dsi_4583

five_prime_UTR [2l_11478983_11479095_-]; exon [2l_11478983_11479095_-]; five_prime_UTR [2l_11478642_11478872_-]; exon [2l_11477489_11478872_-]; intron [2l_11478873_11478982_-]

##################################################--------------------------------------------------------------------------------------------------------------################################################## AACCACAACATCAGCCCCACGGGAGCCAGAGCAACGGCAGCAATTTCATGGTAATTGTCCCCCGTCAGCGTCGATAAGAAAGACCTCGAAAAATACCTGAGCAGCCAGAGATTTAGTGACACCACCTCCACCTTCCACTTGCATTTTTTGTTTGTTGTAGCCACGCTCAGCGAAAGCAGTCGACAGCAGCAACAACAGCAATATGTAGGC ************************************************..................................(((((..((((...((((((...(((.....(((....)))......)))....)))).))...))))..))).))************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M024 male body	O001 Testis	SRR553488 RT_0-2 hours eggs	GSM343915 embryo	SRR553487 NRT_0-2 hours eggs	SRR618934 dsim w501 ovaries
.......................AGCCAGAGCAACGGCAGCAATTTCA..................................................................................................................................................................	25	0	1	1.00	1	0	1	0	0	0	0
.........ATCAGCCCCACGGGAGCCAGAGCAACGGC............................................................................................................................................................................	29	0	1	1.00	1	0	0	0	1	0	0
....................................................AATTGTCCCCCGTCAGCG............................................................................................................................................	18	0	1	1.00	1	0	1	0	0	0	0
.......................................................................................................................................................................CAGCGAAAGCAGTCGACAGC.......................	20	0	1	1.00	1	1	0	0	0	0	0
........................................................................................................................................................................AGCGAAAGCAGTCGACAGCAGCAACAA...............	27	0	1	1.00	1	0	0	1	0	0	0
.......................................................................................................................................................................CAGCGAAAGCAGTCGACAGCAGCAAC.................	26	0	1	1.00	1	1	0	0	0	0	0
......AACATCAGCACAACGGGA..........................................................................................................................................................................................	18	2	4	0.50	2	0	0	0	0	2	0
............................................................CCCCTCAGCGTCGAT.......................................................................................................................................	15	1	2	0.50	1	0	0	1	0	0	0
...........................................................................................................................................TGCATTATTGGTTTGTTGTATC.................................................	22	3	4	0.25	1	0	0	1	0	0	0
.................................................................................................................................................TTTTATTTGTGGTAGCCGCG.............................................	20	3	14	0.07	1	0	0	0	0	0	1

TTGGTGTTGTAGTCGGGGTGCCCTCGGTCTCGTTGCCGTCGTTAAAGTACCATTAACAGGGGGCAGTCGCAGCTATTCTTTCTGGAGCTTTTTATGGACTCGTCGGTCTCTAAATCACTGTGGTGGAGGTGGAAGGTGAACGTAAAAAACAAACAACATCGGTGCGAGTCGCTTTCGTCAGCTGTCGTCGTTGTTGTCGTTATACATCCG ************************************************..................................(((((..((((...((((((...(((.....(((....)))......)))....)))).))...))))..))).))************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR618934 dsim w501 ovaries	M024 male body	SRR902009 testis	SRR553485 Chicharo_3 day-old ovaries	SRR902008 ovaries	SRR553487 NRT_0-2 hours eggs
..........................................................GGGGGCAGTCTCAGC.........................................................................................................................................	15	1	5	1.60	8	8	0	0	0	0	0
......................................................................................................................TTTGGAGGAGATGGAAGGTGA.......................................................................	21	3	4	0.25	1	0	0	1	0	0	0
................................................................................TCGGGAGCTTTTTATGGGC...............................................................................................................	19	2	4	0.25	1	0	1	0	0	0	0
.......................................................................................................................GAGCTGGAGGTGGAAGGCGAAC.....................................................................	22	3	5	0.20	1	0	0	0	0	1	0
.................GTATCCTCGGTCTCGTTGTCGT...........................................................................................................................................................................	22	3	6	0.17	1	0	0	0	1	0	0
......................................................................................................................................................................................TGTCGTCGTTGTTGTCGT..........	18	0	20	0.15	3	3	0	0	0	0	0
..............................................................................................................................................................TCGCTGCGAGACGCTTCCGT................................	20	3	7	0.14	1	1	0	0	0	0	0
........................................................CTGGGGGCAGTCTCAGC.........................................................................................................................................	17	2	9	0.11	1	1	0	0	0	0	0
........................................................................TTGTTCTTTCTGGAGCTTGT......................................................................................................................	20	3	17	0.06	1	0	0	0	1	0	0
................................................................................................................................................................................GTCTGCTGTCGTAGCTGTTGT.............	21	3	19	0.05	1	0	0	0	0	0	1
........................................................CGGGGGGCAGTCTCAGCA........................................................................................................................................	18	3	20	0.05	1	1	0	0	0	0	0
........................................................CTGGGGGCAGTCTCAG..........................................................................................................................................	16	2	20	0.05	1	1	0	0	0	0	0

