGAGCTCAAGAG..................................................................................................................................................................................... 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................GTCGTGACCGCTGCCGTGAGGCAG.......................................................................................................................................................................................................................................... 24 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................................................................................................................................................................ACAGGCTAATTGACG............ 15 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0
.............................................................................................................................................................TTTGGTTTTCGGTTTGGGGAG............................................................................................................................................................................................. 21 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0
..............................................................................................................................GAGGCAGGTTACAAGGCAGCG............................................................................................................................................................................................................................ 21 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................TAGTCGCTCTTAACACCAGTT............................................................................................................................................................ 21 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0
..............................................................................................................................................................................................................CAGTTCCGGACGTCGAGGCGC............................................................................................................................................ 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................CAGAGGCGCCGTGCGGATTC................................................................................................................................. 20 3 2 0.50 1 0 1 0 0 0 0 0 0 0 0 0 0
.................................................................................AAAAGATATCGATCTTA............................................................................................................................................................................................................................................................................. 17 1 2 0.50 1 0 0 1 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................................................................................AAAAAAAATTGAGACCAAAAAACAA........................................................................... 25 3 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0
....................................................ACCAAGAACGAGACAAGAAGAT..................................................................................................................................................................................................................................................................................................... 22 3 2 0.50 1 0 0 0 1 0 0 0 0 0 0 0 0
.................................................................................AAAAGATGTCGATCTTATGG.......................................................................................................................................................................................................................................................................... 20 3 10 0.40 4 0 0 1 1 0 0 0 0 0 0 0 2
.................................................................................AAAAGATGTCGATCTTAT............................................................................................................................................................................................................................................................................ 18 2 10 0.40 4 0 0 1 2 0 0 0 0 0 0 0 1
...........................................................ACGAGAAAAGGTGATA.................................................................................................................................................................................................................................................................................................... 16 1 4 0.25 1 0 0 1 0 0 0 0 0 0 0 0 0
..................................................................................AAAGATATCGATCTTA............................................................................................................................................................................................................................................................................. 16 1 4 0.25 1 0 0 1 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................................................................ACCACCTGCGTTAATCCG......................................................................................................... 18 2 5 0.20 1 0 0 0 0 0 0 0 1 0 0 0 0
.....................................................CCAAGAATGGGAAAAGAT........................................................................................................................................................................................................................................................................................................ 18 2 7 0.14 1 0 0 1 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................CGAGAGGGAATAGTCTCTC........................................................................................................................................................................ 19 3 11 0.09 1 0 0 1 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................................................................ACCACCTGCGTTAATCCGA........................................................................................................ 19 3 14 0.07 1 0 0 0 0 0 0 0 0 0 0 0 1
