ID:dsi_4582 |
Coordinate:3l:16177080-16177179 + |
Confidence:Candidate |
Type:Unknown |
[View on UCSC Genome Browser {Cornell Mirror}] |
| Legend: | mature | star | mismatch in read |
|
|
|
|
| -18.8 |
 |
CDS [3l_16177180_16177303_+]; five_prime_UTR [3l_16176988_16177179_+]; exon [3l_16176988_16177303_+]
No Repeatable elements found
| ######################################################################################################################################################################################################## GTAGTTTTAATTAATAATAAAATCAGATTTAACAAAGCAAAGCAGCCAATGTGAGTTCTTTCAAACGCAGCGAGTCAACGAGGCGATTAGTTCGGCAGTTTTCACTCATAAATTTTAATTTTTCGTCTCCACCACAAATCGACGAAAAAGATGTCGGACTGGGACTCTGTGACTGTTCTGCGGAAGAAGGCACCCAAATC **************************************************((((((.........((.(((.((((........)))).))))).........)))))).........(((((((((.............))))))))).************************************************** |
Read size | # Mismatch | Hit Count | Total Norm | Total | SRR902009 testis |
M023 head |
SRR618934 dsim w501 ovaries |
M024 male body |
M025 embryo |
SRR553485 Chicharo_3 day-old ovaries |
SRR553486 Makindu_3 day-old ovaries |
M053 female body |
SRR902008 ovaries |
SRR553487 NRT_0-2 hours eggs |
GSM343915 embryo |
SRR553488 RT_0-2 hours eggs |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ...................................................................................................................................................AAGATGTCGGACTGGGACTC................................. | 20 | 0 | 1 | 2.00 | 2 | 0 | 2 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| ...............................................................................................................................................................TGGGACTCTGTGACTGTTCTGCGGA................ | 25 | 0 | 1 | 2.00 | 2 | 0 | 0 | 0 | 0 | 0 | 1 | 1 | 0 | 0 | 0 | 0 | 0 |
| .......................................................................................................................................................................TGTGACTGTTCTGCGGAAGAAGGCACCC..... | 28 | 0 | 1 | 2.00 | 2 | 0 | 0 | 0 | 0 | 2 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| .....................................................................................................................................................................TCTGTGACTGTTCTGCGGAAG.............. | 21 | 0 | 1 | 2.00 | 2 | 2 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| ..........................................................................................................................................................................GACTGTTCTGCGGAA............... | 15 | 0 | 1 | 2.00 | 2 | 0 | 0 | 2 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| .......................................................................................................................................................................TGTGACTGTTCTGCGGAAGAAT........... | 22 | 1 | 1 | 1.00 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| ..............................................................................CGAGGCGATTAGTTCGGCAGTTT................................................................................................... | 23 | 0 | 1 | 1.00 | 1 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| ..........................................................................................................................................................CGGACTGGGACTCTGTGACTGT........................ | 22 | 0 | 1 | 1.00 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 |
| ..................................................................................................................................................AAAGATGTCGGACTCGGACTCTGTGACT.......................... | 28 | 1 | 1 | 1.00 | 1 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| ......................................................................................................................................................ATGTCGGACTGGGACTCTGTGACTGTT....................... | 27 | 0 | 1 | 1.00 | 1 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| .............................................................................................................................................................................TGTTCTGCGGAAGAAGG.......... | 17 | 0 | 1 | 1.00 | 1 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| .....................................................................................ATTAGTTCGGCAGTTTTCACT.............................................................................................. | 21 | 0 | 1 | 1.00 | 1 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| ...............................................................................................................................................................TGGGACTCTGTGACTGTTCTGCGGAAGAA............ | 29 | 0 | 1 | 1.00 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 |
| ....................................................................................................................................................................CTCTGTGACTGTTCTGCGGAAGAA............ | 24 | 0 | 1 | 1.00 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 |
| ..................................................................................................................................................................GACTCTGTGACTGTTCTGCGGTT............... | 23 | 2 | 1 | 1.00 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| .......................................................................................................................................................................TGTGACTGTTCTGCGGAAGAA............ | 21 | 0 | 1 | 1.00 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| ...........................................................................................................................................................GGACTGGGACTCTGTGAC........................... | 18 | 0 | 1 | 1.00 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 |
| ....................................................................................GATTAGTTCGGCAGTTTTCACT.............................................................................................. | 22 | 0 | 1 | 1.00 | 1 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| ..................................................................................................................................................................GACTCTGTGACTGTTCTGCG.................. | 20 | 0 | 1 | 1.00 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 |