Species	Coordinate	ID	Alignment
droSim2	2l:11478823-11479032 -	dsi_4583	AACCACAACATCA------------GCCCCACGGGAGCCAGAGCAA-CGGCAGC-------AATTTC----ATGGTAATTGTCCCC-------------CGTCAGCGTCGA-TA-AGAAA-GACCTCGA------------------------A-------------------------------------------------------------------AAATACCTGAG--CAGCCAGAGATTT--AGTGACACCACC--TCCACCTTCCACTTGC-ATTTTTTGTTTGTTGTAGCCACGCTCAGCGAAAGCAGTC--GACAGCAGCAACAACAGC---AATAT--GTAGGC------
droSec2	scaffold_3:7192713-7192922 -		AGACACAACATCA------------GCCCCACGGGAGCCAGAGCAA-AGGCAGC-------AATTTC----ATGGTAATTGTCCCC-------------CGTCAGCGTCGA-TA-AGAAA-GACCTCGA------------------------A-------------------------------------------------------------------AAATACCTGAG--CAGCCAGAGATTT--AGTGACACCACC--TCCACCTTCCACTTGC-ATTTTTTGTTTGTTGTAGCCACGCTCAGCGAAAGCAGTC--GACAGCAGCAACAACAGC---AATAT--GTAGGC------
dm3	chr2L:11803625-11803835 -		AGCCACAACATCA------------GCACAACGGGAGCCAGAGCAAGAGGCAGC-------AATTTC----ATGGTAATTGTCCCC-------------AGTCAGCGTCGA-TA-AGAAA-GACCTCGA------------------------A-------------------------------------------------------------------AAATACCTGAG--CAGCCAGAGACTA--AGTGACACCACC--TCCACCTTCCACTTGC-ATTTTTTGTTTGTTGTAGCCACGCTCAGCGAAAGCAGTC--GACAGCAGCAACAACAGC---AATAT--GTAGGC------
droEre2	scaffold_4929:13611493-13611702 +		AGCCACACCATCA------------TCCCCACAGAAGCCAGAGCGA-GAGCAGC-------AATTTC----ATGGTAATTGTCCCC-------------CGTCAGCGTCGA-TA-AGAAA-GACCTCGA------------------------A-------------------------------------------------------------------CAATACCTGAG--CAGCCAGAGATTA--AGTGACACCACC--TCCACCTTCCACTTGC-ATTTTTTGTTTGTTGTAGCCACGCTCAGCGAAAGCAGTC--GACAGCAGCAACAACAGC---AATAT--GTAGGC------
droYak3	2L:8224261-8224470 -		AGCCACACCATCA------------GCCCCACAGGATCCAGAGCAA-CAGCAGC-------AATTTC----ATGGTAATTGTCCCC-------------CGTCAGCGTCGA-TA-AGAAA-GACTTCGA------------------------A-------------------------------------------------------------------AAATACCTGAG--CAGCCAGAGATTA--AGTGACACCACC--TCCACCTTCCACTTGC-ATTTTTTGTTTGTTGTAGCCACGCTCAGCGAAAGCAGTC--GACAGCAGCAACAACAGC---AATAT--GTAGGC------
droEug1	scf7180000409122:200441-200637 -		AACAA----------------------CCCATAGGAG---GAGCAA-AAGCAGC-------AATTTC----ATGGTAATTGTCC-C-------------CGTCAGCGTTGA-AA-TAAAACAACCAAGA------------------------A-------------------------------------------------------------------AAATACCTGTG--CAGCCTGAGATTA--AGTGACACTACC--TACACCTTCCACTTGC-CTTTTTTGTTTGTTGTAGCCACGCTCAGCGAAAGCAGTC--GACAGCAGCAACAACAGC---AATAT--GTAGGC------
droBia1	scf7180000302422:1223662-1223864 +		AACA-CACCCACA-------------CCCCACAGGAGC---AGCGG-CAGCAGC-------GATTTC----ATGGTAATTGTCC---------------CGTCAGCGACGA-AA-GCAAA-GACCAAGA------------------------A-------------------------------------------------------------------AGATACCTGAG--CAGCCAGAGATTA--AGTGACACCACC--TCCACCTTCCACTTGC-ATTTTTTGTTTGTTGTAGCCACGCTCAGCGAAAGCAGTC--GACAGCAGCAACAACAGC---AATAT--GTAGGC------
droTak1	scf7180000415863:478845-479043 +		CAC-----CAACA------------CCCCCACAGGAG----------AAGCAGC-------AATTTC----ATGGTAATTGTCCCC-------------CGTCAGCGACGA-AAGAAAAA-GACCAAGA------------------------A-------------------------------------------------------------------AAATACCTGAG--CAGCCAGAGATTA--AGTGACACCACCTCTCCACCTTCCACTTGC-ATTTTTTGTTTGTTGTAGCCACGCTCAGCGAAAGCAGTC--GACAGCAGCAACAACAGC---AATAT--GTAGGC------
droEle1	scf7180000491028:3389866-3390088 +		AACA-CCACACCACCACCACCACCATCCCCACAGGAGCAACAGCAA-CAGCAGC-------AATTTC----ATGGTAATTGTCCCC-------------CGTCAGCGTCGA-AA-GAAAA-GACCAAGA------------------------A-------------------------------------------------------------------AAATACCTAAG--CGGCCAGAGATTA--AGTGACACCACCTCTCCACCTTCCACTTGC-ATTTTTTGTTTGTTGTAGCCACGCTCAGCGAAAGCAGTC--GACAGCAGCAACAACAGC---AATAT--GTAGGC------
droRho1	scf7180000779410:280160-280358 -		AACA------CCA------------CCCCCACAGGAGC---AACAA-CAGCAGC-------AATTTC----ATGGTAATTGTCCCC-------------CGTCAGCGTCGA-A---AAAA-GACCAAGA------------------------A-------------------------------------------------------------------AAATACCTAAG--CAGCCAGAGATTA--AGTGACACCACC--TCCACCTTCCACTTGC-ATTTTTTGTTTGTTGTAGCCACGCTCAGCGAAAGCAGTC--GACAGCAGCAACAACAGC---AATAT--GTAGGC------
