ID:dsi_4483 |
Coordinate:3r:4132822-4133000 + |
Confidence:Candidate |
Type:Unknown |
[View on UCSC Genome Browser {Cornell Mirror}] |
| Legend: | mature | star | mismatch in read |
|
intergenic
No Repeatable elements found
|
GACGGGAGGATATCCCAAAATAAAGACTCCTGTGGTGTCTAACGTGAGGAGTCTTCCGCAGAGCATGGCTCACATGTTCGATATGTAATTTAAGAGTCTTTCTCAGAAACATGTTAATAAAACAAGAAGAAATCTATGAGACACCTAAATAATTGTCCAATTTATTAAATGTTTACTTGTATTTGCCAACACTTTCGACCACATCTAATACCTTCTTCCTTTATTGCAGTTGTTCTGGCCAACGAAGAGGTGCCCAATCCGGAAGATGTGCTGGTATTC
**************************************************.......((((((((((.....)))))))(((((((...((..(((.....)))..))))))))).(((((..((((((.......((.((((..........))))))...(((((.((((....(((....((....))....)))..)))).))))).))))))..))))))))..************************************************** |
Read size | # Mismatch | Hit Count | Total Norm | Total | SRR618934 dsim w501 ovaries |
SRR553488 RT_0-2 hours eggs |
SRR553487 NRT_0-2 hours eggs |
SRR553486 Makindu_3 day-old ovaries |
SRR553485 Chicharo_3 day-old ovaries |
|---|---|---|---|---|---|---|---|---|---|---|
| ..............................TGTGGTGTCTAACGTGAGGAGTCT................................................................................................................................................................................................................................. | 24 | 0 | 1 | 1.00 | 1 | 1 | 0 | 0 | 0 | 0 |
| .................................GGTGTCTAACGTGAGGAGTCT................................................................................................................................................................................................................................. | 21 | 0 | 1 | 1.00 | 1 | 1 | 0 | 0 | 0 | 0 |
| ..................................................GTATTCCGTAGAGCATGCCT................................................................................................................................................................................................................. | 20 | 3 | 3 | 0.33 | 1 | 0 | 0 | 1 | 0 | 0 |
| ......................................................................CGCAAGTTCGATATGTAA............................................................................................................................................................................................... | 18 | 2 | 3 | 0.33 | 1 | 0 | 1 | 0 | 0 | 0 |
| ...............................................................CAGGGTTCACATGTTCGA...................................................................................................................................................................................................... | 18 | 2 | 4 | 0.25 | 1 | 0 | 1 | 0 | 0 | 0 |
| ...............................................GGAGTCTTTCGCAGA......................................................................................................................................................................................................................... | 15 | 1 | 5 | 0.20 | 1 | 0 | 0 | 0 | 0 | 1 |
| ............................CCTTTGTTGTCTAACG........................................................................................................................................................................................................................................... | 16 | 2 | 20 | 0.20 | 4 | 0 | 0 | 0 | 4 | 0 |
| ............................................TGATGAGTCTTCCGC............................................................................................................................................................................................................................ | 15 | 1 | 5 | 0.20 | 1 | 1 | 0 | 0 | 0 | 0 |
| ...........................TCCTTTGTTGTCTAACG........................................................................................................................................................................................................................................... | 17 | 2 | 11 | 0.18 | 2 | 0 | 0 | 0 | 2 | 0 |
| .................................................................................................................................................................................................................................................................TCTGGAAGATGTGCTG...... | 16 | 1 | 6 | 0.17 | 1 | 0 | 0 | 0 | 1 | 0 |
| ................................................................................................................................................................................................................................TGTAGTTGTTCTGGCC....................................... | 16 | 1 | 9 | 0.11 | 1 | 0 | 0 | 1 | 0 | 0 |
| ...GGGAGGATTGCCCAAAA................................................................................................................................................................................................................................................................... | 17 | 2 | 20 | 0.10 | 2 | 2 | 0 | 0 | 0 | 0 |
| ..................................................GTATTCCGTAGAGCATGCC.................................................................................................................................................................................................................. | 19 | 3 | 11 | 0.09 | 1 | 0 | 0 | 1 | 0 | 0 |
| .....................................................................TCACATGTTCGATCTA.................................................................................................................................................................................................. | 16 | 2 | 20 | 0.05 | 1 | 0 | 1 | 0 | 0 | 0 |
| ..................................................GTATTCCGTAGAGCATGC................................................................................................................................................................................................................... | 18 | 3 | 20 | 0.05 | 1 | 0 | 0 | 1 | 0 | 0 |
| ...........................................................................................................................................................................................................................................TGGCCAACGAAGAGT............................. | 15 | 1 | 20 | 0.05 | 1 | 1 | 0 | 0 | 0 | 0 |
| .CCGGGAGCATATCCCA...................................................................................................................................................................................................................................................................... | 16 | 2 | 20 | 0.05 | 1 | 1 | 0 | 0 | 0 | 0 |
|
CTGCCCTCCTATAGGGTTTTATTTCTGAGGACACCACAGATTGCACTCCTCAGAAGGCGTCTCGTACCGAGTGTACAAGCTATACATTAAATTCTCAGAAAGAGTCTTTGTACAATTATTTTGTTCTTCTTTAGATACTCTGTGGATTTATTAACAGGTTAAATAATTTACAAATGAACATAAACGGTTGTGAAAGCTGGTGTAGATTATGGAAGAAGGAAATAACGTCAACAAGACCGGTTGCTTCTCCACGGGTTAGGCCTTCTACACGACCATAAG
**************************************************.......((((((((((.....)))))))(((((((...((..(((.....)))..))))))))).(((((..((((((.......((.((((..........))))))...(((((.((((....(((....((....))....)))..)))).))))).))))))..))))))))..************************************************** |
Read size | # Mismatch | Hit Count | Total Norm | Total | SRR553485 Chicharo_3 day-old ovaries |
SRR618934 dsim w501 ovaries |
SRR553486 Makindu_3 day-old ovaries |
SRR553488 RT_0-2 hours eggs |
M025 embryo |
|---|---|---|---|---|---|---|---|---|---|---|
| ...........................................................................................................................................CTGTGGATTTATTAACAGGTTAAAT................................................................................................................... | 25 | 0 | 1 | 1.00 | 1 | 1 | 0 | 0 | 0 | 0 |
| ............................................................................................................................................................................................................................................CCGGTTGCTTCTCAAGGGG........................ | 19 | 2 | 4 | 0.25 | 1 | 0 | 1 | 0 | 0 | 0 |
| .....................................AGATAGCACTCCTGA................................................................................................................................................................................................................................... | 15 | 2 | 20 | 0.20 | 4 | 0 | 0 | 4 | 0 | 0 |
| .....................................................................................................................................................................................................................................................TCTCCACAGGTGAGGCC................. | 17 | 2 | 16 | 0.06 | 1 | 0 | 0 | 0 | 1 | 0 |
| ........................................................................................................................................................................................................................................................CCACGCCTCAGGCCTTCTA............ | 19 | 3 | 18 | 0.06 | 1 | 0 | 0 | 0 | 0 | 1 |
| ..............................................................................................TCAGAAAAAGGCTTTGT........................................................................................................................................................................ | 17 | 2 | 20 | 0.05 | 1 | 0 | 1 | 0 | 0 | 0 |
Generated: 04/23/2015 at 08:40 PM