..........................................................................................................................TCGTGAGGCAGATTA...................................................................................................................................................................................................................................... 15 1 16 0.06 1 0 0 0 0 0 0 0 0 1 0 0 0
....................................................................................AGATGTCGATTTTAT............................................................................................................................................................................................................................................................................ 15 1 19 0.05 1 0 0 0 0 0 0 0 0 0 0 0 1
.......................................................AAGAACGAGACAGGATG....................................................................................................................................................................................................................................................................................................... 17 2 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 3r:19415795-19416161 - dsi_4619 GTCTTATAGCCCGTTCGCTAACTA-AA---------A---------------------------------A------------------------------------------------------------------------------------------------------------------------------------------------------------------CTATTAT-----TTTT----------------------------------------------------------AAAAATTGTATGTAGGTTCTTGCTCTTTTCTACTATGAAATGTTTTCTATAGCTAA-----------------------------AATAGCTA----GTTTGGCAGCACTGGCGACGGCACTCCGTCTAA---TG--------TTC-----------TGTCGCTTACCAAAACAAACCAAAAGCCAAACC---CCTCGAGTTCTC-------TCTTAT--------CAGC------GAGAATTGTGGTCAAGGCC--------------------------------------------TGCAGCTCCGCGGCACGCTT----------------AAGCCTCTCC--GGTGGA--CACAATTA-GGCAATGT-----TTTTGT-TTA-AAACTGGTTT----TTT-GTTATTT---------------CT---------------------------------------------------------------TTCTTT-TTTACTGT-CCCAGGTTGTTGTTGGTTGACAATTTACTGTCCGATTAACTGCGCCAT----------TTTTCCA
droSec2 scaffold_0:20218039-20218405 - GTCTTTTAGCCCGTTCGCTCACTA-AA---------A---------------------------------A------------------------------------------------------------------------------------------------------------------------------------------------------------------CTATTAT-----TTGT----------------------------------------------------------AAAAATTGTATGTAGGCTCTTGCTCTTTGCTACTATTAAATATTTTCTATAGCTAA-----------------------------AATAGCTA----GGTTGGCAGTACTGGCGACGGCACTCCGTCTAA---TG--------TTC-----------TGTCGCTTACCAAAACAAACCAAAAGCCAAACC---CCTCGAGTTCTC-------TCTTAT--------CAGC------GAGAATTGTGGTCAAGGCC--------------------------------------------TGCAGCTCTGCGGCACGCTT----------------AAGCCTCTCC--GGCGGA--CACAATTA-GGCAATGT-----TTTTGT-TTA-AAACTGGTTT----TTT-GTTATTT---------------CT---------------------------------------------------------------TTCTTT-TTTACTGT-CCCAGGTTGTTGTTGGTTGACAATTTACTGTCCGATTAACTGCGCCAT----------TTTTCCA
dm3 chr3R:19876488-19876849 - CTCTTTTAGTCCGTTCGCTAACTA-TA---------A---------------------------------A------------------------------------------------------------------------------------------------------------------------------------------------------------------CTATTAT-----TTAT----------------------------------------------------------AAAAATTGTATTTGGGTTCTACCTCTTTGCTACTATGAAATATTTGCTATAGCTA-----------------------------AA----ATA----GGTTGGCAGCACTGGCGACGGCACTCCGTCTAA---TG--------TTC-----------TGTCGCTTACCAAAACAAACCAAAAGCCA-ACC---CCTTGAGTTCTC-------TCTTAT--------CAGC------GGGAATTGTGGTCAAGGCC--------------------------------------------TGCAGCTTCGCGGCACGCTT----------------AAGCATCTCC--GGCGGA--CACAATTA-GGCAATGT-----TATTGT-TTA-AAACTGGTTT----TCT-GTTATTT---------------CT---------------------------------------------------------------CTCTTT-TTTACTGT-CTCAGGTTGTTGTTGGTTGACGATTTACTGTCCGATTAACTGCGCCAT----------TTTTCCA
droEre2 scaffold_4820:8180199-8180603 + CTGTTTTGGTACGTTCTTCAA-----A----CCATTA--A-TCTTCTCAAATTAGCTTGCCTAGATTAGCA------------------------------------------------------------------------------------------------------------------------------------------------------------------CTATTAT-----TTATATAATTTATACTTTTAGATCTTGTTACTAGCGAATATTTGGTAAGATCAGCACTTAAA-------------------------------------------------------A-----------------------------AATAGCTAGGCTGGCTAGCAGCACTGGCGACGACACTTCGTCTAA---TG--------TTC-----------T-TTGCTTACCAAAACAAACCAAACGCCAAACC---TCTCGAGTTCTC-------TCTTAT--------CAGC------GGAAATTTTGGTCAAGGCC--------------------------------------------TGCAGCTCCGCGGCACGCTT----------------GAGCCTCTTC--GGCGGA--CACTATTA-GGCAATGT-----TTTTGT-TTA-AAACTGGTTT----TTT-GTTATTT----T----------TT---------------------------------------------------------------TTCTTT-TTTACTGT-CCTAGGTTGTTGTTGGTTGACAATTTACTGTCCGATTAACTGCGCCAT----------TTTTCCA
droYak3 3R:26624739-26625029 + CTCTTA----------GCAACCTA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AA-------------------------------------------------------A-----------------------------AATAGCTA----GGCTGGCAGCACTGGCGACGGCACTTCGTCTAA---TG--------TTC-----------TTTCGCTTACCAAAACAAACCAATAGCCAAACC---CCTCGAGTTCTC-------TCTTAT--------CAGC------GGGAATTGTGGTCAAGGCC--------------------------------------------TACAGCTCCGCGGCACGCTT----------------AAGCTTCTCC--GGCGGA--CACAATTA-GGCAATGT-----TTTTGT-TTA-AAACTGGATT----TTT-GTTATTT----TT---------TT---------------------------------------------------------------TTCTTT-TTTACTGT-CCTAGGTTGTTGTTGGTTGACAATTTACTGTCCGATTAACTGCGCCAT----------TTTTCCA
droEug1 scf7180000409798:515786-516054 + -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A----GCTA----ATTTAGCAGCACTGGAGACGGCACTGCGTCTAAA--TG--------TTC-----------TGTTGCTCACCAAAACAAACTAAAAGCGAAACCACCGCTTGCGGTCTC-------TCTTAT--------CAGC------AGGAATAGTGGTCAAGGCC--------------------------------------------TGCGTCTCCGCAGCACACTC----------------AAGCCACTTC--GGTGGA--CACAATTG-AGAAATGT-----TTTTGT-TTA-AAACTGGTTT----TTC-CTTATTT---------------CA---------------------------------------------------------------TTCTT--TTTATTGT-CCC-GCTTGTTGTTGGTTGACAATATTCTGTCCGATTAACTGCGCCAT----------T--TTCA
droBia1 scf7180000302136:222018-222409 - TTTTTAAACCCCTTTTGTTA-C-------------AA--GTTTTTCTCATATTA------------------TAGTATTTTTTTACAGTTTTTTTT----------------------------TGTT---------------------------------------------------------------AGCCTAACAT-G------------------------AAAAAAAAAGTTTTTGTC------------------------------------------------------TACTTAAA-------------------------------------------------------AAATAGCCACATTTGGCTATT---TTCTTA----GCTA----GCCTGGCAGCTCTGACGACGGCGCTGCGTCTAA---CG--------TTC-----------TGTTGCTTACCAAAACAAACTAAAAACGAAACC---GCTCGAGTTCTC-------TCTTAT--------CGCCAAGAATTGGAATGGTGGTCAAGGCC--------------------------------------------TGCGGCTCCGCGGCACGCTC----------------CGGC----------CGGA--CACAATTG-GGCAATGT-----TTTTGT-TTA-AAACAGGTTT----TTTCG-CTTTT---------------TT---------------------------------------------------------------CTCTTTTTTAATTGC-CC-----TGTTGTTGACTGACAATTTACTGTCCGATTAACTGCGCCAT----------TTTTCGA