droFic1	scf7180000453493:161053-161260 -		AACA-CA---CCA------------CCCCCACAGGAGC---AGGCA-GAGCAGC-------AATTTC----ATGGTAATTGTCCCC-------------CGTCAGCGTCGAATA-AAAAA-GACCAAGA------------------------A-------------------------------------------------------------------AAAAACCTGAG--CAGCCAGAGATTA--AGTGACACCACCTCTCCACCTTCCACTTGC-ATTT-TTGTTTGTTGTAGCCACGCTCAGCGAAAGCAGTC--GACAGCAGCAACAACAGCAGCAATAT--GTAGGC------
droKik1	scf7180000302677:1066977-1067188 -		AACGGCAACATCA------------ACA--TCTGTAG----------CAGCAGC-------AACTTC----ATGGTAATTGTCC-C-------------CGTCAGCGTCGA-TTGAATAA-TACCAATA------------------------------------------------------------------------------CGAAGA---TAAATATATACCTGAGCGCAGTCAGAGACTAAGAGTGACACCACCTCTCCACCTTCCACTTGC-ATTTTTTGTTT---GTAGCCACGCTCAGCGAAAGCAGTC--GACAGCAGCAACAACATC---AATAT--GTAGGC------
droAna3	scaffold_12943:2467166-2467378 +		CAG-------------------------------CAGT---AGAAG-TAGCAGCAAGTCACAATTTCA---ATGGTAAATGTCCCC-------------CATCAGCGTGGAATA-AA------CAAAAAAAAATATAAAATTTATGAC---CAA-------------------------------------------------------------------TTATATTTGAG--CAGCCAGTGATTA--AGTGACACCTCC--ACCACCTTCCACTTGC-ATTTTTTGTTTGTTGTAGCCACGTTCAGCGAAAGCAGTC--GACAACAGCAACAACAGC---AATAT--GTAGGC------
droBip1	scf7180000396728:861989-862182 -		CCA--------------------------CCTAGGAGCAGCAGTGG-AAGCAGC-------TACTTT----ATGGTAAATGTCCCC-------------CACCAGCGACCA-T---CTAT-GACCAAGA------------------------A--------------------------------------------------------------------TTTATCCGAG--CAGCCAGTGATTA--AGTGACACCTCC--AACACCTTCCTCTTGCCTTTTTTTGTTTGTTGTAGCCACGTTCAGCGAAAGCAGTC--GACAACAGCAACAACAGC---AATAT--GTAGGC------
dp5	4_group3:969732-969895 -		AAGAACAACATC-------------------------------------------------AACCAC----ATGGTAATTGCCCC---------------AC-------------------------------------------------CAATTCC-CCCAG-CCAGCCAGCTCTCGGCAACAGCT-----------------------------------------------------CGATTA--AGTGACACC-----TCCA-CTTCCACTTGC-CTTTTTCGTTTGTTGTAGCCACGCTCAGTGAAAGCAGTC--GACAGCAGCAACAAC------AATAT--GTAGGC------
droPer2	scaffold_1:2448041-2448206 -		AAGAACAACATC-------------------------------------------------AACCAC----ATGGTAATTGCCCC---------------AC-------------------------------------------------CAATTCCCCCCAGCCCAGCCAGCTCTCGGCAACAGCT-----------------------------------------------------CGATTA--AGTGACACC-----TCCA-CTTCCACTTGC-CTTTTTCGTTTGTTGTAGCCACGCTCAGTGAAAGCAGTC--GACAGCAGCAACAAC------AATAT--GTAGGC------
droWil2	scf2_1100000004902:4636500-4636698 +		CGCCA-----GCA---------------ATTTGGGAGCCAAGGCGC-TCGCAAC--------GTGTC----ATAGTGAGTATG-----------------GTTAATGGGGG-TA-TTAAA-GGGCTAAATAAATATTAAATTTGTTACCGCAGATGCA-ACAGG-GCAGTCCGCCTTTGCGTAGGCCT-----------------------------------------------------CGTTTG--CGTGATGTT-----GCCA-CATCC-----------------------------ACACAGCAACAGC------AGCAGCAGCAACAGCAAC---AATAT--GCACAC------
droVir3	scaffold_12928:2240022-2240189 -		AACAGTAACAACA--GCAACAACAATGCCAGCAGCAGCAACAACAA-TAGCAGC-------GACAAT-TTGGCCAC-TTTGTCTGT-------------GGTCAATAC-------------------------------------------------------------------------------------------------------------------GCATCTG-G--CAGC---------------GCATCATG--TGCACATGCCACATCC-GC--------TGTTGCAG-------CAGCAGAAACAGCAACAACAGCAGCAGCAACAGC---AACAA--------------
droMoj3	scaffold_6308:131752-131938 -		AGGCACAGCAACA------------GC--AACAGCAGCAACAGCAG-CAGCAGC-------AACA---------GCAGCAGA-CGC-------------AGCAAACGCAGC-AG-CAACA-GACGTTGA------------------------C-------------------------------------------------------------------AAATGCCACAGCGCAGCA-AATATTGCAGGTGGCACCAAA--TAC---------------------GTTT---ATTGCCTC--GCAGCAGCAGCAGGC---ACAGCAGCAACAGCAGC---AACAGTTGCAAAATCAACT
droGri2	scaffold_15203:5084627-5084805 +		AGCAACAGCAGCA------------GCA--GCAGCAGCAACAACAA-CAACAAC-------AGCA----------TCAACAGGCACTGTCGGAGCCGCTGGGCAGCGTGGG-TC-AG--------------------------------------------------------CCGTATAAGAAGCAGCGATTGAGTGACGCCAATGCCAGCAACATGAA--------------------------------------------TCACCTGCCA-------------------------------CAGCACCA----GC--AACAGCAGCAGCAGCAGC---GCTCT--TCACCC------

