ID:

dsi_4519

 Coordinate:

3l:2532233-2532449 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-24.0

Flybase annnotation

intergenic

No Repeatable elements found

mature
star
  1. dsi_4519  3l:2532366-2532381 +
  2. node_68621:83-98 +

Sense Strand Reads

TTGACAGCGCCGCTCTAAGATGTGTTTCTAAAACTCCTGGGTCACATCGTGCAAGTCCTTGGAATATATTTAAACTAATTGATACAAATTTGAGTCATGAAGGCTCAAAATATTATCATTAATTTGAAATAAGAGTTATATTTTGTTGAAGTTGTGGCTTAGCCGCTGAGTACTTCTTAAAAGTCAATCTCACTTGAAAACTACAATCATATACGTGCATTCTTATATTTAAGATCTGAGGAGGGATCTTTAAACTGAATTATCCAGTGATTTTTTTTGGAGTGCCGAATCAGTGGAGCTGGACAACAAACAGAATA
******************************************************************************.(((((....((((((((.....))))))))....)))))..............(((....(((((...(((((.(((((...))))).....)))))...)))))....)))........********************************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553485
Chicharo_3 day-old ovaries
 M053
female body
 M024
male body		 M025
embryo
 SRR902008
ovaries
 SRR553486
Makindu_3 day-old ovaries
 SRR618934
dsim w501 ovaries
 SRR553488
RT_0-2 hours eggs
 SRR553487
NRT_0-2 hours eggs
 SRR902009
testis
.......................................................................................ATTTGAATCATGAAGGCT.................................................................................................................................................................................................................... 18 1 2 3.50 7 0 1 3 3 0 0 0 0 0 0
................................................................................................................................................................................................................................................................................TTTTTTGGAGTGTCGAATCAGTGGAGC.................. 27 1 1 3.00 3 3 0 0 0 0 0 0 0 0 0
......................................................................................AATTTGAATCATGAAGGC..................................................................................................................................................................................................................... 18 1 2 2.50 5 0 3 2 0 0 0 0 0 0 0
..................................................................................................................................................................................................................................................................................TTTTGGAGTGTCGAATCAGTGGAGC.................. 25 1 1 2.00 2 2 0 0 0 0 0 0 0 0 0
......................................................................................AATTTGAATCATGAAGGCT.................................................................................................................................................................................................................... 19 1 2 2.00 4 0 1 1 2 0 0 0 0 0 0
....................................................................................................................................................................................................................................................................................TTGGAGTGTCGAATCAGTGGAGCTGGA.............. 27 1 1 2.00 2 2 0 0 0 0 0 0 0 0 0
..............................................................................TTGATACAAATTTGAGTCATGAAGGCT.................................................................................................................................................................................................................... 27 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................................................................................TTTGGAGTGTCGAATCAGTGGAGCTG................ 26 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................................................................................................AGTGGAGCTGGACAACAAACAGAATA 26 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0
.....................................................................................................................................................................................................................................................................................TGGAGTGTCGAATCAGTGGAGCTGGA.............. 26 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0
..............................................TCGTGTTAGTCCTTGGAATATATT....................................................................................................................................................................................................................................................... 24 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.........................................................................................TTGAGTCATGAAGGGTAAAAA............................................................................................................................................................................................................... 21 2 1 1.00 1 0 0 0 0 0 0 1 0 0 0
........................................................................................................................................................................................................................................................................................AGTGCCGAATCAGTGGAGCTG................ 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................................................................................TTTTTTTTTGGAGTTTCGAATCAGTGGAGC.................. 30 3 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................................................................................TGGAGTGCCGAATCAGTGGAGCTGGA.............. 26 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0
.................................................................................................................................................................................................................................................................................................TCAGTGGAGCTGGACAACAAACAGAA.. 26 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0
..........................................................................................TGAGTCATGAAGGCT.................................................................................................................................................................................................................... 15 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................TCAATCTCACTTGAAA...................................................................................................................... 16 0 2 0.50 1 0 0 0 0 0 0 0 1 0 0
.......................................................................................ATTTGAGTCATGAAGG...................................................................................................................................................................................................................... 16 0 3 0.33 1 0 0 0 0 0 1 0 0 0 0