droTak1 scf7180000414373:175598-176043 + ATTTTGTAGTATCTGAACTGGATA-AA---------A---------------------------------ATTAGTATTT-TTGGAAGATTTTTTAAAATGGCCTTTTACATGGAATTCTTTTTAGCTTTAATAAATGTATAATTGCACTGCGAATTTCTCAACTAACTAATTATGTCATTAAATTAATACAGCTTAACA---------------------------------------------------------------------------------------------------------AA-------------------------------------------------------ATACAGCTAAATCTAGCTAATAA-TTCCTA----GCTA----GCTCGGCAGCACTGGCGACGGCACTGCGTCTAA---TG--------TTC-----------TGTTGCTCACCAAAACAAACGAAAAGCGAAACC---------GTTCTC-------TCTTATCGGCTCCGCGGG---AACGGGAATAGTGGTCAAGGCC--------------------------------------------TGCGGCTCCGCGGCACGCTT----------------AAGCCTCTTC--GGCGGA--CACAATTG-GGCAATGT-----TTTTGT-TTA-AAACTGGTTT----TTTCGCCAATT---------------TA--------------------------------------------------------------TT--TTT-TTTA-TGCCCCC-GCTCGT-GTTG-----------ACTGTCCGATTAACTGCGCCAT----------T-TTCGA
droEle1 scf7180000491008:178362-178749 - CTCTATTAGGCTTTTGGGTCCCCGCAACACT-----CTT-------------------------------------------------------------------------------------AA---------------------------------------------------------------ACACCTTAAAATTATTTGGACGTCCTTAATTTCCAATTAATAAAAACGTAT------------------------------------------------------------T--T-AA-------------------------------------------------------AAAAAGCTAGATCTGGCATT-AATCGTCAA----GCCA----GTTTGGCAGCACTGGCGACGGCATAGCGTCTAA---TG--------TTC--------T--TGTTGCTCACCAAAACAAACTAAAAGCGAAACC---GCTCGATTTCTC-------TCTTAT--------CAGC------GGGAATCGTGGTCAAGGCC--------------------------------------------TGCGCCTCCACGGCACGCTT----------------AAGCCTCTTC--CGCGGA--CACAATTG-AGCAATGT-----TTTTGT-TTA-AAACTGGTTT----TTTCGTTATTT---------------CT---------------------------------------------------------------TTCTTT-TTTATTGC-A-C-GCTTGTTGTTGGTTGACAGTTTTCTGTCCGATTAACTGCGCCAT----------TTTGCGA
droRho1 scf7180000779169:15820-16096 + TGA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTTG-CGTCGCCAAA----ATA----GTTTGTCAGCACTGGCGACGGCACTGCGTCTAA---TG--------TTC-----------TGTTGCTCACCAAAACAAACAAAAAGCGAAACC---GCTCAAGTTCTC-------TCTTAT--------CAGC------GGGAATAGTGGTCAAGGCC--------------------------------------------TA-AGCTCCGCGGCGTGCTT----------------TAGCTTCTTC--CGCGGA--CACAATTG-GGCAATGT-----TTTTGT-TTA-AAACTGGTTT----TTT-CTTTTTT---------------CT---------------------------------------------------------------TTCTTT-TTTAAT-------GCTTGTTGTTGGTTGACAATTTGCTTTCCGAATAACTGCGCCAT----------TTTTCGA
droFic1 scf7180000453912:1041939-1042247 - TAA------CCA----GCCAACTA-AT---------A---------------------------------A------------------------------------------------------------------------------------------------------------------------------------------------------------------ACAGTATATGTT------------------------------------------------------TT--T-CTAAAAACTGAGT--------------------------------------------------------TCGGCTTTCAA-TTCCAA----GCTA----GTTTGGCAGCACTGGCGACGGCACAGCGTCT------G--------TTT-----------TGTAGCTTACCAAAACAAACTAAAAGCG-----------CGAGTTCTA-------TGTTAT--------CAGC------GGGAATAGTGGTCAAGGCC--------------------------------------------CGAGGCTCCACGGCACGCGT----------------AAGACTCTTC-------------AAATA-GCCAATGT-----TTTTGT-TTA-AAACTGGTTT----TTA-GTGACTT---------------TT---------------------------------------------------------------TTCTTT-TTTATTGT-CCC-GCTTGTTGTCGGTGGACAATTCTTGATCCGATT-ACTGCGCCAT----------TTTCCTA
droKik1 scf7180000302778:276767-277044 - -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A----GCCA----GGCTGGCAGCACTGGCGACGGCACTGCGTCTCA---TA--------TGC--------T--TTCCGCTTACCAAAACAAAATAAAAGCGAAACC---ACTCGACTTCTCTCGC-------AACGGCTTATCAGC------AACAATAGTGGTCAAGGCC--------------------------------------------TGCGGCTCCACGGCACGCTT----------------AAGCCTCTCC--TCCGGA--CACTCTTGGGGCAATGT-----TTTTGTTTTA-AAACTGGTTTTAAA---CGTT-CTT----TT-C-------------------------------------------------------------------------------------TC-TCC-GCTTGTTGATGGTTGACATTTT-CTGTCCGATTAACTGCGCCGTGGACGCCGTTGCTTCCG
droAna3 scaffold_13340:7679813-7680142 + AATAAT------------------------------TGT-------------------------------------------------------------------------------------TATT---------------------------------------------------------------AGTTTAAGAT-A-TCGGATA------------------------------TATTTTATTTACTTTATATATTAAGCTTTTTAT-------------------------------------------------------------------------------------TTTG-------------------------GGTA----GCCA----AGTTGGCAACACTGACGACGACACTGCGTCTAA---TA--------T-ATGTAGTTTTAGTTTTTCTCACCAAAACAAAC------CGAAACC---TCCCGATTGCTCCCGCCGCTCTTAT--------CAGG------AACAATAGTGGTCAAGGCC--------------------------------------------TGCGTCGTGGAGGCCCGCGT----------------AAA-----------------CAATCTTA-AGCAATGGTTTTTTTTTGT-TTA-AAACTGGTTTTAGT---CG-TTCTT----TT-C-------------------------------------------------------------------------------------GC-TCC-GCTTCCAACTGGTTGACAGTTT-CTGT-TGATT-ACTGCGCCATT---------GAGTTGG
droBip1 scf7180000396708:1164381-1164715 - TTTTTGAA-TCGGTTT----------------------T-------------------------------------------------------------------------------------TATG---------------------------------------------------------------ATTTTAGGAT-A-TCAGATA---------------------------------------TAATTTATATATTTAGCTTTATTT-------------------------------------------------------------------------------------TTCA-------------------------ACAA----GCCA----AGTTAGCAGCACTGACGACGACACTGTGTCTAA---TACATATACAT-ATGTAGTTTTAGTTTTTCTCACCAAAACAAAC------CGAAACC---TCCCGATTGTTCCCGCCAGTCTTAT--------CAGA------CCCAATAGTGGTCAAGGCC--------------------------------------------TGCGGCACCGTGACACGCGT----------------AAA-----------------CAATCTTA-GGCAATGT-TATTTTTTGT-TTA-AAACTGGTTTTAGT---CG-TTCTT----TT-T-------------------------------------------------------------------------------------GC-TCC-GCTTGCAACTGGTTGACAGTTT-TTGT-TGA-TAACTGCGCCGTA---------GAGTGGG
dp5 2:14398049-14398299 - GC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCTCCGTTCGGATCCG--------CTC-----------TGCCTCTTATCACAAAAAACCAC-----------------------------------------------------------AATGGTGGTCAAGGCTGCCTTCTGTGTGCGTGAGTGTGAGAGGGGGGGCTGGTTGGGGCTTG---------------CTTTGGCTTCGAGCGGAGTCAGTCTCTTTTGTGTGGAGCCGCTCTTG-GTCAATGT-----TTTTGTTTTA-AAACTGGTTTTATT----CTTATTT----TTAT-------------------------------------------------------------------------------------GC-GCC-TTCCGTCGCCCGTCAATTGTTT-TTGTTTTCCGAACTGCGCCTT----------AATTTTG