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droSim2

AACCACAACATCA------------GCCCCACGGGAGCCAGAGCAA-CGGCAGC-------AATTTC----ATGGTAATTGTCCCC-------------CGTCAGCGTCGA-TA-AGAAA-GACCTCGA------------------------A-------------------------------------------------------------------AAATACCTGAG--CAGCCAGAGATTT--AGTGACACCACC--TCCACCTTCCACTTGC-ATTTTTTGTTTGTTGTAGCCACGCTCAGCGAAAGCAGTC--GACAGCAGCAACAACAGC---AATAT--GTAGGC------	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
...................................AGCCAGAGCAA-CGGCAGC-------AATTTC----A.................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0
.........ATCA------------GCCCCACGGGAGCCAGAGCAA-CGGC......................................................................................................................................................................................................................................................................................................................	29	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
............................................................................AATTGTCCCC-------------CGTCAGCG..............................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................CAGCGAAAGCAGTC--GACAGC..................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................AGCGAAAGCAGTC--GACAGCAGCAACAA..........................	27	1	1.00	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................CAGCGAAAGCAGTC--GACAGCAGCAAC............................	26	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droSec2

AGACACAACATCA------------GCCCCACGGGAGCCAGAGCAA-AGGCAGC-------AATTTC----ATGGTAATTGTCCCC-------------CGTCAGCGTCGA-TA-AGAAA-GACCTCGA------------------------A-------------------------------------------------------------------AAATACCTGAG--CAGCCAGAGATTT--AGTGACACCACC--TCCACCTTCCACTTGC-ATTTTTTGTTTGTTGTAGCCACGCTCAGCGAAAGCAGTC--GACAGCAGCAACAACAGC---AATAT--GTAGGC------	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
............................................................................................................................................................................................................................................................................................................ACGCTCAGCGAAAGCAGTC--GACAGC..................................	25	1	1.00	1	0	0	1	0
.....................................................................................................................................................................................................................................................................................GC-ATTTTTTGTTTGTTGTA................................................................	19	1	1.00	1	0	0	1	0
...........................................................................................................................................................................................................................................................................................................CACGCTCAGCGAAAGCAGTC--GACA....................................	24	1	1.00	1	0	0	1	0
.....................................................................................................................................................................................................................................GAG--CAGCCAGAGATTT--AGTGACA.........................................................................................................	23	1	1.00	1	0	1	0	0
.....................................................................................................................................................................................................................................................................................................................GAAAGCAGTC--GACAGCAGC...............................	19	1	1.00	1	0	1	0	0
......................................................................................................................................................................................................................................................................................................................AAAGCAGTC--GACAGCAGCAACAAC.........................	24	1	1.00	1	0	0	0	1
.........................GCCCCACGGGAGCCAGAGCAA-AGGC......................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	1	0	0	0
....................................................................................................................................................................................................................................TGAG--CAGCCAGAGATTT--AGTGACAC........................................................................................................	25	1	1.00	1	0	1	0	0
......................................................................................................................................................................................................................................................................................................GTAGCCACGCTCAGCGAAAGCAGT...........................................	24	1	1.00	1	0	0	1	0

