ID:

dsi_4591

 Coordinate:

3l:10851362-10851508 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-21.6 -21.6 -21.5

Flybase annnotation

exon [3l_10851509_10851604_-]; CDS [3l_10851509_10851604_-]; exon [3l_10851262_10851361_-]; CDS [3l_10851262_10851361_-]; intron [3l_10851362_10851508_-]

No Repeatable elements found

Sense Strand Reads

##################################################---------------------------------------------------------------------------------------------------------------------------------------------------##################################################
AGCACCTGGATCACCGGGCATGTCGCTGGAACAGCGCACTGCTGATGCCGGTTTGTTTTGCTTAATTTAGATCCGCTTCATTCAATTCCAAACTCGAGTTGTTAATGTGTTGTTCTCCACTCACTCGACTTGGGAATAGAACTTTGAGAAAGTTTTTTGCACTCAATCTGATTGTAATCTTTGTGTTTATCTTGCAGAAATTATCTACAACTCTCAAAATGCACACCAGCAACAGCAGCAGCCACAG
**************************************************..................((((.(((................(((((((((.....(((........))).....)))))))))...((((((((...))))))))(((((.(((...))).))))).....)))...)))).....************************************************** 		Read size # Mismatch Hit Count Total Norm Total M025
embryo
 GSM343915
embryo
 M024
male body		 SRR553487
NRT_0-2 hours eggs
 SRR553485
Chicharo_3 day-old ovaries
 SRR553486
Makindu_3 day-old ovaries
 SRR618934
dsim w501 ovaries
 SRR553488
RT_0-2 hours eggs
.......................................................................................................................................................GTTTTTTGCACTCAATCTGATTGTA....................................................................... 25 0 1 1.00 1 1 0 0 0 0 0 0 0
...............................................................................................................................................................................AATCTTTGTGTTTATCTTG..................................................... 19 0 1 1.00 1 0 1 0 0 0 0 0 0
...............................................................................................................................ACTTGGGAATAGAACTTTGAGAA................................................................................................. 23 0 1 1.00 1 1 0 0 0 0 0 0 0
.................GCATGTCGCTGGAACAGCGCACTG.............................................................................................................................................................................................................. 24 0 1 1.00 1 0 0 1 0 0 0 0 0
.....................................................................................................................................GAAAAGAACTTTGAGAGAG............................................................................................... 19 2 4 0.50 2 0 0 0 1 0 1 0 0
...........................................GATGACGGTTTGTGTTGCT......................................................................................................................................................................................... 19 2 2 0.50 1 0 1 0 0 0 0 0 0
...................ATGTCGTTGGAACAGC.................................................................................................................................................................................................................... 16 1 4 0.25 1 0 0 0 0 1 0 0 0
......................................................................................................................ACTCACTCAACCTGGGAA............................................................................................................... 18 2 6 0.17 1 0 0 0 0 0 0 1 0
..............................................................................................CGAGCTGTTACTGTGCTGTT..................................................................................................................................... 20 3 7 0.14 1 0 0 0 0 0 0 0 1
....CCTGGATCACCCGGTAAG................................................................................................................................................................................................................................. 18 3 20 0.05 1 0 0 0 1 0 0 0 0

Anti-sense strand reads

TCGTGGACCTAGTGGCCCGTACAGCGACCTTGTCGCGTGACGACTACGGCCAAACAAAACGAATTAAATCTAGGCGAAGTAAGTTAAGGTTTGAGCTCAACAATTACACAACAAGAGGTGAGTGAGCTGAACCCTTATCTTGAAACTCTTTCAAAAAACGTGAGTTAGACTAACATTAGAAACACAAATAGAACGTCTTTAATAGATGTTGAGAGTTTTACGTGTGGTCGTTGTCGTCGTCGGTGTC
**************************************************..................((((.(((................(((((((((.....(((........))).....)))))))))...((((((((...))))))))(((((.(((...))).))))).....)))...)))).....************************************************** 		Read size # Mismatch Hit Count Total Norm Total M024
male body		 M023
head
 M025
embryo
 M053
female body
 GSM343915
embryo
 SRR553487
NRT_0-2 hours eggs
 O001
Testis
 SRR1275487
Male larvae		 SRR902009
testis
 SRR553488
RT_0-2 hours eggs
 SRR553485
Chicharo_3 day-old ovaries
 SRR1275483
Male prepupae		 O002
Head
 SRR618934
dsim w501 ovaries
 SRR553486
Makindu_3 day-old ovaries
 SRR1275485
Male prepupae
....................................................................TCGAGGCGAAGTAACTTA................................................................................................................................................................. 18 2 5 643.20 3216 2003 992 175 18 6 5 2 6 0 2 1 2 2 0 1 1
....................................................................TCTAGGCGAAGTAACTTA................................................................................................................................................................. 18 1 1 4.00 4 3 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................AGGCGAAGTAACTTA................................................................................................................................................................. 15 1 20 1.20 24 0 0 0 0 0 7 0 0 0 9 5 0 0 1 2 0