...............................................................................................................................................................................................................................................................TGGATTATCCTCTGATTTTTTTT....................................... 23 3 3 0.33 1 1 0 0 0 0 0 0 0 0 0
..........................................................................................TGAGTGATGAAGGCT.................................................................................................................................................................................................................... 15 1 17 0.18 3 1 0 0 0 0 2 0 0 0 0
.......................................................................................................................................................................................TCAATCTCACTTGTA....................................................................................................................... 15 1 20 0.15 3 0 0 0 0 0 0 0 3 0 0
..........................................................................................................................................................................................................................................CCTGCGGAGGGATCTTTA................................................................. 18 2 8 0.13 1 0 0 0 0 0 0 0 1 0 0
.......................................................................................ATTTGAATCGTGAAGGCT.................................................................................................................................................................................................................... 18 2 9 0.11 1 0 0 0 1 0 0 0 0 0 0
...............................................................................................................................................................................................................................................................TGAATGATCCAGTGA............................................... 15 1 9 0.11 1 0 0 0 0 0 0 0 0 1 0
...........................................................................................................................................................................................................................................CTGCGGAGGGATCGTTA................................................................. 17 2 12 0.08 1 0 0 0 0 0 0 0 0 1 0
...........................................................................................................................................................................................................................................................AGACTGAATTATCCTGAGA............................................... 19 3 16 0.06 1 0 1 0 0 0 0 0 0 0 0
............................................................................................................................TGAAATAAGAGTTAAA................................................................................................................................................................................. 16 1 17 0.06 1 0 0 0 0 0 0 0 0 1 0
................................................................................................................................................................................................................................................................................TTTTTTGGAGTGCTGGTTCA......................... 20 3 17 0.06 1 0 0 0 0 0 1 0 0 0 0
.................................................TGCAAGTCCTTGGGA............................................................................................................................................................................................................................................................. 15 1 20 0.05 1 0 0 0 0 0 0 0 1 0 0
................................................................................................................................TTAAGAGATATACTTTGTTG......................................................................................................................................................................... 20 3 20 0.05 1 0 0 0 0 0 0 0 0 0 1

Anti-sense strand reads

AACTGTCGCGGCGAGATTCTACACAAAGATTTTGAGGACCCAGTGTAGCACGTTCAGGAACCTTATATAAATTTGATTAACTATGTTTAAACTCAGTACTTCCGAGTTTTATAATAGTAATTAAACTTTATTCTCAATATAAAACAACTTCAACACCGAATCGGCGACTCATGAAGAATTTTCAGTTAGAGTGAACTTTTGATGTTAGTATATGCACGTAAGAATATAAATTCTAGACTCCTCCCTAGAAATTTGACTTAATAGGTCACTAAAAAAAACCTCACGGCTTAGTCACCTCGACCTGTTGTTTGTCTTAT
**********************************************************************************************************************.(((((....((((((((.....))))))))....)))))..............(((....(((((...(((((.(((((...))))).....)))))...)))))....)))........****************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M024
male body		 GSM343915
embryo
 M023
head
......................................................CAGGAACCTTATATAAATTTG.................................................................................................................................................................................................................................................. 21 0 1 1.00 1 1 0 0
............................................................................................................................................................................GAAGAATTTTCAGTTAGAGTG............................................................................................................................ 21 0 1 1.00 1 0 1 0
.......................................CCAGTATAGCATGTTCAGA................................................................................................................................................................................................................................................................... 19 3 16 0.06 1 0 0 1
...............................................................................................................................................................................CAAGTTTCAGTTAAAGTGAA.......................................................................................................................... 20 3 20 0.05 1 1 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 3l:2532183-2532499 + dsi_4519 TTGACAGCGCCGCTCTAAGATGT----GTTTC-TAAAACTCCTGGGTCACATC-----------------------------GTGCAAGTCCTTGGAATA--TATT--------T--AA-ACTAATT------GATACA--AATTT-G---AGTCATGAAGGCTCAAAATATT-ATCATT-AATTTG-----AAATAA-GAGTTATATT-TTGT------------------TG---------------------------------------------AAGTTGT-----------------------------------------------------------------------------------------------------------------------GGCTTAGCCG-------------------------------CTGA----G------------------------------------------------------------------TACTTCTT--------------------------AA------------------------------AAGTCAA----------------------------------------------------TCTCACT---------------------------------------------TGA-AAACTACAATC----------------ATATACGTGCATTCTTATATTTAAGA-TCTGAG-GAG-------------------------------GGA-------T-C-TTTAAA-------CTGAATTATCCAG-----------------TGATT--TTTTTTGGAGTGCCG--AATCAGTGGAG--CT--GGACAACAAACAGA--AT----A