dm3

AGCCACAACATCA------------GCACAACGGGAGCCAGAGCAAGAGGCAGC-------AATTTC----ATGGTAATTGTCCCC-------------AGTCAGCGTCGA-TA-AGAAA-GACCTCGA------------------------A-------------------------------------------------------------------AAATACCTGAG--CAGCCAGAGACTA--AGTGACACCACC--TCCACCTTCCACTTGC-ATTTTTTGTTTGTTGTAGCCACGCTCAGCGAAAGCAGTC--GACAGCAGCAACAACAGC---AATAT--GTAGGC------	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
...............................................................................................................................................................................................................................................................................................................CTCAGCGAAAGCAGTC--GACAGCAGCAACA...........................	29	1	5.00	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............A------------GCACAACGGGAGCCAGAGC.............................................................................................................................................................................................................................................................................................................................	20	1	5.00	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................GCCAGAGCAAGAGGCAGC-------AATTTC----ATG...............................................................................................................................................................................................................................................................................................	27	1	4.00	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0
...........................ACAACGGGAGCCAGAGCAAGAGGCAGC-------............................................................................................................................................................................................................................................................................................................	27	1	4.00	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....CAACATCA------------GCACAACGGGAGCCAGAG..............................................................................................................................................................................................................................................................................................................................	26	1	4.00	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........ATCA------------GCACAACGGGAGCCAGAGC.............................................................................................................................................................................................................................................................................................................................	23	1	4.00	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
..............................ACGGGAGCCAGAGCAAGAGGCA.....................................................................................................................................................................................................................................................................................................................	22	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................AACGGGAGCCAGAGCAAGAGGCAGC-------............................................................................................................................................................................................................................................................................................................	25	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
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...............................CGGGAGCCAGAGCAAGAGGCAGC-------A...........................................................................................................................................................................................................................................................................................................	24	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
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.........................................................................................................................................................................................................................................................................................................GCCACGCTCAGCGAAAGCAGTC--........................................	22	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................CGAAAGCAGTC--GACAGCAG................................	19	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................AGCCAGAGACTA--AGTGACACCACC--TCC...............................................................................................	27	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................CTCAGCGAAAGCAGTC--GACAGCAGCAAC............................	28	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................CTCAGCGAAAGCAGTC--GACAGCAGC...............................	25	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
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...............................................................................................................................................................................................................................ATACCTGAG--CAGCCAGAGACT...................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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.................................................................................................................................................................................................................................................................................................................CAGCGAAAGCAGTC--GACAGCAGCAAC............................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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...........................................................................................................................CCTCGA------------------------A-------------------------------------------------------------------AAATACCTGAG--CA.............................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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....................................................................................................................................................................................................................................TGAG--CAGCCAGAGACTA--AGTGA...........................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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.....................................................................................................................................................................................................................................................................................................................GAAAGCAGTC--GACAGCAGC...............................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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......AACATCA------------GCACAACGGGAGCC..................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..CCACAACATCA------------GCACAACGGGAGC...................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................GTC--GACAGCAGCAACAACAGC---A..................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................TC--GACAGCAGCAACAACAGC---AATAT--G...........	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................CAGCAGCAACAACAGC---AATA...............	20	15	0.07	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droEre2

AGCCACACCATCA------------TCCCCACAGAAGCCAGAGCGA-GAGCAGC-------AATTTC----ATGGTAATTGTCCCC-------------CGTCAGCGTCGA-TA-AGAAA-GACCTCGA------------------------A-------------------------------------------------------------------CAATACCTGAG--CAGCCAGAGATTA--AGTGACACCACC--TCCACCTTCCACTTGC-ATTTTTTGTTTGTTGTAGCCACGCTCAGCGAAAGCAGTC--GACAGCAGCAACAACAGC---AATAT--GTAGGC------	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
......................................................................................................................................................................................................................................................................................................GTAGCCACGCTCAGCGAAAGCAGTC--........................................	25	1	3.00	3	0	0	0	0	3	0	0
..................................................................................................................................................................................................................................................................................................................AGCGAAAGCAGTC--GACAGCAGC...............................	22	1	1.00	1	1	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................CAGCGAAAGCAGTC--GACAGCAGCAAC............................	26	1	1.00	1	0	0	0	0	0	1	0
........................................................................................................................................................................................................................................................................................................................AGCAGTC--GACAGCAGCAACA...........................	20	1	1.00	1	1	0	0	0	0	0	0
........................................GAGCGA-GAGCAGC-------AATTTC----ATGGT.............................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	1	0	0
............A------------TCCCCACAGAAGCCAGAGC.............................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	1	0	0	0
...................................AGCCAGAGCGA-GAGCAGC-------A...........................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	1	0	0	0
.............................CACAGAAGCCAGAGCGA-GAGCAGC-------............................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	1	0
........CATCA------------TCCCCACAGAAGCCAGAGC.............................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	1	0
........................................................................................................................................................................................................................................................................................................AGCCACGCTCAGCGAAAGCAGT...........................................	22	1	1.00	1	1	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................CGCTCAGCGAAAGCAGTC--GACAGCA.................................	25	1	1.00	1	1	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................ACGCTCAGCGAAAGCAGTC--GACAGC..................................	25	1	1.00	1	0	0	0	0	1	0	0
....................................................................................................GTCAGCGTCGA-TA-AGAAA-G...............................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	1	0

droYak3

AGCCACACCATCA------------GCCCCACAGGATCCAGAGCAA-CAGCAGC-------AATTTC----ATGGTAATTGTCCCC-------------CGTCAGCGTCGA-TA-AGAAA-GACTTCGA------------------------A-------------------------------------------------------------------AAATACCTGAG--CAGCCAGAGATTA--AGTGACACCACC--TCCACCTTCCACTTGC-ATTTTTTGTTTGTTGTAGCCACGCTCAGCGAAAGCAGTC--GACAGCAGCAACAACAGC---AATAT--GTAGGC------	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
.......................................................................................................................................................................................................................................................................................................................AAGCAGTC--GACAGCAGCAAC............................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................CAGCGAAAGCAGTC--GACAGCAGC...............................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................GTAGCCACGCTCAGCGAAAGCAGTC--........................................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................CAACAACAGC---AATAT--GTAGGC------	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................TACCTGAG--CAGCCAGAGATTA--AGTGA...........................................................................................................	26	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................GCAGTC--GACAGCAGCAACAACA........................	22	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
............................CCACAGGATCCAGAGCAA-CAGCAG....................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.................................................................................................................................................................................................................................................................................................................CAGCGAAAGCAGTC--GACAGC..................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................CACGCTCAGCGAAAGCAGTC--GACAGC..................................	26	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
........................................................................................................................................................................................................................................................................................................AGCCACGCTCAGCGAAAGCAGTC--........................................	23	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
........................................................................................................................................................................................................................................................................................................AGCCACGCTCAGCGAAAGCAGTC--GA......................................	25	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.............................CACAGGATCCAGAGCAA-CAGC......................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
........CATCA------------GCCCCACAGGATCCAGAG..............................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0