...................................................................ATCTAGGCGAAGTAAGTTAAG............................................................................................................................................................... 21 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0
.CGTGGACCTAGTGGCCCGT................................................................................................................................................................................................................................... 19 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................GTTGAGAGTTTTACGGGTGT.................... 20 2 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................TTGTGGAGAGTTTTACGTGTGT.................... 22 3 2 0.50 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
....................................................................TCGAGGCGAAGTAACTTAA................................................................................................................................................................ 19 2 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................TCCAGGCGAAGTAACTTA................................................................................................................................................................. 18 2 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................TCGAGGCGAAGTAACTTAC................................................................................................................................................................ 19 3 20 0.35 7 5 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................TCGAGGCGAAGTAATTTA................................................................................................................................................................. 18 2 12 0.25 3 1 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................CGTGAGCTAGACTAACAC....................................................................... 18 2 4 0.25 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................TCTAGGCGAAGTAACTTAT................................................................................................................................................................ 19 2 4 0.25 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................GTGTCGAGAGTTTTACGTGTGT.................... 22 3 4 0.25 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................ATGTTGGGAGTTATACGTGA...................... 20 3 5 0.20 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0
..............................................................ATTAAATGTCGGCGAAGT....................................................................................................................................................................... 18 2 11 0.18 2 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0
..................................................................................GTTAAGGTTTCAGTTCAAAAAT............................................................................................................................................... 22 3 6 0.17 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
....................................................................TCGAGGCGAAGTAACTT.................................................................................................................................................................. 17 2 20 0.15 3 0 0 0 0 0 2 0 0 0 0 0 1 0 0 0 0
.............................................................................................................................................................................................AGAACTTCTGTATTAGATGT...................................... 20 3 10 0.10 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0
.................................................................TAATCGAGGCGAAGTAACTT.................................................................................................................................................................. 20 3 11 0.09 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0
.................................................................................................................AGAAGTGAGTGAGCT....................................................................................................................... 15 1 13 0.08 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
.................................................................AGGTCTAGGCGAAGTAACTT.................................................................................................................................................................. 20 3 15 0.07 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................TCAAGGCGAAGTAACTTA................................................................................................................................................................. 18 2 20 0.05 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................ATGTTGGGAGTCATACGT........................ 18 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0
................................................................................................................................................................................................................................TGGTCGTTGTCGTCGT....... 16 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0
.............................................................................................................................................................................................................ATGTTGGGAGTTATAC.......................... 16 2 20 0.05 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0
