ID:

dsi_4585

 Coordinate:

3r:10712410-10712559 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

Flybase annnotation

intergenic

No Repeatable elements found

Sense Strand Reads

GTTTCAACGAGAGTGGGCGGGGCCAATGGTGGTAGGTTGGAATTTCAGTTGACCCCTGCGGCGCACAGGACATAACACATTCGCACCTCGGCACAATGTCACGCCCACAATTTGCATGCAAAAATGAAATAAATGCGGATGGCCGGCCAAATGGCTTAATATTGTTAACGCTATCACCCTGCTCCTCTGCTGATTTCCAGGACGGCCTTCACACGCCGCAGATTAGCCTGAGTTACACCCACGAGGGCAA
**************************************************........(((((...((((.......((((((((....(((..........)))....((((.(((......)))))))...))))))))((.((....((((((((((...))))).)))))...)).)))))).)))))........************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553485
Chicharo_3 day-old ovaries
 GSM343915
embryo
 SRR553487
NRT_0-2 hours eggs
 SRR553486
Makindu_3 day-old ovaries
 SRR553488
RT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
 M025
embryo
.........................AAGGTGGTAGGCTGGAAT............................................................................................................................................................................................................... 18 2 2 1.50 3 2 0 1 0 0 0 0
......................CCAATGGTGGTAGGTTGGA................................................................................................................................................................................................................. 19 0 1 1.00 1 0 1 0 0 0 0 0
............................GTGGTAGGCTGGAAT............................................................................................................................................................................................................... 15 1 10 0.40 4 1 0 0 1 2 0 0
.......CGAGAGTGGACGGGG.................................................................................................................................................................................................................................... 15 1 4 0.25 1 0 0 1 0 0 0 0
.......CGAGAGTGGACGGGACC.................................................................................................................................................................................................................................. 17 2 5 0.20 1 0 0 1 0 0 0 0
........................ATTGGTCGTAGGTTCGAAT............................................................................................................................................................................................................... 19 3 20 0.15 3 0 0 0 2 0 0 1
............................................TCAGTTGACCTCTGCG.............................................................................................................................................................................................. 16 1 9 0.11 1 0 0 0 0 0 1 0
..........................AGGTGGTAGGCTGGAAT............................................................................................................................................................................................................... 17 2 9 0.11 1 0 0 0 1 0 0 0
.............................TGGTAGGCTGGAATCTTAG.......................................................................................................................................................................................................... 19 3 11 0.09 1 1 0 0 0 0 0 0
.........................................................GCGGCGCAAAGGACA.................................................................................................................................................................................. 15 1 20 0.05 1 0 0 0 1 0 0 0

Anti-sense strand reads

CAAAGTTGCTCTCACCCGCCCCGGTTACCACCATCCAACCTTAAAGTCAACTGGGGACGCCGCGTGTCCTGTATTGTGTAAGCGTGGAGCCGTGTTACAGTGCGGGTGTTAAACGTACGTTTTTACTTTATTTACGCCTACCGGCCGGTTTACCGAATTATAACAATTGCGATAGTGGGACGAGGAGACGACTAAAGGTCCTGCCGGAAGTGTGCGGCGTCTAATCGGACTCAATGTGGGTGCTCCCGTT
**************************************************........(((((...((((.......((((((((....(((..........)))....((((.(((......)))))))...))))))))((.((....((((((((((...))))).)))))...)).)))))).)))))........************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553488
RT_0-2 hours eggs
 SRR553486
Makindu_3 day-old ovaries
 M023
head
 SRR553487
NRT_0-2 hours eggs
 SRR553485
Chicharo_3 day-old ovaries
 M024
male body		 SRR618934
dsim w501 ovaries
..................................................................................................................................................................................................................................GGACTCGATGTGGGTG........ 16 1 1 9.00 9 9 0 0 0 0 0 0
..................................................................................................................................................................................................................................GGACTCGATGTGGGCG........ 16 2 20 6.60 132 118 6 0 2 6 0 0
...................................................................................................................................................................................................................................GACTCAATGTGGGCG........ 15 1 5 2.40 12 12 0 0 0 0 0 0
..................................................................................................................................................................................................................................GGACTCGATGTGGGT......... 15 1 2 1.00 2 2 0 0 0 0 0 0
...................................................................................................................................................................................................................................GACTCGATGTGGGTG........ 15 1 11 0.82 9 8 1 0 0 0 0 0
................................................................................................................................................................................................................................TCGCAGTCAATGTCGGTGC....... 19 3 17 0.76 13 0 0 8 0 0 5 0
.................................................................................................................................................................................................................................GGGACTCGATGTGGGTG........ 17 2 13 0.46 6 5 0 0 1 0 0 0
...................................................................................................................................................................................................................................GACTCAATGTGGGGG........ 15 1 4 0.25 1 0 1 0 0 0 0 0
.AAAGTTGCTGTCACCC......................................................................................................................................................................................................................................... 16 1 4 0.25 1 0 0 0 1 0 0 0
...................................................................................................................................................................................................................................GACTCAATGAGGGTG........ 15 1 5 0.20 1 1 0 0 0 0 0 0
............................................................................................................................................................................................................CGGAAGTCTGCGGCGTCTTCT......................... 21 3 6 0.17 1 1 0 0 0 0 0 0
................................ATCCAATCTTAAAGT........................................................................................................................................................................................................... 15 1 13 0.15 2 0 2 0 0 0 0 0
........................................................................................................................................................................GCGATAGTGAGACGA................................................................... 15 1 8 0.13 1 0 0 0 0 0 0 1
...............................................................................................................................................................................................................................ATGGGACTCGATGTGGGCG........ 19 3 8 0.13 1 1 0 0 0 0 0 0
.................................................................................................................................................................................................................................GGGACTCAATGTGGGGG........ 17 2 12 0.08 1 0 1 0 0 0 0 0
....................................................................................................TTCGGGTGTTAAACGT...................................................................................................................................... 16 1 15 0.07 1 0 0 0 0 0 0 1
................................................................................................................ACGTGCGTTTTTACT........................................................................................................................... 15 1 18 0.06 1 0 1 0 0 0 0 0
....................................................................................................................................................................AATTGCGAACGTGGGATG.................................................................... 18 3 20 0.05 1 0 1 0 0 0 0 0
.................................................................................................................................................................................................................................GGGACTCTATGTGGGTG........ 17 2 20 0.05 1 1 0 0 0 0 0 0
.................................................ACTGGGGACGTCTCGTGA....................................................................................................................................................................................... 18 3 20 0.05 1 0 0 0 0 0 0 1

Generated: 04/24/2015 at 10:46 AM