ID:

dsi_4597

 Coordinate:

3r:4733997-4734146 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-29.1 -29.0 -28.8

Flybase annnotation

CDS [3r_4733468_4733950_-]; five_prime_UTR [3r_4733951_4733996_-]; exon [3r_4733468_4733996_-]; intron [3r_4733997_4740320_-]

No Repeatable elements found

Sense Strand Reads

--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
TCGAATCGAACTGAATCATTGATTAGGCCACGGACCGAGGACTATGGCTTCCTTTAAAAAGTACACCAAAGTCCAGGTTTCAACCTTACGTTTATAAGTGAAGGCATACATTTAGGTATGGAAGGTGATATTGAGGCCGAAAATATACATAAAGAATAAGCTTGCTAGATTCTGGTATTTATGATTTATTGATTTTGCAGGACCGGATCACTATGAGCGACAGAGGAGCTCGGTAATGATGATAGCATGA
**************************************************................(((((((..(((((((((((..(((...((((((........))))))...)))..)))).....)))))))..........(((((..(((((..((((((...)))))))))))..))))).)))))))...************************************************** 		Read size # Mismatch Hit Count Total Norm Total M023
head
 M024
male body		 O002
Head
 SRR553487
NRT_0-2 hours eggs
 SRR553485
Chicharo_3 day-old ovaries
 SRR902008
ovaries
 SRR553486
Makindu_3 day-old ovaries
 SRR553488
RT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
....................................................................................................................................................................................................................................CTCGGTAAGGATTATAGC.... 18 2 2 1.50 3 2 1 0 0 0 0 0 0 0
...................................................................................................................GTATGGAAGGTGATATTG..................................................................................................................... 18 0 1 1.00 1 0 0 1 0 0 0 0 0 0
....................................................................................................................................................................................................................................CTCGGTAATTATTATAGC.... 18 2 4 0.75 3 2 1 0 0 0 0 0 0 0
....................................................................................................................................................................................................................................CTCGGTAAGGATTATAGCCT.. 20 3 3 0.67 2 0 2 0 0 0 0 0 0 0
...............................GGACCGAGGACTGCGGCTTCT...................................................................................................................................................................................................... 21 3 3 0.33 1 0 0 0 1 0 0 0 0 0
..........................................................................................................................ATGTGGTATTGAGGACGAAA............................................................................................................ 20 3 6 0.33 2 0 0 0 0 0 2 0 0 0
.......................................................................................................................................................................GATTCTGGTATTAAGG................................................................... 16 2 20 0.30 6 0 0 0 0 6 0 0 0 0
....................................................................................................................................................................................................................ATGAGCGGTAGAGGAGC..................... 17 2 8 0.25 2 0 0 0 2 0 0 0 0 0
..........................................TATGGCGTCATTTAAAAA.............................................................................................................................................................................................. 18 2 10 0.20 2 0 0 0 0 1 0 1 0 0
........................................................................................................................................................................ATTCTGGTCTTTGTGATGTAT............................................................. 21 3 5 0.20 1 0 0 0 0 0 1 0 0 0
.......................................................................................................................................................................................................................................TTTAATGATGATAGCATG. 18 2 11 0.18 2 0 2 0 0 0 0 0 0 0
....................................................................................................................................................................................................................................CTCGGTAATTATTATAGCC... 19 3 12 0.17 2 2 0 0 0 0 0 0 0 0
.......................................................................................................................................................................GATTCTGGTATTAAGGA.................................................................. 17 2 6 0.17 1 0 0 0 0 1 0 0 0 0
....................................................................................................................................................................................................................................CTCGGTAAGGATTATAGCC... 19 3 11 0.09 1 1 0 0 0 0 0 0 0 0
...........................CCACGGCCATAGGACTATG............................................................................................................................................................................................................ 19 3 17 0.06 1 0 0 0 0 0 0 0 1 0
.................................................................................GACCTTACGTTTATATG........................................................................................................................................................ 17 2 20 0.05 1 0 0 0 0 0 0 0 0 1