droPer2 scaffold_0:6029883-6030133 + GC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCTCCGTTCGGATCCG--------CTC-----------TGCCTCTTATCACAAAAAACCAC-----------------------------------------------------------AATGGTGGTCAAGGCTGCCTTCTGTGTGCGTGAGTGTGAGAGGGGGGGCTGGCTGGGGCTTG---------------CTTTGGCTTCGAGCGGAGTCAGTCTCTTTTGTGCGGAGCCGCTCTTG-GTCAATGT-----TTTTGTTTTA-AAACTGGTTTTATT----CTTATTT----TTAT-------------------------------------------------------------------------------------GC-GCC-TTCCGTCGCCCGTCAATTGTTT-TTGTTTTCCAAACTGCGCCTT----------AATTTTG
droWil2 scf2_1100000004902:6026598-6026679 + T-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTACAT-TTC-AAACTGGTTTTACTTTT-GTAATA----------------------------------------------------------------------------------------------GC-TTC-TTTTCTTGTAAGT--------T-TTACTTTACAAACTGCGCCTCA--------TCTTTTGA
droVir3 scaffold_12822:3084356-3084515 + GC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACGCCA----------------AA-ACTCTTT--AGTGGA------------CCAATGT-----TTGTCGTTTACAAACAGGTTT----TTT-GTTTTTT---------------ATTTCAAGCTATATACGCATTTGTTTTGGCCTC-TGTGAGTTGACAATTGTT-----------------------------------TTGTCAACCTTTTTATATTT-TTTTAATACTAACTGCGCCGC----------AGCTCTT
droMoj3 scaffold_6540:15156174-15156323 - CTTCAGTGG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACCAATGT-----TTCTGGGTTA-CAAACAGGTTTATTTTT-GTTTTTT---------------ATTTCAAGCTTTGTGCTCATTTGTTTTGGTCGGTTATGAGTTGACAATTGTTTTTTTCTTTTTTTTTTTTT-TTTGCTAT-CGTA----------------------------TATGTAACTGCGCCGC-----------------
droGri2 scaffold_14906:4625917-4626055 + GCA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGCCTAA---T----------TC-----------TGTTAGTGGACCAAACAACAAACAAACA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A-AAACTGGTTTTAGA---TTTTACTGTTTTTTATGTGTATTTTTCCAAGCTTTGCACGCATTTGT--------------------------------------------------------------------TTTGGTGTCTTTTGTAATACGTATTTAACTGCGCCA------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
GTCTTATAGCCCGTTCGCTAACTA-AA---------A---------------------------------A------------------------------------------------------------------------------------------------------------------------------------------------------------------CTATTAT-----TTTT----------------------------------------------------------AAAAATTGTATGTAGGTTCTTGCTCTTTTCTACTATGAAATGTTTTCTATAGCTAA-----------------------------AATAGCTA----GTTTGGCAGCACTGGCGACGGCACTCCGTCTAA---TG--------TTC-----------TGTCGCTTACCAAAACAAACCAAAAGCCAAACC---CCTCGAGTTCTC-------TCTTAT--------CAGC------GAGAATTGTGGTCAAGGCC--------------------------------------------TGCAGCTCCGCGGCACGCTT----------------AAGCCTCTCC--GGTGGA--CACAATTA-GGCAATGT-----TTTTGT-TTA-AAACTGGTTT----TTT-GTTATTT---------------CT---------------------------------------------------------------TTCTTT-TTTACTGT-CCCAGGTTGTTGTTGGTTGACAATTTACTGTCCGATTAACTGCGCCAT----------TTTTCCASizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
........................................................................................................................................................................................................................................................................................................................................................................................................................................GCACTCCGTCTAA---TG--------TTC-----------TGT..............................................................................................................................................................................................................................................................................................................................................................................................................................2111.00110000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACTGTCCGATTAACTGCG.....................1911.00110000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................ACTCCGTCTAA---TG--------TTC-----------TGT..............................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100100000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GC------GAGAATTGTGGTCAAGG.................................................................................................................................................................................................................................................................................................................................1911.00100000000000001000
droSec2
GTCTTTTAGCCCGTTCGCTCACTA-AA---------A---------------------------------A------------------------------------------------------------------------------------------------------------------------------------------------------------------CTATTAT-----TTGT----------------------------------------------------------AAAAATTGTATGTAGGCTCTTGCTCTTTGCTACTATTAAATATTTTCTATAGCTAA-----------------------------AATAGCTA----GGTTGGCAGTACTGGCGACGGCACTCCGTCTAA---TG--------TTC-----------TGTCGCTTACCAAAACAAACCAAAAGCCAAACC---CCTCGAGTTCTC-------TCTTAT--------CAGC------GAGAATTGTGGTCAAGGCC--------------------------------------------TGCAGCTCTGCGGCACGCTT----------------AAGCCTCTCC--GGCGGA--CACAATTA-GGCAATGT-----TTTTGT-TTA-AAACTGGTTT----TTT-GTTATTT---------------CT---------------------------------------------------------------TTCTTT-TTTACTGT-CCCAGGTTGTTGTTGGTTGACAATTTACTGTCCGATTAACTGCGCCAT----------TTTTCCASizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGC------GAGAATTGTGGTCAAGGCC--------------------------------------------TG.................................................................................................................................................................................................................................................................................2511.0010100
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T-TTA-AAACTGGTTT----TTT-GTTA....................................................................................................................................................................2111.0010010
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTAT--------CAGC------GAGAATTGTGGTCAAGGC................................................................................................................................................................................................................................................................................................................................2711.0010010