droEug1

AACAA----------------------CCCATAGGAG---GAGCAA-AAGCAGC-------AATTTC----ATGGTAATTGTCC-C-------------CGTCAGCGTTGA-AA-TAAAACAACCAAGA------------------------A-------------------------------------------------------------------AAATACCTGTG--CAGCCTGAGATTA--AGTGACACTACC--TACACCTTCCACTTGC-CTTTTTTGTTTGTTGTAGCCACGCTCAGCGAAAGCAGTC--GACAGCAGCAACAACAGC---AATAT--GTAGGC------	Size	Hit Count	Total Norm	Total
No Reads

droBia1

AACA-CACCCACA-------------CCCCACAGGAGC---AGCGG-CAGCAGC-------GATTTC----ATGGTAATTGTCC---------------CGTCAGCGACGA-AA-GCAAA-GACCAAGA------------------------A-------------------------------------------------------------------AGATACCTGAG--CAGCCAGAGATTA--AGTGACACCACC--TCCACCTTCCACTTGC-ATTTTTTGTTTGTTGTAGCCACGCTCAGCGAAAGCAGTC--GACAGCAGCAACAACAGC---AATAT--GTAGGC------	Size	Hit Count	Total Norm	Total
No Reads

droTak1

CAC-----CAACA------------CCCCCACAGGAG----------AAGCAGC-------AATTTC----ATGGTAATTGTCCCC-------------CGTCAGCGACGA-AAGAAAAA-GACCAAGA------------------------A-------------------------------------------------------------------AAATACCTGAG--CAGCCAGAGATTA--AGTGACACCACCTCTCCACCTTCCACTTGC-ATTTTTTGTTTGTTGTAGCCACGCTCAGCGAAAGCAGTC--GACAGCAGCAACAACAGC---AATAT--GTAGGC------	Size	Hit Count	Total Norm	Total
No Reads

droEle1

AACA-CCACACCACCACCACCACCATCCCCACAGGAGCAACAGCAA-CAGCAGC-------AATTTC----ATGGTAATTGTCCCC-------------CGTCAGCGTCGA-AA-GAAAA-GACCAAGA------------------------A-------------------------------------------------------------------AAATACCTAAG--CGGCCAGAGATTA--AGTGACACCACCTCTCCACCTTCCACTTGC-ATTTTTTGTTTGTTGTAGCCACGCTCAGCGAAAGCAGTC--GACAGCAGCAACAACAGC---AATAT--GTAGGC------	Size	Hit Count	Total Norm	Total
No Reads

droRho1

AACA------CCA------------CCCCCACAGGAGC---AACAA-CAGCAGC-------AATTTC----ATGGTAATTGTCCCC-------------CGTCAGCGTCGA-A---AAAA-GACCAAGA------------------------A-------------------------------------------------------------------AAATACCTAAG--CAGCCAGAGATTA--AGTGACACCACC--TCCACCTTCCACTTGC-ATTTTTTGTTTGTTGTAGCCACGCTCAGCGAAAGCAGTC--GACAGCAGCAACAACAGC---AATAT--GTAGGC------	Size	Hit Count	Total Norm	Total
No Reads

droFic1

AACA-CA---CCA------------CCCCCACAGGAGC---AGGCA-GAGCAGC-------AATTTC----ATGGTAATTGTCCCC-------------CGTCAGCGTCGAATA-AAAAA-GACCAAGA------------------------A-------------------------------------------------------------------AAAAACCTGAG--CAGCCAGAGATTA--AGTGACACCACCTCTCCACCTTCCACTTGC-ATTT-TTGTTTGTTGTAGCCACGCTCAGCGAAAGCAGTC--GACAGCAGCAACAACAGCAGCAATAT--GTAGGC------	Size	Hit Count	Total Norm	Total
No Reads

droKik1

AACGGCAACATCA------------ACA--TCTGTAG----------CAGCAGC-------AACTTC----ATGGTAATTGTCC-C-------------CGTCAGCGTCGA-TTGAATAA-TACCAATA------------------------------------------------------------------------------CGAAGA---TAAATATATACCTGAGCGCAGTCAGAGACTAAGAGTGACACCACCTCTCCACCTTCCACTTGC-ATTTTTTGTTT---GTAGCCACGCTCAGCGAAAGCAGTC--GACAGCAGCAACAACATC---AATAT--GTAGGC------	Size	Hit Count	Total Norm	Total
No Reads

