ID:

dsi_4594

 Coordinate:

3l:8251341-8251490 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

Flybase annnotation

intergenic

No Repeatable elements found

Sense Strand Reads

TCTTCGTGCGGAACGCCTCGACGATACACAACCCCGACTACGGATTCATGGTGAGCCAAGACATCTGTTCGAGCCCGGCGCACACATTTAATTATAATTATTTGTTTGCTTAATTCGATACTTCACGCTGGCCCCCGTCTCATGTGTCACATCCCCTCGATGGGGTTGCTTGTTCATTGCGCCGAAGGGTTTCCACTCGGCTAATGGAGGAAACTATTTTTCAATGGTATCCCAAAGTAATTAGAAAACC
**************************************************((((((...(((((.((..((.(((.((((((.(((..((((....))))..))).))........((....)).)))))))...))...)).))))).((.((((.....)))).))...))))))....((((..((...))..))))************************************************** 		Read size # Mismatch Hit Count Total Norm Total M023
head
 SRR553485
Chicharo_3 day-old ovaries
 M024
male body		 O001
Testis
 O002
Head
 SRR553487
NRT_0-2 hours eggs
 SRR553486
Makindu_3 day-old ovaries
 SRR618934
dsim w501 ovaries
 SRR553488
RT_0-2 hours eggs
 M025
embryo
.........................................................................................................................................................................................................................TTTTCAATGGTATCCCAA............... 18 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0
......................................TACGGATTCATGGTGAGCCA................................................................................................................................................................................................ 20 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0
..........................................GATTCATGGTGAGCCAAGACA........................................................................................................................................................................................... 21 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0
.............................................TCATGGTGAGCCAAGACATCTGTTCGA.................................................................................................................................................................................. 27 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
.....................CGATACACAACCCCGACTACGGAT............................................................................................................................................................................................................. 24 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................AATGGAGGAAACTATTTTTC............................ 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
...................................................................................................ATTTGTCTGCTTAATT....................................................................................................................................... 16 1 20 0.70 14 0 0 0 0 0 13 0 0 1 0
......................................................GCCAAGACCTCTGTTC.................................................................................................................................................................................... 16 1 3 0.33 1 0 1 0 0 0 0 0 0 0 0
.....GTTCGGATCGCGTCGACGAT................................................................................................................................................................................................................................. 20 3 4 0.25 1 0 0 0 0 0 0 1 0 0 0
....CGTGCGGAAGGTCTCGA..................................................................................................................................................................................................................................... 17 2 9 0.22 2 0 0 0 0 0 0 2 0 0 0
.................................................................................................................................................................................................CACTCGGCTCATGGA.......................................... 15 1 10 0.20 2 0 1 0 0 0 0 0 1 0 0
.............................................................................................................................................................................TCATTGCGCAGAAGG.............................................................. 15 1 10 0.20 2 0 0 0 0 0 1 0 0 1 0
...........................ACAACCTCAACTACGGACTC........................................................................................................................................................................................................... 20 3 9 0.11 1 0 0 0 0 0 0 0 0 0 1
................................................................................................................................................................................................CCACTCGGCTCATGG........................................... 15 1 13 0.08 1 0 0 0 0 0 0 0 1 0 0
..............................................................................................................................................................................................TTCAACTCGGCTCATGG........................................... 17 2 14 0.07 1 0 0 0 0 0 0 0 1 0 0
................................................................................................................................................................................................TCACTCGGCTCATGGAG......................................... 17 2 19 0.05 1 0 0 0 0 0 0 0 1 0 0
.....................................................................................................................................................................TTGCTTGTTCATTGA...................................................................... 15 1 20 0.05 1 0 0 0 0 0 1 0 0 0 0
........CGGAACGCCTCTAAGTTA................................................................................................................................................................................................................................ 18 3 20 0.05 1 0 0 0 0 0 0 1 0 0 0
.....................................................................................................................................................................TCGCTTGTTCATTGCACGG.................................................................. 19 3 20 0.05 1 0 0 0 0 0 1 0 0 0 0

Anti-sense strand reads

AGAAGCACGCCTTGCGGAGCTGCTATGTGTTGGGGCTGATGCCTAAGTACCACTCGGTTCTGTAGACAAGCTCGGGCCGCGTGTGTAAATTAATATTAATAAACAAACGAATTAAGCTATGAAGTGCGACCGGGGGCAGAGTACACAGTGTAGGGGAGCTACCCCAACGAACAAGTAACGCGGCTTCCCAAAGGTGAGCCGATTACCTCCTTTGATAAAAAGTTACCATAGGGTTTCATTAATCTTTTGG
**************************************************((((((...(((((.((..((.(((.((((((.(((..((((....))))..))).))........((....)).)))))))...))...)).))))).((.((((.....)))).))...))))))....((((..((...))..))))************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553486
Makindu_3 day-old ovaries
 SRR618934
dsim w501 ovaries
 SRR553487
NRT_0-2 hours eggs
 SRR553488
RT_0-2 hours eggs
 SRR553485
Chicharo_3 day-old ovaries
..........................................................................................................ACGAACTAAGCTATGAA............................................................................................................................... 17 1 1 1.00 1 1 0 0 0 0
...........................................................................................................................................................................................................TGCCTCATTTGATAAAAAGT........................... 20 2 4 0.25 1 0 1 0 0 0
.............................................................................................................................................................................AGTAACGCGGATACCCAAAC......................................................... 20 3 5 0.20 1 0 0 1 0 0
......................................................................................................................................................................................................................................GGATTTCATTAATTTTTTG. 19 2 14 0.14 2 1 0 0 0 1
.....................................................TCGGTTCTGTAGGCAAC.................................................................................................................................................................................... 17 2 12 0.08 1 1 0 0 0 0
......................................................................................................................................................................................................................AAAAAAAATTACAATAGGGTTT.............. 22 3 12 0.08 1 0 0 0 1 0
....................................................CTCGGTTCTATAGGCAA..................................................................................................................................................................................... 17 2 13 0.08 1 0 0 0 1 0

Generated: 04/24/2015 at 10:47 AM