Anti-sense strand reads

AGCTTAGCTTGACTTAGTAACTAATCCGGTGCCTGGCTCCTGATACCGAAGGAAATTTTTCATGTGGTTTCAGGTCCAAAGTTGGAATGCAAATATTCACTTCCGTATGTAAATCCATACCTTCCACTATAACTCCGGCTTTTATATGTATTTCTTATTCGAACGATCTAAGACCATAAATACTAAATAACTAAAACGTCCTGGCCTAGTGATACTCGCTGTCTCCTCGAGCCATTACTACTATCGTACT
**************************************************................(((((((..(((((((((((..(((...((((((........))))))...)))..)))).....)))))))..........(((((..(((((..((((((...)))))))))))..))))).)))))))...************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR618934
dsim w501 ovaries
 SRR553488
RT_0-2 hours eggs
 GSM343915
embryo
 M053
female body
 SRR553487
NRT_0-2 hours eggs
 SRR553486
Makindu_3 day-old ovaries
 SRR553485
Chicharo_3 day-old ovaries
 M024
male body		 M023
head
.......................................................................AGCTCCAAATTTGGCATGC................................................................................................................................................................ 19 3 5 73.40 367 287 0 54 26 0 0 0 0 0
.......................................................................AGCTTCAAATTTGGAATGC................................................................................................................................................................ 19 3 10 17.30 173 14 0 110 49 0 0 0 0 0
.........................................................................................................................................................................................................TGGCCTAGTGATACT.................................. 15 0 1 11.00 11 1 8 0 0 1 1 0 0 0
.........................................................................................................................................................................................................TGGCCTAGTGATACTGG................................ 17 1 2 5.00 10 2 6 0 0 1 0 1 0 0
.........................................................................................................................................................................................................TGGCCTAGTGATACTGGC............................... 18 1 2 4.50 9 0 7 0 0 2 0 0 0 0
.........................................................................................................................................................................................................TGGCCTAGTGATACTG................................. 16 1 3 4.33 13 1 8 0 0 3 0 1 0 0
.........................................................................................................................................................................................................TGGCCTAGTGATACTGGCT.............................. 19 1 2 4.00 8 0 6 0 0 1 1 0 0 0
.............................................................................................................................................................................................................CTAGTGATACTGGCT.............................. 15 1 4 3.25 13 0 12 0 0 0 1 0 0 0
.........................................................................................................................................................................................................TGGCCTAGTGATACTGGCTG............................. 20 1 2 3.00 6 0 4 0 0 0 2 0 0 0
.........................................................................................................................................................................................................TGGCCTAGTGATACA.................................. 15 1 2 3.00 6 1 3 0 0 0 1 1 0 0
............................................................................................................................................................................................................CCTAGTGATACTGGCT.............................. 16 1 2 2.00 4 0 2 0 0 2 0 0 0 0
..........................................................................................................................................................................................................GGCCTAGTGATACTGGC............................... 17 1 2 2.00 4 0 2 0 0 0 2 0 0 0
.........................................................................................................................................................................................................TGGCCTAGTGATTCT.................................. 15 1 3 1.67 5 0 2 0 0 2 1 0 0 0
.........................................................................................................................................................................................................TGGCCTAGTGATACTGGA............................... 18 2 5 1.60 8 4 3 0 0 0 1 0 0 0
..................................................GGAAATTGTGCATTTGGTTTC................................................................................................................................................................................... 21 3 2 1.50 3 0 0 0 0 0 3 0 0 0
............................................................................................................................................................................................................CCTAGTGATACTGGCTG............................. 17 1 2 1.00 2 0 2 0 0 0 0 0 0 0
......................................................................CAGTTCCAAAGTTGGCATGC................................................................................................................................................................ 20 2 1 1.00 1 0 0 1 0 0 0 0 0 0
.......................................................................AGCTCCAAATTTGGAATGC................................................................................................................................................................ 19 2 1 1.00 1 0 0 1 0 0 0 0 0 0
.........................................................................................................................................................................................................TGGCCTAGTGATACTTG................................ 17 1 1 1.00 1 0 1 0 0 0 0 0 0 0
..........................................................................................................................................................................................................GGCCTAGTGATACTGG................................ 16 1 4 1.00 4 0 4 0 0 0 0 0 0 0
.............................................................................................................................................................................................................CTAGTGATACTGGCTG............................. 16 1 2 1.00 2 0 2 0 0 0 0 0 0 0
..........................................................................................................................................................................................................GGCCTAGTGATACTTGCT.............................. 18 1 1 1.00 1 0 1 0 0 0 0 0 0 0
.........................................................................................................................................................................................................TGGCCTAGTGATACTGGATG............................. 20 2 2 1.00 2 0 2 0 0 0 0 0 0 0
..........................................................................................................................................................................................................GGCCTAGTGATACTG................................. 15 1 8 0.88 7 2 5 0 0 0 0 0 0 0
