ID:

dsi_4536

 Coordinate:

2r:5270032-5270181 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-16.9 -16.9 -16.6

Flybase annnotation

CDS [2r_5269318_5270799_+]; exon [2r_5269289_5270926_+]

No Repeatable elements found

Sense Strand Reads

##########################################################################################################################################################################################################################################################
CCCAGCCGGAGTTGGCTAGGAAGTTGCGCTTCAGGCTTTTTCGTCCGGAGGTTAGTGAGTTCTTCTTGGATACGGTGCGCCAGACATTGGACTACAGACGACGGGAGAATATCCATCGCAACGACCTGATCCAACTGCTAATGGAACTGGGCGATGAGGGAGTCAAAGACGCGCTCTCCTTCGAGCAGATTGCGGCCCAGGCATTGGTCTTCTTTCTGGCCGGGTTCGACACCTCCTCCACCACCATGTC
****************************************************************************************.......((.((.((...((...((((((((.....((...((((........))))...)))))))).))...)).....)))))).************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M025
embryo
 M024
male body		 SRR618934
dsim w501 ovaries
 M023
head
 M053
female body
 SRR902009
testis
 SRR553488
RT_0-2 hours eggs
 SRR553485
Chicharo_3 day-old ovaries
.............................................................................................................................................................GGGAGTCAAAGACGCGCTC.......................................................................... 19 0 1 2.00 2 2 0 0 0 0 0 0 0
............................................................................................................................................................................GCTCTCCTTCGAGCAGATTGCGGCC..................................................... 25 0 1 2.00 2 2 0 0 0 0 0 0 0
.................................................................................................................................................................GTCAAAGACGCGCTCTCCTT..................................................................... 20 0 1 1.00 1 1 0 0 0 0 0 0 0
........................................................................................GGACTACAGACGACGGGAG............................................................................................................................................... 19 0 1 1.00 1 0 0 0 0 1 0 0 0
................................................................................CAGACATTGGACTACAGACGACGGGAG............................................................................................................................................... 27 0 1 1.00 1 0 1 0 0 0 0 0 0
....................................................TAGTGAGTTCTTCTTGGATACGGTG............................................................................................................................................................................. 25 0 1 1.00 1 0 0 1 0 0 0 0 0
...................................................................................................GTCGGGAGAACATCCATCGCAACGAC............................................................................................................................. 26 2 1 1.00 1 1 0 0 0 0 0 0 0
............................................................................................................................................................................GCTCTCCTTCGAGCAGATTGCGGC...................................................... 24 0 1 1.00 1 1 0 0 0 0 0 0 0
...............................................................................................................................................................................CTCCTTCGAGCAGATTGCGGCC..................................................... 22 0 1 1.00 1 0 1 0 0 0 0 0 0
.....................................TTTTCGTCCGGAGGTTAGTGAGTTCTT.......................................................................................................................................................................................... 27 0 1 1.00 1 0 1 0 0 0 0 0 0
...........................................TCCGGAGGTTAGTGAGTTC............................................................................................................................................................................................ 19 0 1 1.00 1 0 0 0 1 0 0 0 0
....................................................................................................................................................................................................CCAGGCATTGGTATTCT..................................... 17 1 1 1.00 1 0 0 1 0 0 0 0 0
....................................................................................CATTGGACTACAGACGACG................................................................................................................................................... 19 0 1 1.00 1 0 1 0 0 0 0 0 0
.................................................................................AGACATTGGACTACAGGCGTCGGGAG............................................................................................................................................... 26 2 1 1.00 1 0 1 0 0 0 0 0 0
..........GTTGGCTAGGAAGTTGCGCTTC.......................................................................................................................................................................................................................... 22 0 1 1.00 1 1 0 0 0 0 0 0 0
.....CCGGAGTTGGCTAGGAAGTTG................................................................................................................................................................................................................................ 21 0 1 1.00 1 0 0 0 0 0 1 0 0
..............................TCAGTCTTTTTCGTCGGG.......................................................................................................................................................................................................... 18 2 2 0.50 1 0 0 1 0 0 0 0 0
.........................................................................................................................................................................................CATATTGCGGCCCAGG................................................. 16 1 2 0.50 1 0 0 0 0 0 0 1 0
......TGAAGTTGGCTGGGAAGTTGC............................................................................................................................................................................................................................... 21 3 3 0.33 1 0 0 0 0 0 0 1 0
................................................................................................................................................................................................................GTTCTTGCTGGCCGGGTT........................ 18 2 12 0.08 1 0 0 0 0 0 0 1 0
.......GGAGATGGCTCGGAAGT.................................................................................................................................................................................................................................. 17 2 20 0.05 1 0 0 0 0 0 0 0 1