droAna3

CAG-------------------------------CAGT---AGAAG-TAGCAGCAAGTCACAATTTCA---ATGGTAAATGTCCCC-------------CATCAGCGTGGAATA-AA------CAAAAAAAAATATAAAATTTATGAC---CAA-------------------------------------------------------------------TTATATTTGAG--CAGCCAGTGATTA--AGTGACACCTCC--ACCACCTTCCACTTGC-ATTTTTTGTTTGTTGTAGCCACGTTCAGCGAAAGCAGTC--GACAACAGCAACAACAGC---AATAT--GTAGGC------	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
......................................................................................................................................................................................................................................................................................................GTAGCCACGTTCAGCGAAAGCAGTC--........................................	25	1	4.00	4	0	2	0	0	2	0
........................................................................................................................................................................................................................................................................................................AGCCACGTTCAGCGAAAGCAGTC--........................................	23	1	1.00	1	0	1	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................C--GACAACAGCAACAACAGC---AATAT--GTA.........	27	1	1.00	1	0	1	0	0	0	0
..........................................GAAG-TAGCAGCAAGTCACAATTTCA---ATG...............................................................................................................................................................................................................................................................................................	28	1	1.00	1	0	1	0	0	0	0
.....................................................................................................................................................................................................................................................................................................TGTAGCCACGTTCAGCGAAAGCAGT...........................................	25	1	1.00	1	0	0	0	0	1	0
....................................................................................................................................................................................................................................................................................................................................AACAGCAACAACAGC---AATAT--GTA.........	23	1	1.00	1	1	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................GTAGCCACGTTCAGCGAAAGCAGT...........................................	24	1	1.00	1	0	0	0	0	1	0
..........................................................................................................................................................................................................................................................................ACCTTCCACTTGC-ATTTTTTGTTTGTT...................................................................	27	1	1.00	1	0	1	0	0	0	0

droBip1

CCA--------------------------CCTAGGAGCAGCAGTGG-AAGCAGC-------TACTTT----ATGGTAAATGTCCCC-------------CACCAGCGACCA-T---CTAT-GACCAAGA------------------------A--------------------------------------------------------------------TTTATCCGAG--CAGCCAGTGATTA--AGTGACACCTCC--AACACCTTCCTCTTGCCTTTTTTTGTTTGTTGTAGCCACGTTCAGCGAAAGCAGTC--GACAACAGCAACAACAGC---AATAT--GTAGGC------	Size	Hit Count	Total Norm	Total
No Reads

dp5

AAGAACAACATC-------------------------------------------------AACCAC----ATGGTAATTGCCCC---------------AC-------------------------------------------------CAATTCC-CCCAG-CCAGCCAGCTCTCGGCAACAGCT-----------------------------------------------------CGATTA--AGTGACACC-----TCCA-CTTCCACTTGC-CTTTTTCGTTTGTTGTAGCCACGCTCAGTGAAAGCAGTC--GACAGCAGCAACAAC------AATAT--GTAGGC------	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
......................................................................................................................................................................................................................................................................................................GTAGCCACGCTCAGTGAAAG...............................................	20	2	0.50	1	0	1	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................GTGAAAGCAGTC--GACAGCAGC...............................	21	2	0.50	1	0	1	0	0	0	0	0	0	0	0

droPer2

AAGAACAACATC-------------------------------------------------AACCAC----ATGGTAATTGCCCC---------------AC-------------------------------------------------CAATTCCCCCCAGCCCAGCCAGCTCTCGGCAACAGCT-----------------------------------------------------CGATTA--AGTGACACC-----TCCA-CTTCCACTTGC-CTTTTTCGTTTGTTGTAGCCACGCTCAGTGAAAGCAGTC--GACAGCAGCAACAAC------AATAT--GTAGGC------	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
............................................................................AATTGCCCC---------------AC-------------------------------------------------CAATTCCCCCA.......................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0

droWil2

CGCCA-----GCA---------------ATTTGGGAGCCAAGGCGC-TCGCAAC--------GTGTC----ATAGTGAGTATG-----------------GTTAATGGGGG-TA-TTAAA-GGGCTAAATAAATATTAAATTTGTTACCGCAGATGCA-ACAGG-GCAGTCCGCCTTTGCGTAGGCCT-----------------------------------------------------CGTTTG--CGTGATGTT-----GCCA-CATCC-----------------------------ACACAGCAACAGC------AGCAGCAGCAACAGCAAC---AATAT--GCACAC------	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
.........................................................................................................................................................................TCCGCCTTTGCGTAGGCCT-----------------------------------------------------CGTT....................................................................................................................	23	1	1.00	1	0	0	0	0	1
....................................................................................................................................................................................GTAGGCCT-----------------------------------------------------CGTTTG--CGTGATGTT-----..................................................................................................	23	1	1.00	1	0	0	0	1	0
CGCCA-----GCA---------------ATTTGGGAGCCAAG...............................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	1
........................................................................................................................................................................................................................................................................................................................AGC------AGCAGCAGCAACAGCAAC---AA.................	23	20	0.10	2	0	0	0	2	0
...................................................................................................................................................................................................................................................................................................................................CAGCAGCAACAGCAAC---AAT................	19	20	0.05	1	0	0	0	1	0
...................................................................................................................................................................................................................................................................................................................GCAACAGC------AGCAGCAGCAAC............................	20	20	0.05	1	0	0	0	1	0
......................................................................................................................................................................................................................................................................................................................ACAGC------AGCAGCAGCAACAGC.........................	20	20	0.05	1	0	0	0	0	1
................................................................................................................................................................................................................................................................................................................ACAGCAACAGC------AGCAGCAGCAAC............................	23	20	0.05	1	0	0	0	1	0