..............................................................................................................................................................................................................TAGTGATACTGGCTG............................. 15 1 4 0.75 3 0 2 0 0 0 0 1 0 0
...........................................................................................................................................................................................................GCCTAGTGATACTGGCT.............................. 17 1 2 0.50 1 0 1 0 0 0 0 0 0 0
.......................................................................AGATCCAAATTTGGCATGC................................................................................................................................................................ 19 3 4 0.50 2 1 0 1 0 0 0 0 0 0
..........................................................................................................................................................................................................GGCCTAGTGATACTGGCTG............................. 19 1 2 0.50 1 0 1 0 0 0 0 0 0 0
.........................................................................................................................................................................................................TGGCCTAGTGATACTGGACG............................. 20 3 4 0.50 2 2 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................TGGCCTAGTGATACTGCCT.............................. 19 2 2 0.50 1 0 1 0 0 0 0 0 0 0
...........................................................................................................................................................................................................GCCTAGTGATACTGG................................ 15 1 4 0.50 2 2 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................GGCCTAGTGATACTGGTTG............................. 19 2 2 0.50 1 0 1 0 0 0 0 0 0 0
.......................................................................AGATCCAAACTTGGCATGC................................................................................................................................................................ 19 3 2 0.50 1 0 0 1 0 0 0 0 0 0
............................................................................................................................................................................................................CTTAGTGATACTGGCTG............................. 17 2 4 0.50 2 0 2 0 0 0 0 0 0 0
...........................................................................................................................................................................................................GCCTAGTGATACTGGC............................... 16 1 2 0.50 1 0 1 0 0 0 0 0 0 0
.........................................................................................................................................................................................................TGGCCTAGTGATACTGTCT.............................. 19 2 2 0.50 1 0 1 0 0 0 0 0 0 0
..........................................................................................................................................................................................................GGCCTAGTGATACTGGATG............................. 19 2 2 0.50 1 0 1 0 0 0 0 0 0 0
.........................................................................................................................................................................................................TGGCCTAGTGATACTGGCA.............................. 19 2 2 0.50 1 0 1 0 0 0 0 0 0 0
.........................................................................................................................................................................................................TGGCCTAGTGATACTGGTTG............................. 20 2 2 0.50 1 0 1 0 0 0 0 0 0 0
.........................................................................................................................................................................................................TGGCCTAGTTATACT.................................. 15 1 5 0.40 2 0 1 0 0 1 0 0 0 0
.........................................................................................................................................................................................................TGGCCTAGTGATTCTGG................................ 17 2 8 0.38 3 0 2 0 0 1 0 0 0 0
.........................................................................................................................................................................................................TGGCCTAGTGATATTGGATG............................. 20 3 3 0.33 1 0 1 0 0 0 0 0 0 0
.........................................................................................................................................................................................................TGGCCTAGTGATATTGGCT.............................. 19 2 3 0.33 1 0 1 0 0 0 0 0 0 0
.........................................................................................................................................................................................................TGGCCTAGTGATTCTGGAT.............................. 19 3 9 0.33 3 0 1 0 0 1 0 1 0 0
........................................................................................................................................................................................................GTGGCCTAGTGATACT.................................. 16 1 3 0.33 1 1 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................CGGCCTAGTGATACT.................................. 15 1 3 0.33 1 0 1 0 0 0 0 0 0 0
.........................................................................................................................................................................................................TGGCCTATTCATACTGGCT.............................. 19 3 7 0.29 2 0 2 0 0 0 0 0 0 0
.......................................................................AGTTCCAAATTTGGCATGC................................................................................................................................................................ 19 3 8 0.25 2 0 0 0 2 0 0 0 0 0
.....................................................................................................................................................................................................TTCGTGGCCTAGTGATACTG................................. 20 3 5 0.20 1 0 0 0 0 1 0 0 0 0
.........................................................................................................................................................................................................TGGCCTAGTGATTCA.................................. 15 2 20 0.20 4 0 0 0 0 2 1 1 0 0
...........................................................................................................................................................................................................GCCTAGTGATTCCCGCTG............................. 18 2 5 0.20 1 0 1 0 0 0 0 0 0 0
........................................................................GCTCCAAATTTGGCATGC................................................................................................................................................................ 18 3 16 0.19 3 3 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................TGGGCTAGTGATACT.................................. 15 1 6 0.17 1 0 1 0 0 0 0 0 0 0
.......................................................................AGCTCCAAATTTGGGATGC................................................................................................................................................................ 19 3 6 0.17 1 0 0 1 0 0 0 0 0 0
.........................................................................................................................................................................................................TGGCCTAGTGATACGAGATG............................. 20 3 6 0.17 1 0 0 0 0 1 0 0 0 0
.......................................................................AGCTTCAAACTTGGAATGC................................................................................................................................................................ 19 3 7 0.14 1 0 0 0 1 0 0 0 0 0
.......................................................................AGCTGCAAAGTTGGCATGC................................................................................................................................................................ 19 3 7 0.14 1 0 0 1 0 0 0 0 0 0
............................................................................................................................................................................................................CCTAGTGATTCTGGCTG............................. 17 2 8 0.13 1 0 1 0 0 0 0 0 0 0
.....................................................................................................................................................................................................TTCGTGGCCTAGTGATACA.................................. 19 3 8 0.13 1 0 0 0 0 0 1 0 0 0
............................................................................................................................................................................................................CCTAGTGATACTGGCTA............................. 17 2 8 0.13 1 0 1 0 0 0 0 0 0 0
........................................................................GCTTCAAATTTGGAATGC................................................................................................................................................................ 18 3 20 0.10 2 0 0 1 1 0 0 0 0 0
............................................................................................................................................................................................................CCTAGTCATACTGGCTG............................. 17 2 10 0.10 1 0 1 0 0 0 0 0 0 0
..........................................................................................................................................................................................................GGCCTAGTGATTCTGGATG............................. 19 3 11 0.09 1 0 1 0 0 0 0 0 0 0
.........................................................................................................................................................................................................TGGCCTAGTGATACTGGAC.............................. 19 3 13 0.08 1 1 0 0 0 0 0 0 0 0
..........................................ATACCGAAGTAAGTTTTT.............................................................................................................................................................................................. 18 2 17 0.06 1 1 0 0 0 0 0 0 0 0
.............................................CCGAAGGAAATTTTACAA........................................................................................................................................................................................... 18 2 17 0.06 1 0 0 0 0 0 0 0 1 0
.............................................................................AAGGTGGGAATGCAAGTAT.......................................................................................................................................................... 19 3 19 0.05 1 0 0 0 0 1 0 0 0 0
..........................................................................................................................................................................................................GGCTTAGTGATACTGG................................ 16 2 20 0.05 1 0 1 0 0 0 0 0 0 0
..................................................................................................................................................................................................ATCGTGCTGGCCTAGT........................................ 16 2 20 0.05 1 0 0 0 0 1 0 0 0 0
.......................................................................................................................................CGGCTTTTGTAGGCATTTC................................................................................................ 19 3 20 0.05 1 0 0 0 1 0 0 0 0 0
............................................................................................................................................................................................................CCTAGTGATTCGCGCT.............................. 16 2 20 0.05 1 0 0 0 0 0 0 1 0 0
....................................................................................................................................................................................................CATGCTGGCCTAGTGATT.................................... 18 3 20 0.05 1 0 0 0 0 0 0 0 0 1
............................................................................................................................................................ATTCGAACGAACTATG.............................................................................. 16 2 20 0.05 1 0 1 0 0 0 0 0 0 0
.............................................................................................................................................................................................................CTGGTGATACTGGCTG............................. 16 2 20 0.05 1 0 1 0 0 0 0 0 0 0
........................................................................................................................................................................................................GTGGCCTAGTGATTCT.................................. 16 2 20 0.05 1 0 0 0 0 0 0 1 0 0
..........................................................................................................................................................................................................GGCCTAGTGATACTGGACG............................. 19 3 20 0.05 1 0 1 0 0 0 0 0 0 0
.........................................................................................................................................................................................................TTGCCTAGTTATACTGGCT.............................. 19 3 20 0.05 1 0 1 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................ACTGTCCCCTCGAGCC................. 16 2 20 0.05 1 0 1 0 0 0 0 0 0 0
........................................................................................................................................................................................................CTGGCCAAGTGACACT.................................. 16 2 20 0.05 1 0 0 0 0 0 1 0 0 0

Generated: 04/24/2015 at 10:25 AM