| .............................................................................................................................................................................TGTTCTGCGGAAGAAGGCACCC..... | 22 | 0 | 1 | 1.00 | 1 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| ...............AATAAAATCAGATTTAACAAA.................................................................................................................................................................... | 21 | 0 | 1 | 1.00 | 1 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 |
| ....................................................................................................................................................................CTCTGTGACTGTTCTGCGGA................ | 20 | 0 | 1 | 1.00 | 1 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| .........................................................................................................................................................TCGGACTGGGACTCTGTGACTGTTC...................... | 25 | 0 | 1 | 1.00 | 1 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 |
| ........................................................................................................................................................................GTGACTGTTCTGCGGAAGAAG........... | 21 | 0 | 1 | 1.00 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| ..............TAATAAAATCAGATTTAACAAAGC.................................................................................................................................................................. | 24 | 0 | 1 | 1.00 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 |
| ...............................................................................................................................................................TGGGACTCTGTGACTGTTCTGCGGAAG.............. | 27 | 0 | 1 | 1.00 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 |
| ....................................................................................................................................................................CTCTGTGACTGTTCTGCGGAA............... | 21 | 0 | 1 | 1.00 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| .........................................................................GTCAACGAGACGATTAGCT............................................................................................................ | 19 | 2 | 2 | 0.50 | 1 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| ..................................................................................................................................................................................TTCGGAAGAAGGCCCCCAACT. | 21 | 3 | 3 | 0.33 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 |
| ...................................................................................................................................................AATATGTCGGACTGG...................................... | 15 | 1 | 7 | 0.14 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 |
| .....................................................................................................................................................GATGTCACACTGGGACT.................................. | 17 | 2 | 9 | 0.11 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 |
|
CATCAAAATTAATTATTATTTTAGTCTAAATTGTTTCGTTTCGTCGGTTACACTCAAGAAAGTTTGCGTCGCTCAGTTGCTCCGCTAATCAAGCCGTCAAAAGTGAGTATTTAAAATTAAAAAGCAGAGGTGGTGTTTAGCTGCTTTTTCTACAGCCTGACCCTGAGACACTGACAAGACGCCTTCTTCCGTGGGTTTAG
**************************************************((((((.........((.(((.((((........)))).))))).........)))))).........(((((((((.............))))))))).************************************************** |
Read size | # Mismatch | Hit Count | Total Norm | Total | SRR902009 testis |
SRR902008 ovaries |
GSM343915 embryo |
SRR553487 NRT_0-2 hours eggs |
SRR618934 dsim w501 ovaries |
|---|---|---|---|---|---|---|---|---|---|---|
| ...............................................................................................................................AGGTGGTGTTTAGCTGCTT...................................................... | 19 | 0 | 1 | 1.00 | 1 | 1 | 0 | 0 | 0 | 0 |
| .....................................................................................................................................................CTACAGCCTGACCTTGAGAC............................... | 20 | 1 | 1 | 1.00 | 1 | 1 | 0 | 0 | 0 | 0 |
| ..........................................................................................................................TGCAGAGGGGGTGTTTAGCTGC........................................................ | 22 | 2 | 1 | 1.00 | 1 | 1 | 0 | 0 | 0 | 0 |
| ....................................................................................................................................................ACTACAGCCTGACCTTGAGAC............................... | 21 | 2 | 1 | 1.00 | 1 | 1 | 0 | 0 | 0 | 0 |
| .....................................................................................................................................................CTACAGCCTGACATTGAGACT.............................. | 21 | 3 | 1 | 1.00 | 1 | 1 | 0 | 0 | 0 | 0 |
| .....................................................................................................................................................CTACAGCCTGACATTGAGA................................ | 19 | 2 | 1 | 1.00 | 1 | 1 | 0 | 0 | 0 | 0 |
| .....................................................................................................................................................CTACAGCCTGATCTTGAGA................................ | 19 | 2 | 1 | 1.00 | 1 | 0 | 1 | 0 | 0 | 0 |
| .......................................................................................................................................................ACAGCCTGACCTTGAGACAATA........................... | 22 | 3 | 1 | 1.00 | 1 | 0 | 1 | 0 | 0 | 0 |
| ......................................................................................................................................................AGCAGCCTGACACTGAGACACT............................ | 22 | 3 | 1 | 1.00 | 1 | 0 | 1 | 0 | 0 | 0 |
| .......................................................................................................................................................ACAGCCTGACATTGAGACA.............................. | 19 | 2 | 1 | 1.00 | 1 | 1 | 0 | 0 | 0 | 0 |
| .....................................................................................................................................................CGACAGCCTGACCTTGAGA................................ | 19 | 2 | 1 | 1.00 | 1 | 1 | 0 | 0 | 0 | 0 |
| .......................................................................................................................................................ACAGCCTGACCTTGAGAAACT............................ | 21 | 2 | 1 | 1.00 | 1 | 1 | 0 | 0 | 0 | 0 |
| .....................................................................................................................................................CTGCAGCCTGACATTGAGACA.............................. | 21 | 3 | 1 | 1.00 | 1 | 0 | 1 | 0 | 0 | 0 |
| .....................................................................................................................................................CTACAGCCTGACATTGAGAA............................... | 20 | 3 | 2 | 0.50 | 1 | 1 | 0 | 0 | 0 | 0 |
| .....................................................................................................................................................CTACAGCCTGACCTTGAG................................. | 18 | 1 | 2 | 0.50 | 1 | 1 | 0 | 0 | 0 | 0 |
| ........................................................................................................................................................CAGCCTGACATTGAGACA.............................. | 18 | 2 | 2 | 0.50 | 1 | 0 | 1 | 0 | 0 | 0 |
| .............................CTTGTGTCGTTTCGTCGGTTACT.................................................................................................................................................... | 23 | 3 | 2 | 0.50 | 1 | 0 | 0 | 1 | 0 | 0 |
| .....................................................................................................................................................CTGCAGCCTGACCTTGAGACT.............................. | 21 | 3 | 3 | 0.33 | 1 | 1 | 0 | 0 | 0 | 0 |
| ......................................................................................................................................................TACAGCCTGACCTTGAGACT.............................. | 20 | 2 | 3 | 0.33 | 1 | 0 | 1 | 0 | 0 | 0 |
| .....................................................................................................................................................CTGCAGCCTGACATTGAGAC............................... | 20 | 3 | 6 | 0.33 | 2 | 2 | 0 | 0 | 0 | 0 |
| .......................................................................................................................................................GCAGCCTGACATTGAGACA.............................. | 19 | 3 | 6 | 0.33 | 2 | 2 | 0 | 0 | 0 | 0 |
| .....................................................................................................................................................CTGCAGCCTGACCTTGAGAC............................... | 20 | 2 | 3 | 0.33 | 1 | 0 | 1 | 0 | 0 | 0 |
| .......................................................................................................................................................ACAGCCTGACATTGAGACAA............................. | 20 | 3 | 3 | 0.33 | 1 | 1 | 0 | 0 | 0 | 0 |
| .............................ATTGTGTCGTTTCGTCGGTTTCT.................................................................................................................................................... | 23 | 3 | 4 | 0.25 | 1 | 0 | 0 | 1 | 0 | 0 |
| .......................................................................................................................................................ACAGCCTGACATTGAGA................................ | 17 | 2 | 10 | 0.20 | 2 | 2 | 0 | 0 | 0 | 0 |
| .......................................................................................................................................................ACAGCCTGATCTTGAGACA.............................. | 19 | 2 | 6 | 0.17 | 1 | 1 | 0 | 0 | 0 | 0 |
| .......................................................................................................................................................ACAGCCTGACAATGAGA................................ | 17 | 2 | 7 | 0.14 | 1 | 1 | 0 | 0 | 0 | 0 |
| .....................................................................................................................................................CTGCAGCCTGACATTGAGA................................ | 19 | 3 | 14 | 0.14 | 2 | 1 | 1 | 0 | 0 | 0 |
| ......................................................................................................................................................AGCAGCCTGACCTTGAGACA.............................. | 20 | 3 | 8 | 0.13 | 1 | 1 | 0 | 0 | 0 | 0 |
| .......................................................................................................................................................GCAGCCTGATCTTGAGACA.............................. | 19 | 3 | 16 | 0.13 | 2 | 2 | 0 | 0 | 0 | 0 |
| .....................................................................................................................................................CTGCAGCCTGACACTTAGA................................ | 19 | 3 | 8 | 0.13 | 1 | 1 | 0 | 0 | 0 | 0 |
| .....................................................................................................................................................CTACAGCCTGACCTTGAA................................. | 18 | 2 | 9 | 0.11 | 1 | 1 | 0 | 0 | 0 | 0 |
| ........................................................................................................................................TTAGCTGCTTCTTCTAGA.............................................. | 18 | 2 | 10 | 0.10 | 1 | 0 | 0 | 0 | 1 | 0 |
| .....................................................................................................................................................CTGCAGCCTGACACTGACA................................ | 19 | 3 | 16 | 0.06 | 1 | 1 | 0 | 0 | 0 | 0 |
| ..................................................................................................TAAAGTGAGTATTTCAAA.................................................................................... | 18 | 2 | 18 | 0.06 | 1 | 0 | 0 | 0 | 0 | 1 |
| .................................................................................................................AAATTTAAAAGCAGAGAT..................................................................... | 18 | 2 | 18 | 0.06 | 1 | 0 | 0 | 0 | 1 | 0 |
| .....................................................................................................................................................CTACAGCCTGACATTG................................... | 16 | 2 | 20 | 0.05 | 1 | 1 | 0 | 0 | 0 | 0 |
Generated: 04/24/2015 at 02:31 AM