Anti-sense strand reads

GGGTCGGCCTCAACCGATCCTTCAACGCGAAGTCCGAAAAAGCAGGCCTCCAATCACTCAAGAAGAACCTATGCCACGCGGTCTGTAACCTGATGTCTGCTGCCCTCTTATAGGTAGCGTTGCTGGACTAGGTTGACGATTACCTTGACCCGCTACTCCCTCAGTTTCTGCGCGAGAGGAAGCTCGTCTAACGCCGGGTCCGTAACCAGAAGAAAGACCGGCCCAAGCTGTGGAGGAGGTGGTGGTACAG
**************************************************************************.......((.((.((...((...((((((((.....((...((((........))))...)))))))).))...)).....)))))).**************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553487
NRT_0-2 hours eggs
 SRR553486
Makindu_3 day-old ovaries
 SRR553488
RT_0-2 hours eggs
 SRR553485
Chicharo_3 day-old ovaries
 M023
head
 SRR618934
dsim w501 ovaries
......................................................................................AACCTGATGTCTGCG..................................................................................................................................................... 15 1 7 3.14 22 10 9 3 0 0 0
....................................................................................GCAACCTGATGTCTGCG..................................................................................................................................................... 17 2 13 2.54 33 12 9 4 8 0 0
....................................................................................GAAACCTGATGTCTGCG..................................................................................................................................................... 17 2 7 1.29 9 9 0 0 0 0 0
...................................................................................GGAAACCTGATGTCTGCG..................................................................................................................................................... 18 3 20 1.05 21 19 0 0 0 2 0
......................................................................................AACCTGATGTCTGCT..................................................................................................................................................... 15 0 1 1.00 1 1 0 0 0 0 0
....................................................................................GTAACCTGATGTCTCCT..................................................................................................................................................... 17 1 3 1.00 3 3 0 0 0 0 0
.....................................................................................TAACCTGATGTCTCCT..................................................................................................................................................... 16 1 3 0.33 1 1 0 0 0 0 0
......................................................................................AACCTGATGTCTCCT..................................................................................................................................................... 15 1 7 0.29 2 2 0 0 0 0 0
................................................................................................................................................................................AGGAAGCTCGGCTAAC.......................................................... 16 1 5 0.20 1 0 1 0 0 0 0
...................CCTCAACTCGATGTCCGAAA................................................................................................................................................................................................................... 20 3 5 0.20 1 0 0 1 0 0 0
.....................TCAACTCGAGGTCCGAAA................................................................................................................................................................................................................... 18 2 11 0.18 2 0 0 2 0 0 0
....................................................................................................................................................................TTGCTGCGCGAGAGG....................................................................... 15 1 6 0.17 1 0 0 1 0 0 0
.....................................................................................CAACCTGATGTCTGC...................................................................................................................................................... 15 1 6 0.17 1 0 1 0 0 0 0
.GGTCGGCCTCCACCGATG....................................................................................................................................................................................................................................... 18 2 8 0.13 1 0 0 1 0 0 0
.....................................................................................................................................TGACGTTTACCTTGACC.................................................................................................... 17 1 10 0.10 1 0 0 0 0 0 1
...........................................................AAGAATACCCTAGGCCACG............................................................................................................................................................................ 19 3 18 0.06 1 0 1 0 0 0 0
...................................................................................................................................................................CTTGCTGCGCGAGAGG....................................................................... 16 2 20 0.05 1 0 0 1 0 0 0
......................................................................................AACCTGATGTTTGCT..................................................................................................................................................... 15 1 20 0.05 1 1 0 0 0 0 0
....................................................................................................................................................................TTGCTGCGCGAGAGGG...................................................................... 16 2 20 0.05 1 0 0 1 0 0 0

Generated: 04/23/2015 at 12:03 PM