ID:

dsi_4523

 Coordinate:

3l:8250840-8250989 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-22.1 -22.0 -21.9

Flybase annnotation

intergenic

No Repeatable elements found

Sense Strand Reads

AAAATTGCCAAGTTCTATGGCCTCATTTTGCGACTGCTTTTGGTAGTAGTATCGCTAGTGGGGCATTGTTTTTTTTTTTTGCAGGGGGCTCCTTGCGCCCCAGCTGCTCAATTCTTCTGTTTGGTTCTTTCATTTTCTTTTCTTTGCTTAATCATCTCCCTCGTCTCGGCTCTCACCTACGTCATCTCTTCGCCTTCCAGCTGTGTTTGTGCAAATTAACCAAAATATACATTTCCGGCTACTCGCTGCC
**************************************************...((...((((((................((((((....))))))))))))...)).........(((...(((.....((............))...............(((...((......)).)))..........)))...)))************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553488
RT_0-2 hours eggs
 M024
male body		 M025
embryo
 M053
female body
 O002
Head
 SRR553486
Makindu_3 day-old ovaries
 GSM343915
embryo
 SRR618934
dsim w501 ovaries
.....................................................................................................................................................AATCATCTCCCTCGTCTCGGCTC.............................................................................. 23 0 1 1.00 1 0 0 1 0 0 0 0 0
.................................................................................................................................................................................................................TGCAAATTAACCAAAATATACA................... 22 0 1 1.00 1 0 0 0 1 0 0 0 0
.......................................................................................................................................................................................ATCTCTTCGCCTTCCAGCTGTTT............................................ 23 1 1 1.00 1 0 1 0 0 0 0 0 0
....................................................................................................................................................................................................................AAATTAACCAAAATATAC.................... 18 0 1 1.00 1 0 0 0 0 1 0 0 0
.........................................................................................................................................................................................................TGTATTTGTGCAAATTTAACAAAA......................... 24 3 3 0.67 2 1 0 0 0 0 1 0 0
.................................................................................................................................................................CGTCTCGGCTCCCACC......................................................................... 16 1 3 0.67 2 2 0 0 0 0 0 0 0
...................................................................................................................TCTGTTCGGTTATTTCTTTTTCTTT.............................................................................................................. 25 3 3 0.33 1 0 0 0 0 0 1 0 0
......................................TTGGGTAGTAGTATC..................................................................................................................................................................................................... 15 1 4 0.25 1 1 0 0 0 0 0 0 0
...........................................................................GTTTTGCATGGGGCTCCTT............................................................................................................................................................ 19 2 4 0.25 1 0 0 0 0 0 0 1 0
..................................................................................................................................................................................ACGTCATATCTTCGC......................................................... 15 1 8 0.13 1 0 0 0 0 0 1 0 0
...................................GCTCTTGGTAGTAGCA....................................................................................................................................................................................................... 16 2 20 0.05 1 0 0 0 0 0 0 0 1
........................................................................................................................................................................................TCTCTTCGCCCTCCA................................................... 15 1 20 0.05 1 1 0 0 0 0 0 0 0

Anti-sense strand reads

TTTTAACGGTTCAAGATACCGGAGTAAAACGCTGACGAAAACCATCATCATAGCGATCACCCCGTAACAAAAAAAAAAAACGTCCCCCGAGGAACGCGGGGTCGACGAGTTAAGAAGACAAACCAAGAAAGTAAAAGAAAAGAAACGAATTAGTAGAGGGAGCAGAGCCGAGAGTGGATGCAGTAGAGAAGCGGAAGGTCGACACAAACACGTTTAATTGGTTTTATATGTAAAGGCCGATGAGCGACGG
**************************************************...((...((((((................((((((....))))))))))))...)).........(((...(((.....((............))...............(((...((......)).)))..........)))...)))************************************************** 		Read size # Mismatch Hit Count Total Norm Total M024
male body		 SRR553485
Chicharo_3 day-old ovaries
 M025
embryo
 M053
female body
 GSM343915
embryo
 SRR618934
dsim w501 ovaries
 SRR553487
NRT_0-2 hours eggs
 M023
head
 SRR902009
testis
..............................................................................................CGCGGGCTCGACGAATTA.......................................................................................................................................... 18 2 3 1.00 3 3 0 0 0 0 0 0 0 0
.........................................................................AAAAAAACGTCCCCC.................................................................................................................................................................. 15 0 1 1.00 1 0 1 0 0 0 0 0 0 0
........................................................................................................................................................................CGAGAGTGGATGCAGTAGAGA............................................................. 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0
..............................................................................................CGCGGGCTCGACGAATTAA......................................................................................................................................... 19 2 2 1.00 2 1 0 1 0 0 0 0 0 0
.............................................................................................................................................................GGGAGCAGAGTGGAGAGTGCA........................................................................ 21 3 2 0.50 1 0 0 0 1 0 0 0 0 0
........................................................................................................ACGAGCTACGAAGACAAACC.............................................................................................................................. 20 2 2 0.50 1 0 0 0 0 1 0 0 0 0
..............................................................................................CGCGGGCTCGACGAATTAAA........................................................................................................................................ 20 3 9 0.22 2 0 1 0 0 0 0 0 1 0
.......................................................................................................................................................................CCGAGAGTGGAGGCA.................................................................... 15 1 6 0.17 1 0 0 0 0 0 0 1 0 0
...............................................................................................GCGGGGTCAACGAGTT........................................................................................................................................... 16 1 7 0.14 1 0 0 0 0 0 1 0 0 0
...................................................................................................................................................................AGAGGCGAGAGTGGATGCA.................................................................... 19 1 8 0.13 1 0 0 0 0 0 1 0 0 0
............................................................................................................................................................................................AAGAGGCAGGTCGACACATA.......................................... 20 3 10 0.10 1 0 0 0 0 0 0 0 0 1
................................TGGCGAATGCCATCATCAT....................................................................................................................................................................................................... 19 3 13 0.08 1 0 0 0 0 0 1 0 0 0
......................................................................................................................................................................CCCGGGAGTGGATGCA.................................................................... 16 2 19 0.05 1 0 0 0 0 0 1 0 0 0

Generated: 04/24/2015 at 10:47 AM