droSec2 scaffold_2:2670798-2671126 + TTGACAGCGCCGCTCTAAGATGT----GTTTC-TAAAACTCCTGGGTCACATC-----------------------------GTGTAAGTCCTTGGAATA--TATT--------T--AA-ACTAATT------GATACA--AATTT-G---AGTCATGAAGGCTTAAAATATT-ATCATT-AATTTG-----AAATAA-GAGTTATATT-TTGA------------------TG---------------------------------------------ATTTTGTGATAACT-------------------------------------------------------------------------------------------------------TGAT-GGAAGGCTTAGCCG-------------------------------CTGA----G------------------------------------------------------------------TACTTCTT--------------------------AA------------------------------AAGTCAA----------------------------------------------------TCTCACT---------------------------------------------TGA-AAACTACTTTC----------------ATATACGTGCATTCTTATGTTTAAAA-TCTTAG-----------------------------------TGA-------T-C-TTTAAA-------CTGAATTTTCCAG-----------------TGATT--TTTTATGGAGTGCCG--AATCAGTGGAG--CT--GGACAACAAACAGA--AC----A
dm3 chr3L:2644870-2645179 + TTAACAGCGCCGCTCTAAGATGT----GTTTT-TAAAACTCCTGGGTCACATC-----------------------------ATGTAAGTCCTTGGAATA--TATT--------T--AA-ACTAATT------GATACA--AATTT-G---AGTGATGAAGGCTCAAAATATT-ATCATT-AATTTG-----AAAGAG-GAGTTATATT-TTGA------------------TG---------------------------------------------AAGATGTGTTAACT-------------------------------------------------------------------------------------------------------AGAT-AGAAGGATTATGCG-------------------------------CTGA----G------------------------------------------------------------------TATG-----------------------------------------------------------------------ATT---------------------------------------------TATCTCACT---------------------------------------------TGA-AAACTACACTC----------------AT-----TGCATTCCTATATTTTAGA-TCTGAG-----------------------------------GAA---------T--------------------GGTCCAG--TGT--TC-----CAG-AGAT--TTTTTTACAGTGTCG--AATAAGTGAAG--CT--GGACAACAAACAGA--AC----A
droEre2 scaffold_4784:2664228-2664564 + TTAAT--------------ATGT----CTTTC-TAAAACTCCTGGGTCACATC-----------------------------AAGTAAGTCCTTGGAATA--TATT--------T--AA-ACTAATT------GAGAAA--AATTT-A---AATCGTGAAGGCTCAAAATATT-ATCATT-AATTTG-----CAATAG-GAATTATATT-TGGA------------------CC---------------------------------------------AATACATGATAACT-----------------------------------------------------------------------------------------ATGTATGT------AGTT-AGAAGGTTTAGGAG-------------------------------CCGA---TGTA------------------------------------------------------CTTTTAAAAATACTTTTA--------------------------AA------------------------------AACTCAATGACC---------------------------------------------T-TTTTATT---------------------------------------------TGA-AAACTACATTC----------------ATATA-------TCTTACATTTAAGA-TCTTAC-----------------------------------AGA-------G-C-GGTAAA-------ATGAATTTTCCAG-----------------CGATTTTTTTTCTACAGTGTCG--AATCAGTGGAG--TT--GGACAACAAACAGA--AC----A
droYak3 3L:9290834-9291174 - TAAAAAGCGCCACTCTAAGATGT----GTTTC-TAAAACTCCTGGGTCACAGC-----------------------------ATGTAAGTCCTTGGAATA--TATT--------T--CA-ACTAATT------GAAGTA--AACTT-G---AATCATGAAGGCTCAAAGTATT-ACCATT-AATTTA-----CAATAA-GAATTATATT-TGGA------------------TG---------------------------------------------CAGATATGATAACT-------------------------------------------------------------------------------------------------------AGAT-AGAAGGTTTAGGCG-------------------------------ACG------TA------------------------------------------------------T---------TAATTATA--------------------------AA------------------------------AAGTCAATGACT---------------------------------------------TATCTCTTT---------------------------------------------TGA-AAACTAGTTTC----------------ATCTA----TATACTTATATTTAAGA-TCTTAG-----------------------------------GGA-------T-T-GATAAT-------TTGAATTTTCCAGCAA-T--TC-----CAG-ATTT--TTTCTTGCAGTGTCG--AATCCGTGGAG--CT--GGACAACAAACAGA--AC----A
droEug1 scf7180000409466:371923-372279 + TTAGTATCGGCGCTTTCAGATCT----GCCTC-TAAAACTCCTGGGTCATAT------AGCACCTTTG--GCGCTCTGTTATTGCTATATCCTTGGAATA--TATTTAAGTTTT---AA-ACTAATT------TAACTGCCAATC----AGCAAAACGAAGGTTTTAACTATT-AACATC-AATTTT-----CA-----------TATT-TGGA------------------GC---------------------------------------------A-AATT--------------------------------------------------------------------------------------CT-----AGTCAAGTAATT------AGATTAGATAATTCAGGAGAAATCAA-CAATTTTGTTTGC--ATAATT--AT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------TTATTTTTTAATAAAGGAAACCCTTT-----TCTGTCA---------------------------------------------TGAAAAAATACA--C----------------A------------------------------------------------TTTAGGTAT---------TA-A-----------------------------TTCTCCTT--TTC--TT-----GCC-ACTT--TTTTTTACAGTGTCA--AA-CTTGGGAG--TC--TGACAACAAACAGA--GC----T
droBia1 scf7180000302428:9424773-9425155 + TCAACAGCGGAGGTCTCAGGTGT----GTCTC-AAAAACTCCTGGGTCACA-------AGCACATTTC--ACGCTCTCCAATTTATAGATCCTTGGGATA--TATTTAAGTCTG---TG-ACTAATT------GAACTG--AATTG-GCAGCGAAATGAAGGCTTAAAAAATT-ATCGTT-CATTTA-----GA-----------TATT-TAGA------------------AA---------------------------------------------ATTATG---------------------------------------------------------------TTTTAATAT------AATGATTTCATTTGTTAATTTAAATTTAAAAAAATGTTAGAATTTTAAGCGAAAGTAAAACAATTT--TTTGTATAAGATTATAT------------------------------------------------------------------------------------------------GATTGTATTTT----------------------------------AA-T-----GT----------------------------------------------------------------------------------------------------------TTTATAT----------------AT------GTATCATTAAGTTTTAA---------------------------------------------ATTTATAATTTTGT--------------------TCGT--TTT--TT-----CCA-AATC--TTTTTTCCAGTGTCG--AATCTTAGGAG--TT--GGCCAACAAACAGA--GC----A
droTak1 scf7180000415857:444447-444835 + TTAACAGCGGCGCTTTCAAATGA----GTCTT-AAAAACTCCTGGGTCATAT------AGCACATTTGAGACGCTCTCCAATTAGTAAATCCTTGGGATA--TATTTAAGTTTC---AA-ACTAATT------GATCTG--AATTC-GCAGAAAATTGAAGGCTTAAAATATT-ATCATT-AATTAG-----GT-----------TTTT-GGGA-------------------G---------------------------------------------AAAATG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGTTTTTAAA--------TGGATGGCTCTATATAAAATAAAACGTTTTGTTTTTAATGATTTATTAAACTGTA------TTATAAAGAAT-TATTATATTTTT----------------------------------------------ATTAGAAGGAAAAATAAGAA-----------CAGTGTAAACTTTAAT------AAATGTTT-----------------------------------------AAA-----------------------T----TT---------GGAAAA---------T-GT-TCC-------TTGATTTT---------T--TT-----ACG-ATTT--TTTTTTACAGTGTCG--AATCTCAGGAG--TT--GGCCAACAAACAGA--AC----A
droEle1 scf7180000491249:2732459-2732882 - TCAACAGCGACGCTTTCAGCTGTCTGTTTTTG-AAAAACTCCTGGGTCATAGTCATATAGCATATTTT--ACGCTCTCCAATTTATAAATCCTTGGTATA--TATTTAAATTGT---TG-ACTAACT------GTGCTG--AATTC-GCTGCCACGTGAAGGCCTTAAATATT-ATCATT-AATTTG-----TT-----------TATT-TGGG------------------TT-----------------------------------------------------------------------------------------TGAATATTAAACGGCAAAGAAGATGTTCTAACGTCAGAGAAGTGATTTCGATTGTAAGCTGGTAATT-----------AAATGTCGCAGCGGAAGTGGA-ATTTTT--TTTGAAAATAATA--AT-A----G------------------------------------------------------------------TACGTAGT--------------------------AA------------------------------AAAT---------------------------------------TCAAGTCTTTC---TATCTCACT---------------------------------------------TAA-AAAATATGTAA----------------A------------------------------------------------T----TTAT---------TT-C------------AGATC-------CCGAATTCCCCTT--TTTTGTT------A--ACTTCTTTTTTGGCAGTGTCA--TAAGTTTGGAG--TT--GGCCAACAAACAGA--AC----A
droRho1 scf7180000758401:16842-17272 - TCAACAGCGACGCTTTCAGGTGT----GTTTT-AAAAACTCCTGGGTCATAT------AGCACATTTT--ACGATCTCCAATTTGTGAATCCTTGGGATA--TATTTACAATTT---TA-ACTAATT------GAACTA--AATTC-ACTGCCACGTGAAGGCTTAAGATATT-AGCATT-AATTTG-----GA-----------TATT-TGAATCAAA-----------------------------------------------------------------------------------------------------------------AACTGCAGTGAAGATGTTCTAACGTCAGAAAAGTGTTTTCGAATTAAGTCAGATAATT------AGATTAGATGTTAAAGCGGAAATATA-CTGTTT--TTAGAAGATGATG--AT------------------------------------------------------------------------------------------------GAATGTGATTT----------------------------------AT-T-----ATTATA----------------------------------------------ATTATAAGAAATTTTAATGA-----------AAGTGTCATCTCAAAT--TA------------------------AATTA------------------TTATAAA-----------------------T----TT---------GCTGAATTTGT-ATTTTCT--------------------TCCA--TTT--TT------AGAGCTTCTTTTTTGCCAGTGTCG--AAATTTCGGAG--CT--GGACAACAAACAGA--AC----A
droFic1 scf7180000454105:971849-972268 + TTGACAGCGACGCTTTCATATGT----GATTC-AAAAACTCCTGGGTCATAA------AGCACATTTT--ACGG--------TTGGTAATCCTTGGAATAGATATTTATATT--T--TA-ACTAATT------GAACTG--AATTC-GTGAAGCCATGAAGGTTTAAAGTATT-ATCACTTAATTTA-----TT-----------TATAATGACTGAAA-----------------------------------------------------------------------------------------------------------------AACTGCAGATAGGAT-TTCTAGCATGAAGAA-----TTCCA-----AATCAAATAA-------------------CCCGATACAAATCGG-A------------------TA--AC-AGAACGGATAAAAACTATTTAGTAGAGCTCTCCTGTTTTTAGAAAGAAGTTCGATCTTTAAA--------AATATATTTCTATATTATATAAA--------------------------------------------------------------------------------------------------------------------------------------------------------------------T----------------------A------------------------------------------------T----TTATTTTGTTTGTTA-A------ATTTCAT---TTGGTTTTTCGCATTTT--------T--TTATGAAACG-ATAA--TTTTTCCCAGTGTCG--AAGCTTTGGAG--AT--GAGCAGCAAACAGA--AC----A
droKik1 scf7180000302441:1059790-1060267 - TTAACAGCGGCGCTTTCAGCTTT----GACTCGAAAAACTCCTGGGTCATAGCCACA-CACACATTAG--ATTCTCTTAAATTTGTTAATCCTTGGAATA--TATTTATGTTTT---TAATCTAATTAAATTTGATATA--AGTC----AGCGAAGCGAAGGTTAAGCAAATTAATCATT-AATTTA-----AAGCAAAGAATGG-----TGGG------------------AA---------------------------------------------AAGACTTGTTGGTTATCTTAAAAAATTAAATTTTTAATTGGGTTTTATTTTTTTAAAGCATTAAAGTTTTCCT------------------------------------------------------------C----------------------------------------------------------------------------------------------------------------------TATA--AAAAGATGCTTTTATTTAAATAATTTTCCATATTAAATTTATATTTTCT---------------------------------------------AAAACCCTTTCACTATCTC-------------------------------------------CAACTTA-----CAGTTCAAATTTGCAAATAAAATCA------------------TTTAAAGTTCTC-GGAAAAAAGCTAACATATTTATTTAT---------TT-T------------TTATC-------CAGAATTTT-----------TT------AGACCTT--TTTCCCTCAGTGTCG--GAACTTTGGTT--ATCCGGCAAACAAACAGAGAAC----C
droAna3 scaffold_13337:9436331-9436687 - TTGGGAGCGGTGCTTTAAGATCT----GTACACAAAAACTCCTGGTTCATGC------AGCT-------------CGGCGGTTTGTTAATCCTTGGAATA--TATT--------TTCCA-ACTAATT------GAACTA--ATTTT-GCAGCCG-CTGAAGGCTTTAATTTTT-AACATT-TTT-AGTCATGG--------------------A------------------CTAATAGATCACAAAAAGATCTGATCT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTAAAGTTTTGACAATATTTTTA--------------------------GATGATCTGTGGAATAATA------TTCTATTAGAT-TATCTTATCTTTGGGGTAACAATTC-----------------------------------------------ATATAGTATTTTAAGAACC----------------------------------------------------------CCCTAAGTATTA----------------------------------------------GCTCATGA---------------------T----------TTTGGTT------CGTGCTT--TTTTTCTTAGTGTCTTAGAGCTTTAGTT--GC--GGCCGAGAGGCTCA--CCCTATG
droBip1 scf7180000396544:247451-247749 - TTGGGAGCGGTGCCTTAAGATCT----GTACCACAAAACTCCTGGGTCATGC------AGC-------------TTGGTGGTTTGTTAATCCTTGGAATA--TATT--------TTCCA-ACTAATT------GAACTA--ATTTT-GCAGCC-GATGAAGGCTTAAATTATT-AACATT-TTT-AGTCATGGT------AGA-------TAAATCAAA--------------------------AATAGATGTCAGCTTTTGGGAGTAGAATG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTAATAGTTC-----------------------------------------------ATATAATATTTAAAGAACT----------------------------------------------------------CCCTAAATATTA----------------------------------------------ACTCATGA---------------------T----------TTTGGTT------CGTGCTT--TTTTTCTTAGTGTCT--GAGCTTTGGAT--GC--GGCCGAGAAGCCCA--CCCT--A
dp5 XR_group3a:1292718-1292987 - AAA-T-ACAAATTTTTTGTTTTT----TTTTT-TTAAATTCCTGCCTCAAGC------TTCACTGC----TGCTTCTCTAGTCTGGGAATCCTTGGTATA--CATT--------T--CG-ACTAATT------GAACTC--ATTTTTCTAGCCTCACGAAGGTTCAATATCTT-ACCATT-AATTTG-----GT-----------AGGT-TCAACCGAGCATTACCCTTGAAGC--------------AGAATATAATTTTAAGCAATAATAGAGGGAG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AG-------------------------------------------------AATAGAATAATTTAAGGG------------------------------------------------------------------------------------A---------------------------------------GAA-C------------------------------T---------------------------TGGCGCCG--GCTTGGTGAGGCATT--GGCCATTGGGCAT----------
droPer2 scaffold_23:1324500-1324751 - AAA-T-ACAAATTTTTTATT-------TTTTT-TTAAATTCCTGCCTCAAGC------TTCACTGC----TGCTTCTCTAGTCTGTGAATCCTTGGTATA--CATT--------T--CG-ACTAATT------GAACTC--ATTTTTCTAGCCTCACGAAGGTTCAATATCTG-ACCATT-AATTTG-----GT-----------AGGT-TCAACCGAGCATTACCCTTGAAGC--------------AGAATACAATTTTAAGCAATAATAGAGGGAG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AG-------------------------------------------------AATATAATAATTTAAGGG------------------------------------------------------------------------------------A---------------------------------------GAA-C------------------------------T---------------------------TGGCGCCG--GCTTGGT---------------------GAG--GC----A

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
TTGACAGCGCCGCTCTAAGATGT----GTTTC-TAAAACTCCTGGGTCACATC-----------------------------GTGCAAGTCCTTGGAATA--TATT--------T--AA-ACTAATT------GATACA--AATTT-G---AGTCATGAAGGCTCAAAATATT-ATCATT-AATTTG-----AAATAA-GAGTTATATT-TTGT------------------TG---------------------------------------------AAGTTGT-----------------------------------------------------------------------------------------------------------------------GGCTTAGCCG-------------------------------CTGA----G------------------------------------------------------------------TACTTCTT--------------------------AA------------------------------AAGTCAA----------------------------------------------------TCTCACT---------------------------------------------TGA-AAACTACAATC----------------ATATACGTGCATTCTTATATTTAAGA-TCTGAG-GAG-------------------------------GGA-------T-C-TTTAAA-------CTGAATTATCCAG-----------------TGATT--TTTTTTGGAGTGCCG--AATCAGTGGAG--CT--GGACAACAAACAGA--AT----ASizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
.............................................................................................................................TT------GATACA--AATTT-G---AGTCATGAAGGCT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00100000010000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTGGAG--CT--GGACAACAAACAGA--AT----A2611.00100000000000010000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTGCCG--AATCAGTGGAG--CT--G......................2111.00100010000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGAGTGCCG--AATCAGTGGAG--CT--GGA....................2611.00100000001000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAGTGGAG--CT--GGACAACAAACAGA--A......2611.00100000000000010000
.................................................................................................................................................T-G---AGTCATGAAGGCT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1511.00100000010000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAA----------------------------------------------------TCTCACT---------------------------------------------TGA-AA......................................................................................................................................................................................................................1620.50100000000010000000
..............................................................................................................................................ATTT-G---AGTCATGAAGG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1630.33100000001000000000
droSec2
TTGACAGCGCCGCTCTAAGATGT----GTTTC-TAAAACTCCTGGGTCACATC-----------------------------GTGTAAGTCCTTGGAATA--TATT--------T--AA-ACTAATT------GATACA--AATTT-G---AGTCATGAAGGCTTAAAATATT-ATCATT-AATTTG-----AAATAA-GAGTTATATT-TTGA------------------TG---------------------------------------------ATTTTGTGATAACT-------------------------------------------------------------------------------------------------------TGAT-GGAAGGCTTAGCCG-------------------------------CTGA----G------------------------------------------------------------------TACTTCTT--------------------------AA------------------------------AAGTCAA----------------------------------------------------TCTCACT---------------------------------------------TGA-AAACTACTTTC----------------ATATACGTGCATTCTTATGTTTAAAA-TCTTAG-----------------------------------TGA-------T-C-TTTAAA-------CTGAATTTTCCAG-----------------TGATT--TTTTATGGAGTGCCG--AATCAGTGGAG--CT--GGACAACAAACAGA--AC----ASizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCG--AATCAGTGGAG--CT--GGAC...................2111.0011000
.................................................................................................................................................................................................................................................................................................AACT-------------------------------------------------------------------------------------------------------TGAT-GGAAGGCTTAGCCG-------------------------------CTGA----................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010010
..........................................TGGGTCACATC-----------------------------GTGTAAGTCC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010100
.............................................................................................................................................AATTT-G---AGTCATGAAGGC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010010
dm3
TTAACAGCGCCGCTCTAAGATGT----GTTTT-TAAAACTCCTGGGTCACATC-----------------------------ATGTAAGTCCTTGGAATA--TATT--------T--AA-ACTAATT------GATACA--AATTT-G---AGTGATGAAGGCTCAAAATATT-ATCATT-AATTTG-----AAAGAG-GAGTTATATT-TTGA------------------TG---------------------------------------------AAGATGTGTTAACT-------------------------------------------------------------------------------------------------------AGAT-AGAAGGATTATGCG-------------------------------CTGA----G------------------------------------------------------------------TATG-----------------------------------------------------------------------ATT---------------------------------------------TATCTCACT---------------------------------------------TGA-AAACTACACTC----------------AT-----TGCATTCCTATATTTTAGA-TCTGAG-----------------------------------GAA---------T--------------------GGTCCAG--TGT--TC-----CAG-AGAT--TTTTTTACAGTGTCG--AATAAGTGAAG--CT--GGACAACAAACAGA--AC----ASizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTTACAGTGTCG--AATAAGTGAAG--C..........................2617.0070000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000400000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TC-----CAG-AGAT--TTTTTTACAGTGTCG--AA......................................2617.0070000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000501000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T--TC-----CAG-AGAT--TTTTTTACAGTGTCG--AA......................................2713.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000300000
.TAACAGCGCCGCTCTAAGATGT----GTT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2513.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000201000
...............................................................................................................................................................................................................................................................................................................................................................................................................T-AGAAGGATTATGCG-------------------------------CTGA----G------------------------------------------------------------------TATG-----------------------------------------------------------------------ATT---------------------------------------------..................................................................................................................................................................................................................................................................................2713.0030000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCCTATATTTTAGA-TCTGAG-----------------------------------GAA---------T--------------------GG......................................................................................2713.0030000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T--TTTTTTACAGTGTCG--AATAAGTGAAG--C..........................2813.0030000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000
TTAACAGCGCCGCTCTAAGATGT----GTC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2612.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000100000000000000000000000000
TTAACAGCGCCGCTCTAAGATGT----G..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2412.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000
................................................................................................................................................................................................................T-TTGA------------------TG---------------------------------------------AAGATGTGTTAACT-------------------------------------------------------------------------------------------------------AGAT-A....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2612.0020000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTTTACAGTGTCG--AATAAGTGAAG--C..........................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTTTACAGTGTCG--AATAAGTGAAG--CT--.......................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
............................................................................................................................................................................T-ATCATT-AATTTG-----AAAGAG-GAGTTATA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................TT-AATTTG-----AAAGAG-GAGTTATATT-T...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TG-----------------------------------------------------------------------ATT---------------------------------------------TATCTCACT---------------------------------------------TGA-AAACTACAC...............................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCAG--TGT--TC-----CAG-AGAT--T........................................................1911.0010000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................TATATT-TTGA------------------TG---------------------------------------------AAGATGTGT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................TG-----AAAGAG-GAGTTATATT-TTGA------------------TG---------------------------------------------AAGA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000
.............................................................................................................................................AATTT-G---AGTGATGAAGGCTCA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G--AATAAGTGAAG--CT--GGACAACAAACAGA--A......2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................ATATT-TTGA------------------TG---------------------------------------------AAGATGTGTTA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000
...................................................TC-----------------------------ATGTAAGTCCTTGGAATA--TATT--------T--AA-AC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....CAGCGCCGCTCTAAGATGT----G..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAGTGTCG--AATAAGTGAAG--CT--GGACA..................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATG-----------------------------------------------------------------------ATT---------------------------------------------TATCTCACT---------------------------------------------TGA-AAACTACACT..............................................................................................................................................................................................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................TGTGTTAACT-------------------------------------------------------------------------------------------------------AGAT-AGAAGGA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................TG---------------------------------------------AAGATGTGTTAACT-------------------------------------------------------------------------------------------------------AGAT-A....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000
.............................................................................................................................TT------GATACA--AATTT-G---AGTGATGAAGGC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
.........................................................................................................................................................................................TG-----AAAGAG-GAGTTATATT-TTGA------------------..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCAG--TGT--TC-----CAG-AGAT--TTTTTTACAG...............................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGT--TC-----CAG-AGAT--TTTTTTACAGTGTCG--AA......................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
..........................................................................................................................TAATT------GATACA--AATTT-G---AGTGATGAAGGC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTTACAGTGTCG--AATAAGTGAAG--CT--.......................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
...............................................CACATC-----------------------------ATGTAAGTCCTTGGAATA--TATT--------....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCTATATTTTAGA-TCTGAG-----------------------------------GAA---------T--------------------GGTC....................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
...............................................................................................................................................................................................................................................................................................................................................................................................................T-AGAAGGATTATGCG-------------------------------CTGA----G------------------------------------------------------------------TATG-----------------------------------------------------------------------AT................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCATTCCTATATTTTAGA-TCTGAG-----------------------------------G........................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAG-----------------------------------GAA---------T--------------------GGTCCAG--TGT--TC-----CAG-AGAT--.........................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
...ACAGCGCCGCTCTAAGATGT----G..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010
...............................................................................................................................................................................................................................................................................................................................................................................................................T-AGAAGGATTATGCG-------------------------------CTGA----G------------------------------------------------------------------TATG-----------------------------------------------------------------------A.................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................GTGATGAAGGCTCAAAATATT-ATCAT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................TATATT-TTGA------------------TG---------------------------------------------AAGATGTGTTAACT-------------------------------------------------------------------------------------------------------AGA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.TAACAGCGCCGCTCTAAGATGT----GTTTT-T....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................GTTATATT-TTGA------------------TG---------------------------------------------AAGATGTGTTAAC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACAGTGTCG--AATAAGTGAAG--CT--GGACA..................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTTTACAGTGTCG--AATAAGTGAA..............................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
.............................................................................................................................TT------GATACA--AATTT-G---AGTGATG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010
TTAACAGCGCCGCTCTAAGATGT----GTT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G--AATAAGTGAAG--CT--GGTA...................1821.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTCACT---------------------------------------------TGA-AAACTACACTC----------------AT-----TGCATT................................................................................................................................................................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................AGATGTGTTAACT-------------------------------------------------------------------------------------------------------AGAT-AGAAGGAT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
.................................TAAAACTCCTGGGTCACATC-----------------------------ATGTAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAT--TTTTTTACAGTGTCG--AATAAGTGAA..............................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
.................................................................................................................................................T-G---AGTGATGAAGGCTCAAAATAT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................TACA--AATTT-G---AGTGATGAAGGCTCAAAAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTACAGTGTCG--AATAAGGTC...............................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
.........................................................................................................................................................................................TG-----AAAGAG-GAGTTATATT-TTGA------------------TG---------------------------------------------AA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTTTACAGTGTCG--AATAAGTGAAA--...........................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAAGTGAAG--CT--GGACAACAAAC............2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droEre2
TTAAT--------------ATGT----CTTTC-TAAAACTCCTGGGTCACATC-----------------------------AAGTAAGTCCTTGGAATA--TATT--------T--AA-ACTAATT------GAGAAA--AATTT-A---AATCGTGAAGGCTCAAAATATT-ATCATT-AATTTG-----CAATAG-GAATTATATT-TGGA------------------CC---------------------------------------------AATACATGATAACT-----------------------------------------------------------------------------------------ATGTATGT------AGTT-AGAAGGTTTAGGAG-------------------------------CCGA---TGTA------------------------------------------------------CTTTTAAAAATACTTTTA--------------------------AA------------------------------AACTCAATGACC---------------------------------------------T-TTTTATT---------------------------------------------TGA-AAACTACATTC----------------ATATA-------TCTTACATTTAAGA-TCTTAC-----------------------------------AGA-------G-C-GGTAAA-------ATGAATTTTCCAG-----------------CGATTTTTTTTCTACAGTGTCG--AATCAGTGGAG--TT--GGACAACAAACAGA--AC----ASizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
No Reads
droYak3
TAAAAAGCGCCACTCTAAGATGT----GTTTC-TAAAACTCCTGGGTCACAGC-----------------------------ATGTAAGTCCTTGGAATA--TATT--------T--CA-ACTAATT------GAAGTA--AACTT-G---AATCATGAAGGCTCAAAGTATT-ACCATT-AATTTA-----CAATAA-GAATTATATT-TGGA------------------TG---------------------------------------------CAGATATGATAACT-------------------------------------------------------------------------------------------------------AGAT-AGAAGGTTTAGGCG-------------------------------ACG------TA------------------------------------------------------T---------TAATTATA--------------------------AA------------------------------AAGTCAATGACT---------------------------------------------TATCTCTTT---------------------------------------------TGA-AAACTAGTTTC----------------ATCTA----TATACTTATATTTAAGA-TCTTAG-----------------------------------GGA-------T-T-GATAAT-------TTGAATTTTCCAGCAA-T--TC-----CAG-ATTT--TTTCTTGCAGTGTCG--AATCCGTGGAG--CT--GGACAACAAACAGA--AC----ASizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
No Reads
droEug1
TTAGTATCGGCGCTTTCAGATCT----GCCTC-TAAAACTCCTGGGTCATAT------AGCACCTTTG--GCGCTCTGTTATTGCTATATCCTTGGAATA--TATTTAAGTTTT---AA-ACTAATT------TAACTGCCAATC----AGCAAAACGAAGGTTTTAACTATT-AACATC-AATTTT-----CA-----------TATT-TGGA------------------GC---------------------------------------------A-AATT--------------------------------------------------------------------------------------CT-----AGTCAAGTAATT------AGATTAGATAATTCAGGAGAAATCAA-CAATTTTGTTTGC--ATAATT--AT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------TTATTTTTTAATAAAGGAAACCCTTT-----TCTGTCA---------------------------------------------TGAAAAAATACA--C----------------A------------------------------------------------TTTAGGTAT---------TA-A-----------------------------TTCTCCTT--TTC--TT-----GCC-ACTT--TTTTTTACAGTGTCA--AA-CTTGGGAG--TC--TGACAACAAACAGA--GC----TSizeHit CountTotal NormTotal
No Reads
droBia1
TCAACAGCGGAGGTCTCAGGTGT----GTCTC-AAAAACTCCTGGGTCACA-------AGCACATTTC--ACGCTCTCCAATTTATAGATCCTTGGGATA--TATTTAAGTCTG---TG-ACTAATT------GAACTG--AATTG-GCAGCGAAATGAAGGCTTAAAAAATT-ATCGTT-CATTTA-----GA-----------TATT-TAGA------------------AA---------------------------------------------ATTATG---------------------------------------------------------------TTTTAATAT------AATGATTTCATTTGTTAATTTAAATTTAAAAAAATGTTAGAATTTTAAGCGAAAGTAAAACAATTT--TTTGTATAAGATTATAT------------------------------------------------------------------------------------------------GATTGTATTTT----------------------------------AA-T-----GT----------------------------------------------------------------------------------------------------------TTTATAT----------------AT------GTATCATTAAGTTTTAA---------------------------------------------ATTTATAATTTTGT--------------------TCGT--TTT--TT-----CCA-AATC--TTTTTTCCAGTGTCG--AATCTTAGGAG--TT--GGCCAACAAACAGA--GC----ASizeHit CountTotal NormTotal
No Reads
droTak1
TTAACAGCGGCGCTTTCAAATGA----GTCTT-AAAAACTCCTGGGTCATAT------AGCACATTTGAGACGCTCTCCAATTAGTAAATCCTTGGGATA--TATTTAAGTTTC---AA-ACTAATT------GATCTG--AATTC-GCAGAAAATTGAAGGCTTAAAATATT-ATCATT-AATTAG-----GT-----------TTTT-GGGA-------------------G---------------------------------------------AAAATG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGTTTTTAAA--------TGGATGGCTCTATATAAAATAAAACGTTTTGTTTTTAATGATTTATTAAACTGTA------TTATAAAGAAT-TATTATATTTTT----------------------------------------------ATTAGAAGGAAAAATAAGAA-----------CAGTGTAAACTTTAAT------AAATGTTT-----------------------------------------AAA-----------------------T----TT---------GGAAAA---------T-GT-TCC-------TTGATTTT---------T--TT-----ACG-ATTT--TTTTTTACAGTGTCG--AATCTCAGGAG--TT--GGCCAACAAACAGA--AC----ASizeHit CountTotal NormTotal
No Reads
droEle1
TCAACAGCGACGCTTTCAGCTGTCTGTTTTTG-AAAAACTCCTGGGTCATAGTCATATAGCATATTTT--ACGCTCTCCAATTTATAAATCCTTGGTATA--TATTTAAATTGT---TG-ACTAACT------GTGCTG--AATTC-GCTGCCACGTGAAGGCCTTAAATATT-ATCATT-AATTTG-----TT-----------TATT-TGGG------------------TT-----------------------------------------------------------------------------------------TGAATATTAAACGGCAAAGAAGATGTTCTAACGTCAGAGAAGTGATTTCGATTGTAAGCTGGTAATT-----------AAATGTCGCAGCGGAAGTGGA-ATTTTT--TTTGAAAATAATA--AT-A----G------------------------------------------------------------------TACGTAGT--------------------------AA------------------------------AAAT---------------------------------------TCAAGTCTTTC---TATCTCACT---------------------------------------------TAA-AAAATATGTAA----------------A------------------------------------------------T----TTAT---------TT-C------------AGATC-------CCGAATTCCCCTT--TTTTGTT------A--ACTTCTTTTTTGGCAGTGTCA--TAAGTTTGGAG--TT--GGCCAACAAACAGA--AC----ASizeHit CountTotal NormTotal
No Reads
droRho1
TCAACAGCGACGCTTTCAGGTGT----GTTTT-AAAAACTCCTGGGTCATAT------AGCACATTTT--ACGATCTCCAATTTGTGAATCCTTGGGATA--TATTTACAATTT---TA-ACTAATT------GAACTA--AATTC-ACTGCCACGTGAAGGCTTAAGATATT-AGCATT-AATTTG-----GA-----------TATT-TGAATCAAA-----------------------------------------------------------------------------------------------------------------AACTGCAGTGAAGATGTTCTAACGTCAGAAAAGTGTTTTCGAATTAAGTCAGATAATT------AGATTAGATGTTAAAGCGGAAATATA-CTGTTT--TTAGAAGATGATG--AT------------------------------------------------------------------------------------------------GAATGTGATTT----------------------------------AT-T-----ATTATA----------------------------------------------ATTATAAGAAATTTTAATGA-----------AAGTGTCATCTCAAAT--TA------------------------AATTA------------------TTATAAA-----------------------T----TT---------GCTGAATTTGT-ATTTTCT--------------------TCCA--TTT--TT------AGAGCTTCTTTTTTGCCAGTGTCG--AAATTTCGGAG--CT--GGACAACAAACAGA--AC----ASizeHit CountTotal NormTotal
No Reads
droFic1
TTGACAGCGACGCTTTCATATGT----GATTC-AAAAACTCCTGGGTCATAA------AGCACATTTT--ACGG--------TTGGTAATCCTTGGAATAGATATTTATATT--T--TA-ACTAATT------GAACTG--AATTC-GTGAAGCCATGAAGGTTTAAAGTATT-ATCACTTAATTTA-----TT-----------TATAATGACTGAAA-----------------------------------------------------------------------------------------------------------------AACTGCAGATAGGAT-TTCTAGCATGAAGAA-----TTCCA-----AATCAAATAA-------------------CCCGATACAAATCGG-A------------------TA--AC-AGAACGGATAAAAACTATTTAGTAGAGCTCTCCTGTTTTTAGAAAGAAGTTCGATCTTTAAA--------AATATATTTCTATATTATATAAA--------------------------------------------------------------------------------------------------------------------------------------------------------------------T----------------------A------------------------------------------------T----TTATTTTGTTTGTTA-A------ATTTCAT---TTGGTTTTTCGCATTTT--------T--TTATGAAACG-ATAA--TTTTTCCCAGTGTCG--AAGCTTTGGAG--AT--GAGCAGCAAACAGA--AC----ASizeHit CountTotal NormTotal
No Reads
droKik1
TTAACAGCGGCGCTTTCAGCTTT----GACTCGAAAAACTCCTGGGTCATAGCCACA-CACACATTAG--ATTCTCTTAAATTTGTTAATCCTTGGAATA--TATTTATGTTTT---TAATCTAATTAAATTTGATATA--AGTC----AGCGAAGCGAAGGTTAAGCAAATTAATCATT-AATTTA-----AAGCAAAGAATGG-----TGGG------------------AA---------------------------------------------AAGACTTGTTGGTTATCTTAAAAAATTAAATTTTTAATTGGGTTTTATTTTTTTAAAGCATTAAAGTTTTCCT------------------------------------------------------------C----------------------------------------------------------------------------------------------------------------------TATA--AAAAGATGCTTTTATTTAAATAATTTTCCATATTAAATTTATATTTTCT---------------------------------------------AAAACCCTTTCACTATCTC-------------------------------------------CAACTTA-----CAGTTCAAATTTGCAAATAAAATCA------------------TTTAAAGTTCTC-GGAAAAAAGCTAACATATTTATTTAT---------TT-T------------TTATC-------CAGAATTTT-----------TT------AGACCTT--TTTCCCTCAGTGTCG--GAACTTTGGTT--ATCCGGCAAACAAACAGAGAAC----CSizeHit CountTotal NormTotal
No Reads
droAna3
TTGGGAGCGGTGCTTTAAGATCT----GTACACAAAAACTCCTGGTTCATGC------AGCT-------------CGGCGGTTTGTTAATCCTTGGAATA--TATT--------TTCCA-ACTAATT------GAACTA--ATTTT-GCAGCCG-CTGAAGGCTTTAATTTTT-AACATT-TTT-AGTCATGG--------------------A------------------CTAATAGATCACAAAAAGATCTGATCT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTAAAGTTTTGACAATATTTTTA--------------------------GATGATCTGTGGAATAATA------TTCTATTAGAT-TATCTTATCTTTGGGGTAACAATTC-----------------------------------------------ATATAGTATTTTAAGAACC----------------------------------------------------------CCCTAAGTATTA----------------------------------------------GCTCATGA---------------------T----------TTTGGTT------CGTGCTT--TTTTTCTTAGTGTCTTAGAGCTTTAGTT--GC--GGCCGAGAGGCTCA--CCCTATGSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
No Reads
droBip1
TTGGGAGCGGTGCCTTAAGATCT----GTACCACAAAACTCCTGGGTCATGC------AGC-------------TTGGTGGTTTGTTAATCCTTGGAATA--TATT--------TTCCA-ACTAATT------GAACTA--ATTTT-GCAGCC-GATGAAGGCTTAAATTATT-AACATT-TTT-AGTCATGGT------AGA-------TAAATCAAA--------------------------AATAGATGTCAGCTTTTGGGAGTAGAATG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTAATAGTTC-----------------------------------------------ATATAATATTTAAAGAACT----------------------------------------------------------CCCTAAATATTA----------------------------------------------ACTCATGA---------------------T----------TTTGGTT------CGTGCTT--TTTTTCTTAGTGTCT--GAGCTTTGGAT--GC--GGCCGAGAAGCCCA--CCCT--ASizeHit CountTotal NormTotal
No Reads
dp5
AAA-T-ACAAATTTTTTGTTTTT----TTTTT-TTAAATTCCTGCCTCAAGC------TTCACTGC----TGCTTCTCTAGTCTGGGAATCCTTGGTATA--CATT--------T--CG-ACTAATT------GAACTC--ATTTTTCTAGCCTCACGAAGGTTCAATATCTT-ACCATT-AATTTG-----GT-----------AGGT-TCAACCGAGCATTACCCTTGAAGC--------------AGAATATAATTTTAAGCAATAATAGAGGGAG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AG-------------------------------------------------AATAGAATAATTTAAGGG------------------------------------------------------------------------------------A---------------------------------------GAA-C------------------------------T---------------------------TGGCGCCG--GCTTGGTGAGGCATT--GGCCATTGGGCAT----------SizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
No Reads
droPer2
AAA-T-ACAAATTTTTTATT-------TTTTT-TTAAATTCCTGCCTCAAGC------TTCACTGC----TGCTTCTCTAGTCTGTGAATCCTTGGTATA--CATT--------T--CG-ACTAATT------GAACTC--ATTTTTCTAGCCTCACGAAGGTTCAATATCTG-ACCATT-AATTTG-----GT-----------AGGT-TCAACCGAGCATTACCCTTGAAGC--------------AGAATACAATTTTAAGCAATAATAGAGGGAG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AG-------------------------------------------------AATATAATAATTTAAGGG------------------------------------------------------------------------------------A---------------------------------------GAA-C------------------------------T---------------------------TGGCGCCG--GCTTGGT---------------------GAG--GC----ASizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
No Reads

Generated: 05/18/2015 at 09:53 AM