..................TTACTGCGACCTTGTC..................................................................................................................................................................................................................... 16 2 20 0.05 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
....GCAACTCGTGGCCCGTAC................................................................................................................................................................................................................................. 18 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 3l:10851312-10851558 - dsi_4591 AGCACCTGGATCACCGGGCATGTCGCTGGAACAGCGCACTGCTGATGCCGGTTTG---------------------------TTTTGCTTAATTTAGATCCGCTTCATTCAATTCCAA--------------------------------ACTC--GAG-------------------------TTGTTAATGTGTTG-----------------------------------------------------------------------------------------------------------TTC----TCCACTCACTCGACTTGGGAATAGAACTTTGAGAAAGTTTTTTGCACTCAATCTGATTGTAAT---CTTT---------------------------------------------------------------------------------------------------GTGTTTA------TCTTGCAGAAATTATCTACAACTCTCAAAATGC-ACACCAGCAACAG---CAG---------CAGC---CACAG
droSec2 scaffold_0:3330993-3331239 - AGCACCTGGATCACCGGGCATTTCGCTGGAACAGCGCACTGCTGATGCCGGTTTG---------------------------TTTTGCTTAATTTAAATCCGTTTCATTCAATTCCAA--------------------------------ACTG--GAG-------------------------TTGTTAATGTATTG-----------------------------------------------------------------------------------------------------------TTC----TTCACTCACTCGACTTGGGAATAGAACTTTGAGAAAGTTTTCTGCACTCAATCTGATTGTAAT---CTTT---------------------------------------------------------------------------------------------------GTGTTTA------TCTTGCAGAAATTATCTACAACTCTCAAAATGC-ACACCAGCAACAG---CAG---------CACC---AACAG
dm3 chr3L:11108631-11108866 - AGCACCTGGATCACCGGGCATGTCGCTGGAACAGCGAGCTGCTGATCCCGGTATG---------------------------TTTTGCTCAATTTAAATCCGTTTCATTCAATTCCAA--------------------------------AATC--GAG-------------------------TTGTTAAAGTATTG-----------------------------------------------------------------------------------------------------------TTC----TCCAAACACTCGACTTGGGAATAGAACTTTGAGAAAGTCA-----------TCTGATTGTAAT---CTTT---------------------------------------------------------------------------------------------------GGGATTA------TCTTGCAGAAATTATTTACAACTCACAAAATGC-ACACCAGCAACAG---CAG---------CAAC---AACAG
droEre2 scaffold_4784:11114992-11115226 - AGCACCTGGATCACCGGGAATGTCGCTGGAACAGCGCGCTGCTGATGCCGGTTTG---------------------------TTTTGCTTAATTTGAATCCGTTTAATTCAATTCAAA--------------------------------TCTC--GAG-------------------------TGGT--------TG-----------------------------------------------------------------------------------------------------------TAC----GCCATTCACTCGTTTAAGGAATAGAACTTTGAAAATGTCTTCTG-AGTCAATCAGATTGTAAT---CTTT---------------------------------------------------------------------------------------------------GTGATTA------TCTTGCAGAAATTATCTACAACTCTCAAAATGC-ACACCAGCAACAG---CAG---------CACC---AA---
droYak3 3L:11136972-11137217 - dya_1499 AGCACCTGGATCACCGGGAATGTCGCTGGAACAGCGCGCTGCTGATGCCGGTTTG---------------------------TTTTGCTTAATTTTATTCTGTTTAAGTCAATTCCAA--------------------------------ACTC--GAG-------------------------TTATTAAAGTATTG-----------------------------------------------------------------------------------------------------------CTT----GCCATTAACTCGTTTTAGCAATTGAACTTTGCAAATGTCTTCGG-ACTCAATCAGATTGTAAT---AAGT---------------------------------------------------------------------------------------------------GTAATTA------TCTTGCAGAAATTATCTACAACTCTCAAAATGC-ACACCAGCAACAG---CAG---------CACC---AACAG
droEug1 scf7180000409711:2984870-2985083 - TGCACCCGGATCACCGGGAATGTCGCTGGAACAGCGCGCCGCTGACGCCGGTTTG---------------------------TTTTTATAGATTTT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TG------------------------------------------------------------------------------------TTGTTTTCTTAATTTTTCGATTATAATATTAACGTTATTGTTTTGGAATTGAAGTACATTACTAGAATTAAAA------TTATTATTATTA------TTTTGCAGAAATCATTTACAACTCTCAGAATGC-ACACCAGCAGCAA---CAG---------CACC---AACCG
droBia1 scf7180000302193:507785-507955 + TGCTCCGGGGTCTCCGGGGATGTCCCTAGAACAGCGAGCCGCTGATGCTGGTAAG---------TTG----------------------------------------------------------------------------------------------TTTCCTTATACACATTGATGTCA------ACAAATGTATCAAGGCATT-------------------------------------------------------------------------------------------------------------------------------------------------------------------AA-------------------------------------------------------------------------------------------------------------TCTCTTTCAAACCGTGCAGAAATAATCTACAACTCTCAAAATGC-ACACCAGCAACAG---CAA---------CACC---AGCAG
droTak1 scf7180000415185:301318-301540 - GGCTCCCGGATCACCGGGGATGTCGCTGGAACAGCGAGCCGCTGATGCCGGTAAG---------AGGC------------------------------------------------------------------------------------------------------------------------------------------ATTAGGATAAAAGCAAAGCTTTATTTCTTCTTTAGAGAGATTTACGAGTTTATTCAATTAGTTTATACACTACATTTAACTGCATTAGTTTGACCAAC-----------------------------------------------------------------------------T---------------------------------------------------------------------------------------------------GAAATTA------TTTTACAGAAATAATCTACAACTCTCAAAATGC-ACACCAGCAACAG---CAG---------CACC---AACAG
droEle1 scf7180000490564:2011064-2011144 - T--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGTAAT---CTTTCTG---------------------------------------------------------------------------------------GT-------TGCCTTG------TTTTGCAGAAATCATCTACAACTCTCAAAATGC-ACACCAGCAACAG---CAG---------CACC---AACAG