droVir3

AACAGTAACAACA--GCAACAACAATGCCAGCAGCAGCAACAACAA-TAGCAGC-------GACAAT-TTGGCCAC-TTTGTCTGT-------------GGTCAATAC-------------------------------------------------------------------------------------------------------------------GCATCTG-G--CAGC---------------GCATCATG--TGCACATGCCACATCC-GC--------TGTTGCAG-------CAGCAGAAACAGCAACAACAGCAGCAGCAACAGC---AACAA--------------	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
...................................................................................................GGTCAATAC-------------------------------------------------------------------------------------------------------------------GCATCTG-G--CAGC---------------GC..........................................................................................................	23	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................GCAG-------CAGCAGAAACAGCAACAACAGCA.................................	27	1	2.00	2	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................GAAACAGCAACAACAGCAGCAGCA...........................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................CCACATCC-GC--------TGTTGCAG-------CA......................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................G-------CAGCAGAAACAGCAACAACAGC..................................	23	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................TAGCAGC-------GACAAT-TTGGCCA..............................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................ATCATG--TGCACATGCCACATCC-GC--------TGTT...................................................................	28	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................ATCTG-G--CAGC---------------GCATCATG--TGCA..............................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................T-------------GGTCAATAC-------------------------------------------------------------------------------------------------------------------GCATCTG-G--...............................................................................................................................	18	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................AATAC-------------------------------------------------------------------------------------------------------------------GCATCTG-G--CAGC---------------GCATCATG--TGC...............................................................................................	28	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................ACATGCCACATCC-GC--------TGTTGCAG-------C.......................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................AT-TTGGCCAC-TTTGTCTGT-------------......................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................GGTCAATAC-------------------------------------------------------------------------------------------------------------------GCATCTG-G--CAGC---------------G...........................................................................................................	22	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................CAGCAGAAACAGCAACAACAGCA.................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................GT-------------GGTCAATAC-------------------------------------------------------------------------------------------------------------------GCATCTG-G--CAGC---------------GC..........................................................................................................	25	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................GGTCAATAC-------------------------------------------------------------------------------------------------------------------GCATCTG-G--C..............................................................................................................................	18	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................TGT-------------GGTCAATAC-------------------------------------------------------------------------------------------------------------------GCATCTG-G--CAGC---------------GCA.........................................................................................................	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................CATCTG-G--CAGC---------------GCATCATG--TGCA..............................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0
.......................................................................................................................................................................................................................................................................TGCACATGCCACATCC-GC--------TGTT...................................................................	22	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................GAAACAGCAACAACAGCAGC...............................	20	2	0.50	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................GCAGAAACAGCAACAACAGCA.................................	21	2	0.50	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................CAGAAACAGCAACAACAGCA.................................	20	4	0.25	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................GCAGCAGCAACAACAA-TAGCA.....................................................................................................................................................................................................................................................................................................................	21	6	0.17	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...AGTAACAACA--GCAACAACA.................................................................................................................................................................................................................................................................................................................................................	19	14	0.07	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................GCAG-------CAGCAGAAACAGCA..........................................	18	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................CAACAACAGCAGCAGCAACAG.......................	21	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................AACAGCAGCAGCAACAGC---AAC................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droMoj3

AGGCACAGCAACA------------GC--AACAGCAGCAACAGCAG-CAGCAGC-------AACA---------GCAGCAGA-CGC-------------AGCAAACGCAGC-AG-CAACA-GACGTTGA------------------------C-------------------------------------------------------------------AAATGCCACAGCGCAGCA-AATATTGCAGGTGGCACCAAA--TAC---------------------GTTT---ATTGCCTC--GCAGCAGCAGCAGGC---ACAGCAGCAACAGCAGC---AACAGTTGCAAAATCAACT	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
..............................................................................................................................................................................................................................................................CACCAAA--TAC---------------------GTTT---ATTGC..............................................................	19	1	1.00	1	1	0	0	0	0	0
..........................................................................GCAGCAGA-CGC-------------AGCAAACGCAG...........................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	1	0
.......................................................................................................................................................................................................................................................................................................................CAGCAGGC---ACAGCAGCAAC............................	19	2	0.50	1	0	0	0	0	1	0
..................................................................................................................................................................................................................................................................................................................AGCAGCAGCAGGC---ACAGCA.................................	19	5	0.20	1	0	0	0	0	1	0
.........................................................................................................................................................................................................................................................................................................................................CAACAGCAGC---AACAGTTGCA.........	20	16	0.06	1	1	0	0	0	0	0
.....CAGCAACA------------GC--AACAGCAGCAACAGCA............................................................................................................................................................................................................................................................................................................................	26	20	0.05	1	0	0	1	0	0	0

droGri2

AGCAACAGCAGCA------------GCA--GCAGCAGCAACAACAA-CAACAAC-------AGCA----------TCAACAGGCACTGTCGGAGCCGCTGGGCAGCGTGGG-TC-AG--------------------------------------------------------CCGTATAAGAAGCAGCGATTGAGTGACGCCAATGCCAGCAACATGAA--------------------------------------------TCACCTGCCA-------------------------------CAGCACCA----GC--AACAGCAGCAGCAGCAGC---GCTCT--TCACCC------	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
....ACAGCAGCA------------GCA--GCAGCAGCAAC................................................................................................................................................................................................................................................................................................................................	23	20	0.10	2	2	0
....ACAGCAGCA------------GCA--GCAGCAGCAACAAC.............................................................................................................................................................................................................................................................................................................................	26	20	0.05	1	1	0

-11.9	-11.4	-11.3	-10.9

dsi_4583

2l:11478873-11478982 -

Candidate

Unknown

Predicted structure

Flybase annnotation

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads