ID:

dsi_4609

 Coordinate:

2r:5870440-5870589 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-19.7 -19.3 -19.3

Flybase annnotation

CDS [2r_5870590_5871990_-]; exon [2r_5870590_5872128_-]; intron [2r_5870067_5870589_-]

No Repeatable elements found

Sense Strand Reads

##################################################--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
AGCCCATGCCGGCCTTCGGTGACCTGACCATGGATCAGGAAATGGAACCGGTAAGGTCTCGTCGTCGTCGGATTGCCAGTTCGCCAGTTGTCATTTACCTACGAAGAAGCGAAGAAGCCCCGCAAGTGATATGTTGGCCCCCTTATAGTGTGTGTTCCAGAGTGTCATTCAACTGTGCGGGCGGCGGGCGGTGGTAATTGCCCAGGGGGTCTCGTCAACTAACCAGAAAATCTCAGTGCGGATTGACGAG
********************************************************............(((...((...(((((...((((.........))))....)))))...)).)))..((((((((.((((...................)))).))))))))......*************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M023
head
 SRR902009
testis
 SRR553487
NRT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
 SRR553486
Makindu_3 day-old ovaries
 SRR553485
Chicharo_3 day-old ovaries
 M024
male body		 M025
embryo
 SRR553488
RT_0-2 hours eggs
.....................................................................................................................................................................................................................................ATCTCAGTGCGGATTGAAGC. 20 2 2 1.00 2 0 0 0 2 0 0 0 0 0
....................................................................................................................................................TGTGTGTTCCAGAGTGTCATTCAACTG........................................................................... 27 0 1 1.00 1 1 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................................TCAACTAACCAGAAAATCTC................ 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0
.....ATGCCGGCCTTCGGTGACCTGACC............................................................................................................................................................................................................................. 24 0 1 1.00 1 1 0 0 0 0 0 0 0 0
..............................................................................................................................................................................GTGCGGGCGGCGGGCGGTGGTA...................................................... 22 0 1 1.00 1 0 1 0 0 0 0 0 0 0
........................................................TCTCGTCGTCGTCGGATTGCC............................................................................................................................................................................. 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0
...................................................TAAGGTCTCGTCGTCGTCGGAA................................................................................................................................................................................. 22 1 1 1.00 1 0 1 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................................ATCTCAGTTCGGATTGTC... 18 2 9 0.78 7 0 0 3 0 1 0 1 2 0
.....................................................................................................................................................................................................................................ATCTCAGTCCGGATTGG.... 17 2 12 0.50 6 0 0 2 0 2 1 0 0 1
................................................................................................................................................................................GCGGGCGGCGGGCGGTGGTT...................................................... 20 1 3 0.33 1 0 1 0 0 0 0 0 0 0
......................................................................................................................................................................................................................................TCTCAGTTCGGATTGA.... 16 1 6 0.33 2 0 0 1 0 0 1 0 0 0
.......................................................GTCTCGTCGTGGTCG.................................................................................................................................................................................... 15 1 8 0.25 2 0 0 2 0 0 0 0 0 0
....................................................................................................................................................................................................................................AATCTCAGTCCGGATTGG.... 18 2 4 0.25 1 0 0 0 0 1 0 0 0 0
................................................................................................................................................................................................................................AAAAGATCTCAGTGCGGAT....... 19 2 4 0.25 1 0 0 0 0 0 0 1 0 0
......................................................GGTCTCGTCGTGGTCG.................................................................................................................................................................................... 16 1 4 0.25 1 0 0 1 0 0 0 0 0 0
......................................................................................................................................................................................................................................TCTCAGTCCGGATTG..... 15 1 9 0.22 2 0 0 0 0 2 0 0 0 0
.......................................................................................................................................................................................................................................CTCAGTGCGGACTGA.... 15 1 6 0.17 1 0 0 0 0 0 1 0 0 0
.....................................................................................................................................................................................................................................ATCTCAGTCCGGATT...... 15 1 7 0.14 1 0 0 0 0 1 0 0 0 0
....................................................................................................................................................................................................................................TATCTCAGTCCGGATTG..... 17 2 7 0.14 1 0 0 0 0 1 0 0 0 0
....................................................................................................................................................................................................................................AATCTCAGTTCGGATTGT.... 18 2 8 0.13 1 0 0 0 1 0 0 0 0 0
......................................................GGTCGCGTCGTCGTCGGC.................................................................................................................................................................................. 18 2 8 0.13 1 1 0 0 0 0 0 0 0 0
.....ATGCAGGCCTTCGGT...................................................................................................................................................................................................................................... 15 1 8 0.13 1 0 0 0 0 0 0 0 0 1
................................................................................................................................................................................................................................AGACATTCTCAGTTCGGATT...... 20 3 9 0.11 1 1 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................TAATTGCCCAGTGGG......................................... 15 1 9 0.11 1 0 0 0 0 0 1 0 0 0
....................GACCTGACGACGGATCA..................................................................................................................................................................................................................... 17 2 16 0.06 1 0 0 1 0 0 0 0 0 0
................................................................................................................................................................................................................................AGCCAATCTCAGTTCGGATT...... 20 3 17 0.06 1 1 0 0 0 0 0 0 0 0
........................................................................................TGTTATTTACTTAGGAAGAA.............................................................................................................................................. 20 3 18 0.06 1 0 0 1 0 0 0 0 0 0
.....................................................................................................CGAAGCAGCGAAGAACC.................................................................................................................................... 17 2 18 0.06 1 0 0 1 0 0 0 0 0 0
.....................................................................................................................................................................................................................................ATCACAGTTCGGATTGA.... 17 2 19 0.05 1 0 0 0 0 0 1 0 0 0
.........CGGCGCGCGGTGACCTGA............................................................................................................................................................................................................................... 18 3 20 0.05 1 0 0 0 0 0 1 0 0 0

Anti-sense strand reads

TCGGGTACGGCCGGAAGCCACTGGACTGGTACCTAGTCCTTTACCTTGGCCATTCCAGAGCAGCAGCAGCCTAACGGTCAAGCGGTCAACAGTAAATGGATGCTTCTTCGCTTCTTCGGGGCGTTCACTATACAACCGGGGGAATATCACACACAAGGTCTCACAGTAAGTTGACACGCCCGCCGCCCGCCACCATTAACGGGTCCCCCAGAGCAGTTGATTGGTCTTTTAGAGTCACGCCTAACTGCTC
***************************************************************************............(((...((...(((((...((((.........))))....)))))...)).)))..((((((((.((((...................)))).))))))))......******************************************************** 		Read size # Mismatch Hit Count Total Norm Total M024
male body		 SRR618934
dsim w501 ovaries
 SRR553488
RT_0-2 hours eggs
 SRR553485
Chicharo_3 day-old ovaries
 SRR553486
Makindu_3 day-old ovaries
.....................................................................CCTAACGGTCAAGCGGTCAAC................................................................................................................................................................ 21 0 1 1.00 1 1 0 0 0 0
.......................................................................TCGCGGTCAAGCGGGCAACAG.............................................................................................................................................................. 21 3 2 0.50 1 0 1 0 0 0
................................................................................................................................................................TCACATGAAGTTGACACGGC...................................................................... 20 3 7 0.14 1 0 0 0 1 0
..............................................................................CAAGCGGTCAACGGTAAAG......................................................................................................................................................... 19 2 8 0.13 1 1 0 0 0 0
............................................................................................................................................................................................................................TTGGTCGCTTAGAGTCA............. 17 2 10 0.10 1 0 0 1 0 0
...........................................................................................................TCCCTCTTTCGGGGCGTTC............................................................................................................................ 19 3 19 0.05 1 0 0 1 0 0
..........................................................................................................................................................AAGGTTTCACGGTAAGTT.............................................................................. 18 2 20 0.05 1 0 0 0 0 1
............................................CTTGGCCACTCGAGAG.............................................................................................................................................................................................. 16 2 20 0.05 1 0 1 0 0 0
......................................................................................................................................................................................GCGCCCGCCAGCATTA.................................................... 16 2 20 0.05 1 0 0 1 0 0
..........................................................................TGGTCAAGCGGTGAGCAGT............................................................................................................................................................. 19 3 20 0.05 1 0 0 1 0 0

Generated: 04/24/2015 at 01:41 AM