droRho1 scf7180000780024:283025-283098 + T--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTAAT---CTTTATA---------------------------------------------------------------------------------------A---T----TTATTTA------TTTTGCAGAAATCATCTACAACTCTCAAAATGC-ACACCAGCAACAG---CAG---------CA----------
droFic1 scf7180000454107:459098-459163 - TGA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T---ATTT---------------------------------------------------------------------------------------------------TTTTCAA------TTTTACAGAAATCATCTACAACTCTCAAAATGC-ACACCAGCAACAG---CAG---------CA----------
droKik1 scf7180000302686:338343-338502 + CGCTCCTGGCTCGCCGGGAATGTCGCTGGAACAGCGCGCAGCAGATCCTGGTAACTATACTTTTAAA---------------------------------------------------------------------------------------GACAGCCAAGCT-A----------------------------------------------------------------------------------------------------------------------------------------------------------------AGCAA------------------------------------TTTAAT---CAAT----------------------------------------------------------------------------------------------------AAAATA------CCTTGCAGAAA---TCTACAACTCTCAAAATGC-ACACCAGCAACAA---CAACA------ACAACAACAGC--
droAna3 scaffold_13337:5400015-5400179 - TGCCCCTGGATCACCGGGATTGTCGCTGGAACAGCGTGCCAATGATGCGGGTAAG---------A----------------------------------------------------------------------------------------------CAACTCG-TATATTATTCAAGTAATT-----ACAAAAATATTA----------------------------------------------------------------------------------------------------ACTGAA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACTTC------TTCAGCAGAAATCATCTACAACTCCCAGAATGC-ACACCAGCAGCAG---CAGCA------GCAGA---GCCAG
droBip1 scf7180000396371:725352-725525 - TGCCCCTGGATCACCGGGATTGTCGCTGGAACAGCGTGCCAATGATGCGGGTAAC---------TAA---------------------------------------------------------------------------------------GTCACTAAAAAT-TATATAATTTAATGGAAA----------AATATAA----------------------------------------------------------------------------------------------------A-----------------------------------------GA-------------------------AAAT---ATAT---------------------------------------------------------------------------------------------------ATATTTT------TTCAGCAGAAATCATCTACAACTCTCAGAATGC-ACACCAACAGCAGAGCCAG---------CAAC---CGCAA
dp5 XR_group6:10639938-10640121 - AGCACCTGGATCGCCAGGCATGTCGATGGAACAGCGCGCTGCTGATGCCGGTAAG---------AGC---------------------------------------------------------------------------------------GAGAGCCATTTT-TAGACTAATCAATGGATTGGCCAATGCATGTTTCA----------------------------------------------------------------------------------------------------ACTGATGTCCG------------------------------------------------------------------------------------CCGTTCT--------------------------------------------------------------------GT-------GCTTTTC------TATTCCAGAAATCATCTATAATTCTCAGAATGC-ACACCAGCAACAG---CAG---------CAC---------
droPer2 scaffold_20:551029-551224 - AGCACCTGGATCGCCAGGCATGTCGATGGAACAGCGCGCTGCTGATGCCGGTAAG---------AGC---------------------------------------------------------------------------------------GAGAGCCATTTT-TAGACTAATCAATGGATTGGCCAATGCATGTTTCA----------------------------------------------------------------------------------------------------ACTGATGTCCG------------------------------------------------------------------------------------CCGTTCT--------------------------------------------------------------------GT-------GCTTTTC------TATTCCAGAAATCATCTATAATTCTCAGAATGC-ACACCAGCAACAG---CAGCA---CCAACAAC---AACAG
droWil2 scf2_1100000004768:2246198-2246467 + GGCACCTGGATCACCAGGCATGTCGCTAGAGCAGCGTGCGGCTGATGCTGGTAAG---------AAGATGGAATCATTCACTTGTTGCTTAAAC---------------CTATACTAAAAGATTGTGTGAAGATTCATATACTATCGATAGCTCAAGGG-------------------------CTGTT-----ATCA-----------------------------------------------------------------------------------------------------------TTC----ATCATTCACACATTTA---------------------------------------------T----ATGT------TAATTTTTAAAAC-----------------------------------------------------------------TAATATGTGTTTATTGTAATTT------CTTTGTAGAAATCATCTACAACTCACAGAATGC-ACACCAGCAGCAA---CAGCAACATCAGCAGC---AGCAA
droVir3 scaffold_13049:23161297-23161352 - ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGCAGAAATCATCTACAATTCTCAAAATGC-ACACCAGCAACAG---CAG---------CAGC---AGCAG
droMoj3 scaffold_6540:33521921-33522010 - GC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCTCGCTCTGTTTGTCT----TTGT------GTGTTTCTGTGGC-----------------------------------------------------------------AAATTTA---------------------------------TATTTATTGGCTTCATTATGCTACAGCAGCAGCAG---CAG---------CAGC---CGCAG
droGri2 scaffold_15110:18417320-18417482 - GGCACCTGGCTCACCCGGCATGTCTCTCGAGCAGCGCGCCGCCGATGCTGGTGAG---------CAGC------------------------------------------------------------------------------------------------------------------------------------------AAATAGATAAT--------------------------------------------------------------------------------------------------------------------------------------------------------TATTATTGGGTTTTTATTT------------------------------------------------------------------------------------ACATTT---TATCAAA------ACTTGCAGAAATTATCTACAACTCTCAAAATGC-ACACCAGCACCAACAGCAG---------CAGC---AACAG

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
AGCACCTGGATCACCGGGCATGTCGCTGGAACAGCGCACTGCTGATGCCGGTTTG---------------------------TTTTGCTTAATTTAGATCCGCTTCATTCAATTCCAA--------------------------------ACTC--GAG-------------------------TTGTTAATGTGTTG-----------------------------------------------------------------------------------------------------------TTC----TCCACTCACTCGACTTGGGAATAGAACTTTGAGAAAGTTTTTTGCACTCAATCTGATTGTAAT---CTTT---------------------------------------------------------------------------------------------------GTGTTTA------TCTTGCAGAAATTATCTACAACTCTCAAAATGC-ACACCAGCAACAG---CAG---------CAGC---CACAGSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