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T-TTTACTGT-CCCAGGTTGTTG.....................................................2111.0010001
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................C-------TCTTAT--------CAGC------GAGAATTGTG........................................................................................................................................................................................................................................................................................................................................2111.0010001
............................................................................................................................................................................................................................................................................................................................................................................................................GCTA----GGTTGGCAGTACTGGCGACGGC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010001
dm3
CTCTTTTAGTCCGTTCGCTAACTA-TA---------A---------------------------------A------------------------------------------------------------------------------------------------------------------------------------------------------------------CTATTAT-----TTAT----------------------------------------------------------AAAAATTGTATTTGGGTTCTACCTCTTTGCTACTATGAAATATTTGCTATAGCTA-----------------------------AA----ATA----GGTTGGCAGCACTGGCGACGGCACTCCGTCTAA---TG--------TTC-----------TGTCGCTTACCAAAACAAACCAAAAGCCA-ACC---CCTTGAGTTCTC-------TCTTAT--------CAGC------GGGAATTGTGGTCAAGGCC--------------------------------------------TGCAGCTTCGCGGCACGCTT----------------AAGCATCTCC--GGCGGA--CACAATTA-GGCAATGT-----TATTGT-TTA-AAACTGGTTT----TCT-GTTATTT---------------CT---------------------------------------------------------------CTCTTT-TTTACTGT-CTCAGGTTGTTGTTGGTTGACGATTTACTGTCCGATTAACTGCGCCAT----------TTTTCCASizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAT--------CAGC------GGGAATTGTGGTC.....................................................................................................................................................................................................................................................................................................................................2115.0050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000010000
...............................................................................................................................................................................................................................................................................................................................................................................................................A----GGTTGGCAGCACTGGCGACG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2113.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................ACTCCGTCTAA---TG--------TTC-----------TGT..............................................................................................................................................................................................................................................................................................................................................................................................................................1913.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AT--------CAGC------GGGAATTGTGGT......................................................................................................................................................................................................................................................................................................................................1813.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000100100000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GC------GGGAATTGTGGTCAAGGCC--------------------------------------------...................................................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGTTGTTGGTTGACGATTTAC.....................................2212.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000100000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................ACTCCGTCTAA---TG--------TTC-----------TGTC.............................................................................................................................................................................................................................................................................................................................................................................................................................2012.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000001000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GT-CTCAGGTTGTTGTTGGT................................................1912.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAACAAACCAAAAGCCA-ACC---C............................................................................................................................................................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGTTCTC-------TCTTAT--------CAGC------GGG...............................................................................................................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTTGTTGGTTGACGATTTA......................................2212.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGC------GGGAATTGTGGTCAAGGCC--------------------------------------------TG.................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTAT--------CAGC------GGGAATTGTGGT......................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTACTGT-CTCAGGTTGTTGTTGG.................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAGGTTGTTGTTGGTTGACGAT.........................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T--------CAGC------GGGAATTGTGGTCAAGG.................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................ATA----GGTTGGCAGCACTGGCGACGGC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A--CACAATTA-GGCAATGT-----TATT.................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTAA---TG--------TTC-----------TGTCGCTTACCAAA...................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCC--GGCGGA--CACAATTA-G.................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGTTGGTTGACGATTTACTGT..................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGAATTGTGGTCAAGGCC--------------------------------------------T..................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCC--GGCGGA--CACAATTA-GGCAATG...........................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AT--------CAGC------GGGAATTGTGGTC.....................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTT----------------AAGCATCTCC--GGCGG..............................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGTTCTC-------TCTTAT--------CAGC------GG................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTTACTGTCCGATTAACTGCGCCAT----------.......2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTTAT--------CAGC------GGGAATTGTGGTC.....................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000
........................................................................................................................................................................................................................................................................................................................................................................TA-----------------------------AA----ATA----GGTTGGCAGCACTGGCGACGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................ACTCCGTCTAA---TG--------TTC-----------TGTCGC...........................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCC--GGCGGA--CACAATTA-GGC...............................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTTGTTGGTTGACGATTTACTG...................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCAAAAGCCA-ACC---CCTTGA.......................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGCTT----------------AAGCATCTCC--GGCGG..............................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCAGGTTGTTGTTGGTTGAC............................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCC--------------------------------------------TGCAGCTTCGCGGCAC...................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTT---------------CT---------------------------------------------------------------CTCTTT-TTTACTGG-T................................................................2060.1710000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000
droEre2
CTGTTTTGGTACGTTCTTCAA-----A----CCATTA--A-TCTTCTCAAATTAGCTTGCCTAGATTAGCA------------------------------------------------------------------------------------------------------------------------------------------------------------------CTATTAT-----TTATATAATTTATACTTTTAGATCTTGTTACTAGCGAATATTTGGTAAGATCAGCACTTAAA-------------------------------------------------------A-----------------------------AATAGCTAGGCTGGCTAGCAGCACTGGCGACGACACTTCGTCTAA---TG--------TTC-----------T-TTGCTTACCAAAACAAACCAAACGCCAAACC---TCTCGAGTTCTC-------TCTTAT--------CAGC------GGAAATTTTGGTCAAGGCC--------------------------------------------TGCAGCTCCGCGGCACGCTT----------------GAGCCTCTTC--GGCGGA--CACTATTA-GGCAATGT-----TTTTGT-TTA-AAACTGGTTT----TTT-GTTATTT----T----------TT---------------------------------------------------------------TTCTTT-TTTACTGT-CCTAGGTTGTTGTTGGTTGACAATTTACTGTCCGATTAACTGCGCCAT----------TTTTCCASizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
No Reads
droYak3
CTCTTA----------GCAACCTA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AA-------------------------------------------------------A-----------------------------AATAGCTA----GGCTGGCAGCACTGGCGACGGCACTTCGTCTAA---TG--------TTC-----------TTTCGCTTACCAAAACAAACCAATAGCCAAACC---CCTCGAGTTCTC-------TCTTAT--------CAGC------GGGAATTGTGGTCAAGGCC--------------------------------------------TACAGCTCCGCGGCACGCTT----------------AAGCTTCTCC--GGCGGA--CACAATTA-GGCAATGT-----TTTTGT-TTA-AAACTGGATT----TTT-GTTATTT----TT---------TT---------------------------------------------------------------TTCTTT-TTTACTGT-CCTAGGTTGTTGTTGGTTGACAATTTACTGTCCGATTAACTGCGCCAT----------TTTTCCASizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGGTCAAGGCC--------------------------------------------TACAGCTCC..........................................................................................................................................................................................................................................................................2211.00100100000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTACTGTCCGATTAACTGCGCC...................2411.00100000010000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTT----------------AAGCTTCTCC--GGCGGA--CAC........................................................................................................................................................................................................................2311.00100000010000
droEug1
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A----GCTA----ATTTAGCAGCACTGGAGACGGCACTGCGTCTAAA--TG--------TTC-----------TGTTGCTCACCAAAACAAACTAAAAGCGAAACCACCGCTTGCGGTCTC-------TCTTAT--------CAGC------AGGAATAGTGGTCAAGGCC--------------------------------------------TGCGTCTCCGCAGCACACTC----------------AAGCCACTTC--GGTGGA--CACAATTG-AGAAATGT-----TTTTGT-TTA-AAACTGGTTT----TTC-CTTATTT---------------CA---------------------------------------------------------------TTCTT--TTTATTGT-CCC-GCTTGTTGTTGGTTGACAATATTCTGTCCGATTAACTGCGCCAT----------T--TTCASizeHit CountTotal NormTotal
No Reads
droBia1
TTTTTAAACCCCTTTTGTTA-C-------------AA--GTTTTTCTCATATTA------------------TAGTATTTTTTTACAGTTTTTTTT----------------------------TGTT---------------------------------------------------------------AGCCTAACAT-G------------------------AAAAAAAAAGTTTTTGTC------------------------------------------------------TACTTAAA-------------------------------------------------------AAATAGCCACATTTGGCTATT---TTCTTA----GCTA----GCCTGGCAGCTCTGACGACGGCGCTGCGTCTAA---CG--------TTC-----------TGTTGCTTACCAAAACAAACTAAAAACGAAACC---GCTCGAGTTCTC-------TCTTAT--------CGCCAAGAATTGGAATGGTGGTCAAGGCC--------------------------------------------TGCGGCTCCGCGGCACGCTC----------------CGGC----------CGGA--CACAATTG-GGCAATGT-----TTTTGT-TTA-AAACAGGTTT----TTTCG-CTTTT---------------TT---------------------------------------------------------------CTCTTTTTTAATTGC-CC-----TGTTGTTGACTGACAATTTACTGTCCGATTAACTGCGCCAT----------TTTTCGASizeHit CountTotal NormTotal
No Reads
droTak1
ATTTTGTAGTATCTGAACTGGATA-AA---------A---------------------------------ATTAGTATTT-TTGGAAGATTTTTTAAAATGGCCTTTTACATGGAATTCTTTTTAGCTTTAATAAATGTATAATTGCACTGCGAATTTCTCAACTAACTAATTATGTCATTAAATTAATACAGCTTAACA---------------------------------------------------------------------------------------------------------AA-------------------------------------------------------ATACAGCTAAATCTAGCTAATAA-TTCCTA----GCTA----GCTCGGCAGCACTGGCGACGGCACTGCGTCTAA---TG--------TTC-----------TGTTGCTCACCAAAACAAACGAAAAGCGAAACC---------GTTCTC-------TCTTATCGGCTCCGCGGG---AACGGGAATAGTGGTCAAGGCC--------------------------------------------TGCGGCTCCGCGGCACGCTT----------------AAGCCTCTTC--GGCGGA--CACAATTG-GGCAATGT-----TTTTGT-TTA-AAACTGGTTT----TTTCGCCAATT---------------TA--------------------------------------------------------------TT--TTT-TTTA-TGCCCCC-GCTCGT-GTTG-----------ACTGTCCGATTAACTGCGCCAT----------T-TTCGASizeHit CountTotal NormTotal
No Reads
droEle1
CTCTATTAGGCTTTTGGGTCCCCGCAACACT-----CTT-------------------------------------------------------------------------------------AA---------------------------------------------------------------ACACCTTAAAATTATTTGGACGTCCTTAATTTCCAATTAATAAAAACGTAT------------------------------------------------------------T--T-AA-------------------------------------------------------AAAAAGCTAGATCTGGCATT-AATCGTCAA----GCCA----GTTTGGCAGCACTGGCGACGGCATAGCGTCTAA---TG--------TTC--------T--TGTTGCTCACCAAAACAAACTAAAAGCGAAACC---GCTCGATTTCTC-------TCTTAT--------CAGC------GGGAATCGTGGTCAAGGCC--------------------------------------------TGCGCCTCCACGGCACGCTT----------------AAGCCTCTTC--CGCGGA--CACAATTG-AGCAATGT-----TTTTGT-TTA-AAACTGGTTT----TTTCGTTATTT---------------CT---------------------------------------------------------------TTCTTT-TTTATTGC-A-C-GCTTGTTGTTGGTTGACAGTTTTCTGTCCGATTAACTGCGCCAT----------TTTGCGASizeHit CountTotal NormTotal
No Reads
droRho1
TGA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTTG-CGTCGCCAAA----ATA----GTTTGTCAGCACTGGCGACGGCACTGCGTCTAA---TG--------TTC-----------TGTTGCTCACCAAAACAAACAAAAAGCGAAACC---GCTCAAGTTCTC-------TCTTAT--------CAGC------GGGAATAGTGGTCAAGGCC--------------------------------------------TA-AGCTCCGCGGCGTGCTT----------------TAGCTTCTTC--CGCGGA--CACAATTG-GGCAATGT-----TTTTGT-TTA-AAACTGGTTT----TTT-CTTTTTT---------------CT---------------------------------------------------------------TTCTTT-TTTAAT-------GCTTGTTGTTGGTTGACAATTTGCTTTCCGAATAACTGCGCCAT----------TTTTCGASizeHit CountTotal NormTotal
No Reads
droFic1
TAA------CCA----GCCAACTA-AT---------A---------------------------------A------------------------------------------------------------------------------------------------------------------------------------------------------------------ACAGTATATGTT------------------------------------------------------TT--T-CTAAAAACTGAGT--------------------------------------------------------TCGGCTTTCAA-TTCCAA----GCTA----GTTTGGCAGCACTGGCGACGGCACAGCGTCT------G--------TTT-----------TGTAGCTTACCAAAACAAACTAAAAGCG-----------CGAGTTCTA-------TGTTAT--------CAGC------GGGAATAGTGGTCAAGGCC--------------------------------------------CGAGGCTCCACGGCACGCGT----------------AAGACTCTTC-------------AAATA-GCCAATGT-----TTTTGT-TTA-AAACTGGTTT----TTA-GTGACTT---------------TT---------------------------------------------------------------TTCTTT-TTTATTGT-CCC-GCTTGTTGTCGGTGGACAATTCTTGATCCGATT-ACTGCGCCAT----------TTTCCTASizeHit CountTotal NormTotal
No Reads
droKik1
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A----GCCA----GGCTGGCAGCACTGGCGACGGCACTGCGTCTCA---TA--------TGC--------T--TTCCGCTTACCAAAACAAAATAAAAGCGAAACC---ACTCGACTTCTCTCGC-------AACGGCTTATCAGC------AACAATAGTGGTCAAGGCC--------------------------------------------TGCGGCTCCACGGCACGCTT----------------AAGCCTCTCC--TCCGGA--CACTCTTGGGGCAATGT-----TTTTGTTTTA-AAACTGGTTTTAAA---CGTT-CTT----TT-C-------------------------------------------------------------------------------------TC-TCC-GCTTGTTGATGGTTGACATTTT-CTGTCCGATTAACTGCGCCGTGGACGCCGTTGCTTCCGSizeHit CountTotal NormTotal
No Reads
droAna3
AATAAT------------------------------TGT-------------------------------------------------------------------------------------TATT---------------------------------------------------------------AGTTTAAGAT-A-TCGGATA------------------------------TATTTTATTTACTTTATATATTAAGCTTTTTAT-------------------------------------------------------------------------------------TTTG-------------------------GGTA----GCCA----AGTTGGCAACACTGACGACGACACTGCGTCTAA---TA--------T-ATGTAGTTTTAGTTTTTCTCACCAAAACAAAC------CGAAACC---TCCCGATTGCTCCCGCCGCTCTTAT--------CAGG------AACAATAGTGGTCAAGGCC--------------------------------------------TGCGTCGTGGAGGCCCGCGT----------------AAA-----------------CAATCTTA-AGCAATGGTTTTTTTTTGT-TTA-AAACTGGTTTTAGT---CG-TTCTT----TT-C-------------------------------------------------------------------------------------GC-TCC-GCTTCCAACTGGTTGACAGTTT-CTGT-TGATT-ACTGCGCCATT---------GAGTTGGSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCAAGGCC--------------------------------------------TGCGTCGTGGA........................................................................................................................................................................................................................................................................2012.002000002
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGTCAAGGCC--------------------------------------------TGCGTCGTGG.........................................................................................................................................................................................................................................................................2111.001100000
......................................................................................................................................................................................................................................................................................................................................................................................................................TTGGCAACACTGACGACGA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001100000
droBip1
TTTTTGAA-TCGGTTT----------------------T-------------------------------------------------------------------------------------TATG---------------------------------------------------------------ATTTTAGGAT-A-TCAGATA---------------------------------------TAATTTATATATTTAGCTTTATTT-------------------------------------------------------------------------------------TTCA-------------------------ACAA----GCCA----AGTTAGCAGCACTGACGACGACACTGTGTCTAA---TACATATACAT-ATGTAGTTTTAGTTTTTCTCACCAAAACAAAC------CGAAACC---TCCCGATTGTTCCCGCCAGTCTTAT--------CAGA------CCCAATAGTGGTCAAGGCC--------------------------------------------TGCGGCACCGTGACACGCGT----------------AAA-----------------CAATCTTA-GGCAATGT-TATTTTTTGT-TTA-AAACTGGTTTTAGT---CG-TTCTT----TT-T-------------------------------------------------------------------------------------GC-TCC-GCTTGCAACTGGTTGACAGTTT-TTGT-TGA-TAACTGCGCCGTA---------GAGTGGGSizeHit CountTotal NormTotal
No Reads
dp5
GC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCTCCGTTCGGATCCG--------CTC-----------TGCCTCTTATCACAAAAAACCAC-----------------------------------------------------------AATGGTGGTCAAGGCTGCCTTCTGTGTGCGTGAGTGTGAGAGGGGGGGCTGGTTGGGGCTTG---------------CTTTGGCTTCGAGCGGAGTCAGTCTCTTTTGTGTGGAGCCGCTCTTG-GTCAATGT-----TTTTGTTTTA-AAACTGGTTTTATT----CTTATTT----TTAT-------------------------------------------------------------------------------------GC-GCC-TTCCGTCGCCCGTCAATTGTTT-TTGTTTTCCGAACTGCGCCTT----------AATTTTGSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTG---------------CTTTGGCTTCGAGCGG..................................................................................................................................................................................................................................................2111.0010000001000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGGGGGGCTGGTTGGGG.....................................................................................................................................................................................................................................................................................1911.0010100000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCTTTTGTGTGGAGCCGC........................................................................................................................................................................................................................1911.0010100000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAGTCTCTTTTGTGTGGAGC...........................................................................................................................................................................................................................2111.0010100000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGGGGGGCTGGTTGGGGC....................................................................................................................................................................................................................................................................................1911.0010100000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTATT----CTTATTT----TTAT-------------------------------------------------------------------------------------GC-GC...............................................................2011.0010100000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGGGGGGCTGGTTGGGGCT...................................................................................................................................................................................................................................................................................2111.0010000000001
droPer2
GC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCTCCGTTCGGATCCG--------CTC-----------TGCCTCTTATCACAAAAAACCAC-----------------------------------------------------------AATGGTGGTCAAGGCTGCCTTCTGTGTGCGTGAGTGTGAGAGGGGGGGCTGGCTGGGGCTTG---------------CTTTGGCTTCGAGCGGAGTCAGTCTCTTTTGTGCGGAGCCGCTCTTG-GTCAATGT-----TTTTGTTTTA-AAACTGGTTTTATT----CTTATTT----TTAT-------------------------------------------------------------------------------------GC-GCC-TTCCGTCGCCCGTCAATTGTTT-TTGTTTTCCAAACTGCGCCTT----------AATTTTGSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGGGGGGCTGGCTGGGGC....................................................................................................................................................................................................................................................................................2011.001000001
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGGGGGGCTGGCTGGGGCT...................................................................................................................................................................................................................................................................................2011.001100000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGGGGGGCTGGCTGGGGC....................................................................................................................................................................................................................................................................................1920.501010000
droWil2
T-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTACAT-TTC-AAACTGGTTTTACTTTT-GTAATA----------------------------------------------------------------------------------------------GC-TTC-TTTTCTTGTAAGT--------T-TTACTTTACAAACTGCGCCTCA--------TCTTTTGASizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
No Reads
droVir3
GC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACGCCA----------------AA-ACTCTTT--AGTGGA------------CCAATGT-----TTGTCGTTTACAAACAGGTTT----TTT-GTTTTTT---------------ATTTCAAGCTATATACGCATTTGTTTTGGCCTC-TGTGAGTTGACAATTGTT-----------------------------------TTGTCAACCTTTTTATATTT-TTTTAATACTAACTGCGCCGC----------AGCTCTTSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTGGCCTC-TGTGAGTTGAC.....................................................................................................2112.002000000200000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAGTTGACAATTGTT-----------------------------------TTGT.......................................................2111.001000000000000000000000000000000010000000000000000000000000000000
droMoj3
CTTCAGTGG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACCAATGT-----TTCTGGGTTA-CAAACAGGTTTATTTTT-GTTTTTT---------------ATTTCAAGCTTTGTGCTCATTTGTTTTGGTCGGTTATGAGTTGACAATTGTTTTTTTCTTTTTTTTTTTTT-TTTGCTAT-CGTA----------------------------TATGTAACTGCGCCGC-----------------SizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGTTTTGGTCGGTTATGAGTTGAC.....................................................................................................2511.001100000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTTTTTTTCTTTTTTTTTTTT............................................................................22190.051000010
droGri2
GCA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGCCTAA---T----------TC-----------TGTTAGTGGACCAAACAACAAACAAACA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A-AAACTGGTTTTAGA---TTTTACTGTTTTTTATGTGTATTTTTCCAAGCTTTGCACGCATTTGT--------------------------------------------------------------------TTTGGTGTCTTTTGTAATACGTATTTAACTGCGCCA------------------SizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads

Generated: 05/18/2015 at 09:02 PM