............................................................................................................................................................................................................................................................................................................................................................GTTTTTTGCACTCAATCTGATTGTA...................................................................................................................................................................................................2511.00100100000000000000
....................................................................................................................................................................................................................................................................................................................................................................................AAT---CTTT---------------------------------------------------------------------------------------------------GTGTTTA------TCTTG.....................................................................1911.00100000000000100000
....................................................................................................................................................................................................................................................................................................................................ACTTGGGAATAGAACTTTGAGAA.............................................................................................................................................................................................................................2311.00100100000000000000
.................GCATGTCGCTGGAACAGCGCACTG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00101000000000000000
droSec2
AGCACCTGGATCACCGGGCATTTCGCTGGAACAGCGCACTGCTGATGCCGGTTTG---------------------------TTTTGCTTAATTTAAATCCGTTTCATTCAATTCCAA--------------------------------ACTG--GAG-------------------------TTGTTAATGTATTG-----------------------------------------------------------------------------------------------------------TTC----TTCACTCACTCGACTTGGGAATAGAACTTTGAGAAAGTTTTCTGCACTCAATCTGATTGTAAT---CTTT---------------------------------------------------------------------------------------------------GTGTTTA------TCTTGCAGAAATTATCTACAACTCTCAAAATGC-ACACCAGCAACAG---CAG---------CACC---AACAGSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
..CACCTGGATCACCGGGCATTTCGCTGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010010
.......................CGCTGGAACAGCGCACTGCTGATGC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010100
................GGCATTTCGCTGGAACAGCGCA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010100
dm3
AGCACCTGGATCACCGGGCATGTCGCTGGAACAGCGAGCTGCTGATCCCGGTATG---------------------------TTTTGCTCAATTTAAATCCGTTTCATTCAATTCCAA--------------------------------AATC--GAG-------------------------TTGTTAAAGTATTG-----------------------------------------------------------------------------------------------------------TTC----TCCAAACACTCGACTTGGGAATAGAACTTTGAGAAAGTCA-----------TCTGATTGTAAT---CTTT---------------------------------------------------------------------------------------------------GGGATTA------TCTTGCAGAAATTATTTACAACTCACAAAATGC-ACACCAGCAACAG---CAG---------CAAC---AACAGSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
....................TGTCGCTGGAACAGCGAGCTGCTGAA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................26119.001900000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000019
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTATTTACAACTCACAAAATGC-........................................2218.0080000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000080000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........TCACCGGGCATGTCGCTGGAACAGCGAGC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2914.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000020000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................TCGCTGGAACAGCGAGCTGCTG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2213.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..CACCTGGATCACCGGGCATGTCGCTG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2613.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........TCACCGGGCATGTCGCTGGAACAGCGA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2712.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000
.................................GCGAGCTGCTGATCCCGGTAT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................A-----------TCTGATTGTAAT---CTTT---------------------------------------------------------------------------------------------------GGGA...................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........TCACCGGGCATGTCGCTGGA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2012.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACTCACAAAATGC-ACACCAGCAACAG---C.......................2812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................AAT---CTTT---------------------------------------------------------------------------------------------------GGGATTA------TCTTGCAG..................................................................2212.0020000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000
.................................GCGAGCTGCTGATCCCGAA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1931.6750000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........CACCGGGCATGTCGCTGGAACAGCGA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..CACCTGGATCACCGGGCATGTCGCT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........CACCGGGCATGTCGCTGGAACAGCGT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATGC-ACACCAGCAACAG---CA......................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCACAAAATGC-ACACCAGCA...............................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........ATCACCGGGCATGTCGCTGGAACAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTACAACTCACAAAATGC-ACACC...................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....CCTGGATCACCGGGCATGTCGCTGGAACA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGC-ACACCAGCAACAG---CAG---------CAAC---.....2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................CTTGGGAATAGAACTTTGAG...............................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............CGGGCATGTCGCTGGAACAGC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAATGC-ACACCAGCAACAG---CAG---------CAAC---.....2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGC-ACACCAGCAACAG---CAG---------C...........2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000
.................................................................................................................TCCAA--------------------------------AATC--GAG-------------------------TTGTTAAAG.......................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................GTAAT---CTTT---------------------------------------------------------------------------------------------------GGGATTA------TCTTGCA...................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...ACCTGGATCACCGGGCATGTCGCTGGA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATTATTTACAACTCACAA..............................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................GCTGATCCCGGTATG---------------------------TTTTGC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGC-ACACCAGCAACAG---CAG---------CA..........2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
....................................................................................................................................................................................................................................................................................................................................................................................AAT---CTTT---------------------------------------------------------------------------------------------------GGGATTA------TCTTGCAT..................................................................2211.0010000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......TGGATCACCGGGCATGTCGCT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........ATCACCGGGCATGTCGCTGGAACA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........GATCACCGGGCATGTCGC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................AT---CTTT---------------------------------------------------------------------------------------------------GGGATTA------TCTTGCAG..................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
......TGGATCACCGGGCATGTCGCTGGA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................CTTT---------------------------------------------------------------------------------------------------GGGATTA------TCTTGCAG..................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................GGCATGTCGCTGGAACAGCGA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................AT---CTTT---------------------------------------------------------------------------------------------------GGGATTA------TCTTG.....................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000
..........TCACCGGGCATGTCGCTGGAACAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............GGGCATGTCGCTGGAACAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACAAAATGC-ACACCAGCAACAG---CAG---------C...........2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................ATTG-----------------------------------------------------------------------------------------------------------TTC----TCCAAACACTCGAC..................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACAAAATGC-ACACCAGCAACAG---CAG---------............2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................TTTCATTCAATTCCAA--------------------------------AATC--G...........................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACACCAGCAACAG---CAG---------CA..........1830.6720000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCAGCAACAG---CAG---------CAAC---AACA.2160.5030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACCAGCAACAG---CAG---------CAAC---AAC..2260.3320000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCAGCAACAG---CAG---------CAAC---AACA.2260.1710000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCAGCAACAG---CAG---------CAAC---AAC..2160.1710000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000
droEre2
AGCACCTGGATCACCGGGAATGTCGCTGGAACAGCGCGCTGCTGATGCCGGTTTG---------------------------TTTTGCTTAATTTGAATCCGTTTAATTCAATTCAAA--------------------------------TCTC--GAG-------------------------TGGT--------TG-----------------------------------------------------------------------------------------------------------TAC----GCCATTCACTCGTTTAAGGAATAGAACTTTGAAAATGTCTTCTG-AGTCAATCAGATTGTAAT---CTTT---------------------------------------------------------------------------------------------------GTGATTA------TCTTGCAGAAATTATCTACAACTCTCAAAATGC-ACACCAGCAACAG---CAG---------CACC---AA---SizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
........GATCACCGGGAATGTCGCT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000100
...............GGGAATGTCGCTGGAACAGCGCGCTG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0011000000
........GATCACCGGGAATGTCGCTGGAAC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000010
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATCTACAACTCTCAAAATGC-ACACC...................................2611.0011000000
.......................CGCTGGAACAGCGCGCTGCTGA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000100
...........................GGAACAGCGCGCTGCTGA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0011000000
droYak3
AGCACCTGGATCACCGGGAATGTCGCTGGAACAGCGCGCTGCTGATGCCGGTTTG---------------------------TTTTGCTTAATTTTATTCTGTTTAAGTCAATTCCAA--------------------------------ACTC--GAG-------------------------TTATTAAAGTATTG-----------------------------------------------------------------------------------------------------------CTT----GCCATTAACTCGTTTTAGCAATTGAACTTTGCAAATGTCTTCGG-ACTCAATCAGATTGTAAT---AAGT---------------------------------------------------------------------------------------------------GTAATTA------TCTTGCAGAAATTATCTACAACTCTCAAAATGC-ACACCAGCAACAG---CAG---------CACC---AACAGSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
...ACCTGGATCACCGGGAATGTCGCT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00100100000000
...ACCTGGATCACCGGGAATGTC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100100000000
........GATCACCGGGAATGTCGCTG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00101000000000
........................GCTGGAACAGCGCGCTGCT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100000100000
........GATCACCGGGAATGTCGCT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100000100000
droEug1
TGCACCCGGATCACCGGGAATGTCGCTGGAACAGCGCGCCGCTGACGCCGGTTTG---------------------------TTTTTATAGATTTT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TG------------------------------------------------------------------------------------TTGTTTTCTTAATTTTTCGATTATAATATTAACGTTATTGTTTTGGAATTGAAGTACATTACTAGAATTAAAA------TTATTATTATTA------TTTTGCAGAAATCATTTACAACTCTCAGAATGC-ACACCAGCAGCAA---CAG---------CACC---AACCGSizeHit CountTotal NormTotal
No Reads
droBia1
TGCTCCGGGGTCTCCGGGGATGTCCCTAGAACAGCGAGCCGCTGATGCTGGTAAG---------TTG----------------------------------------------------------------------------------------------TTTCCTTATACACATTGATGTCA------ACAAATGTATCAAGGCATT-------------------------------------------------------------------------------------------------------------------------------------------------------------------AA-------------------------------------------------------------------------------------------------------------TCTCTTTCAAACCGTGCAGAAATAATCTACAACTCTCAAAATGC-ACACCAGCAACAG---CAA---------CACC---AGCAGSizeHit CountTotal NormTotal
No Reads
droTak1
GGCTCCCGGATCACCGGGGATGTCGCTGGAACAGCGAGCCGCTGATGCCGGTAAG---------AGGC------------------------------------------------------------------------------------------------------------------------------------------ATTAGGATAAAAGCAAAGCTTTATTTCTTCTTTAGAGAGATTTACGAGTTTATTCAATTAGTTTATACACTACATTTAACTGCATTAGTTTGACCAAC-----------------------------------------------------------------------------T---------------------------------------------------------------------------------------------------GAAATTA------TTTTACAGAAATAATCTACAACTCTCAAAATGC-ACACCAGCAACAG---CAG---------CACC---AACAGSizeHit CountTotal NormTotal
No Reads
droEle1
T--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGTAAT---CTTTCTG---------------------------------------------------------------------------------------GT-------TGCCTTG------TTTTGCAGAAATCATCTACAACTCTCAAAATGC-ACACCAGCAACAG---CAG---------CACC---AACAGSizeHit CountTotal NormTotal
No Reads
droRho1
T--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTAAT---CTTTATA---------------------------------------------------------------------------------------A---T----TTATTTA------TTTTGCAGAAATCATCTACAACTCTCAAAATGC-ACACCAGCAACAG---CAG---------CA----------SizeHit CountTotal NormTotal
No Reads
droFic1
TGA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T---ATTT---------------------------------------------------------------------------------------------------TTTTCAA------TTTTACAGAAATCATCTACAACTCTCAAAATGC-ACACCAGCAACAG---CAG---------CA----------SizeHit CountTotal NormTotal
No Reads
droKik1
CGCTCCTGGCTCGCCGGGAATGTCGCTGGAACAGCGCGCAGCAGATCCTGGTAACTATACTTTTAAA---------------------------------------------------------------------------------------GACAGCCAAGCT-A----------------------------------------------------------------------------------------------------------------------------------------------------------------AGCAA------------------------------------TTTAAT---CAAT----------------------------------------------------------------------------------------------------AAAATA------CCTTGCAGAAA---TCTACAACTCTCAAAATGC-ACACCAGCAACAA---CAACA------ACAACAACAGC--SizeHit CountTotal NormTotal
No Reads
droAna3
TGCCCCTGGATCACCGGGATTGTCGCTGGAACAGCGTGCCAATGATGCGGGTAAG---------A----------------------------------------------------------------------------------------------CAACTCG-TATATTATTCAAGTAATT-----ACAAAAATATTA----------------------------------------------------------------------------------------------------ACTGAA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACTTC------TTCAGCAGAAATCATCTACAACTCCCAGAATGC-ACACCAGCAGCAG---CAGCA------GCAGA---GCCAGSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
.................GATTGTCGCTGGAACAGCGTGCCA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001000010
................................AGCGTGCCAATGATGCGG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001000001
..................ATTGTCGCTGGAACAGCGTGC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000001
.....CTGGATCACCGGGATTGTCGCTGGAAC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.001000001
...........CACCGGGATTGTCGCTGGAACAGCGT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001000001
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTACAACTCCCAGAATGC-ACACC...................................2311.001100000
........GATCACCGGGATTGTCGCTGGAA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001000001
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTCCCAGAATGC-ACACCAGC................................2111.001100000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACACCAGCAGCAG---CAGCA------GC...........20200.051001000
droBip1
TGCCCCTGGATCACCGGGATTGTCGCTGGAACAGCGTGCCAATGATGCGGGTAAC---------TAA---------------------------------------------------------------------------------------GTCACTAAAAAT-TATATAATTTAATGGAAA----------AATATAA----------------------------------------------------------------------------------------------------A-----------------------------------------GA-------------------------AAAT---ATAT---------------------------------------------------------------------------------------------------ATATTTT------TTCAGCAGAAATCATCTACAACTCTCAGAATGC-ACACCAACAGCAGAGCCAG---------CAAC---CGCAASizeHit CountTotal NormTotal
No Reads
dp5
AGCACCTGGATCGCCAGGCATGTCGATGGAACAGCGCGCTGCTGATGCCGGTAAG---------AGC---------------------------------------------------------------------------------------GAGAGCCATTTT-TAGACTAATCAATGGATTGGCCAATGCATGTTTCA----------------------------------------------------------------------------------------------------ACTGATGTCCG------------------------------------------------------------------------------------CCGTTCT--------------------------------------------------------------------GT-------GCTTTTC------TATTCCAGAAATCATCTATAATTCTCAGAATGC-ACACCAGCAACAG---CAG---------CAC---------SizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
............................GAACAGCGCGCTGCTGAT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010100000000
.........ATCGCCAGGCATGTCGATGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010100000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCTCAGAATGC-ACACCAGCAACA............................2411.0010100000000
..............CAGGCATGTCGATGGAAC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010100000000
......................TCGATGGAACAGCGCGCTGCTGATGCC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010001000000
.GCACCTGGATCGCCAGGCATGT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010100000000
...................ATGTCGATGGAACAGCGCGC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010100000000
droPer2
AGCACCTGGATCGCCAGGCATGTCGATGGAACAGCGCGCTGCTGATGCCGGTAAG---------AGC---------------------------------------------------------------------------------------GAGAGCCATTTT-TAGACTAATCAATGGATTGGCCAATGCATGTTTCA----------------------------------------------------------------------------------------------------ACTGATGTCCG------------------------------------------------------------------------------------CCGTTCT--------------------------------------------------------------------GT-------GCTTTTC------TATTCCAGAAATCATCTATAATTCTCAGAATGC-ACACCAGCAACAG---CAGCA---CCAACAAC---AACAGSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
..................CATGTCGATGGAACAGCGCGCTGCT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001100000
.............CCAGGCATGTCGATGGAACA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001001000
droWil2
GGCACCTGGATCACCAGGCATGTCGCTAGAGCAGCGTGCGGCTGATGCTGGTAAG---------AAGATGGAATCATTCACTTGTTGCTTAAAC---------------CTATACTAAAAGATTGTGTGAAGATTCATATACTATCGATAGCTCAAGGG-------------------------CTGTT-----ATCA-----------------------------------------------------------------------------------------------------------TTC----ATCATTCACACATTTA---------------------------------------------T----ATGT------TAATTTTTAAAAC-----------------------------------------------------------------TAATATGTGTTTATTGTAATTT------CTTTGTAGAAATCATCTACAACTCACAGAATGC-ACACCAGCAGCAA---CAGCAACATCAGCAGC---AGCAASizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTACAACTCACAGAATGC-ACACCAGC................................2612.00220000
...................ATGTCGCTAGAGCAGCGTGCGGC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00100010
.................................................................................................................ACTAAAAGATTGTGTGAAGATTCATAT............................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00100001
.........ATCACCAGGCATGTCGCTAGA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100010
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACAACTCACAGAATGC-ACACC...................................2211.00101000
............ACCAGGCATGTCGCTAGAGCAGCGG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00100010
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACACCAGCAGCAA---CAGCAAC.................20140.07100010
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCAGCAA---CAGCAACATCA.............20200.05101000
droVir3
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGCAGAAATCATCTACAATTCTCAAAATGC-ACACCAGCAACAG---CAG---------CAGC---AGCAGSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
No Reads
droMoj3
GC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCTCGCTCTGTTTGTCT----TTGT------GTGTTTCTGTGGC-----------------------------------------------------------------AAATTTA---------------------------------TATTTATTGGCTTCATTATGCTACAGCAGCAGCAG---CAG---------CAGC---CGCAGSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
No Reads
droGri2
GGCACCTGGCTCACCCGGCATGTCTCTCGAGCAGCGCGCCGCCGATGCTGGTGAG---------CAGC------------------------------------------------------------------------------------------------------------------------------------------AAATAGATAAT--------------------------------------------------------------------------------------------------------------------------------------------------------TATTATTGGGTTTTTATTT------------------------------------------------------------------------------------ACATTT---TATCAAA------ACTTGCAGAAATTATCTACAACTCTCAAAATGC-ACACCAGCACCAACAGCAG---------CAGC---AACAGSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
.............................AGCAGCGCGCCGCCGATGCT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00110

Generated: 05/17/2015 at 03:38 PM