ID:

dsi_4454

 Coordinate:

3r:10711960-10712109 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

Flybase annnotation

intergenic

No Repeatable elements found

Sense Strand Reads

TGGAACATGGACGCACTAAGCGCAGCCTGCTAACCACTCTGGATGCCACCGTAAGTAGCCAAGGACACTGATAAATTCTGGGGTAGTTGTGCTAAATTATGCACCAGATGCGACATTAAATCATCATGTGACATTGAACGAATTGCGAAGCAAATTTCAATACCAATTACTTAGAACTTGAACTAAACCTACCTAGATAAACAGAACCATTTCTCTTACATTTTCATCATTTATATACATTTTAAAACTC
**************************************************.(((((((....((.(((((((......((..(((...((((........))))....)))..)).......)))).)))..((((((....((((...))))..)))))).))..)))))))...........................************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553486
Makindu_3 day-old ovaries
 M023
head
 SRR553487
NRT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
 SRR553488
RT_0-2 hours eggs
 M053
female body
................TAAGCGCAGCCTGCTAACCACTCTGGA............................................................................................................................................................................................................... 27 0 1 2.00 2 2 0 0 0 0 0
.......TGGACGCACTAAGCGCAGCCTGCTAACCAC..................................................................................................................................................................................................................... 30 0 1 1.00 1 1 0 0 0 0 0
............................................................................TCCGGGGCAGTTGTGCT............................................................................................................................................................. 17 2 10 0.20 2 0 0 0 2 0 0
..........................................................................................................................................................................................................AGAACCACTTCTCTCACA.............................. 18 2 5 0.20 1 1 0 0 0 0 0
.............................................................................................................................................................................GAACTAGACCTTAACCTACC......................................................... 20 3 6 0.17 1 0 1 0 0 0 0
..............................................................................................................................................................................AACTGGACCTAGACCTACCT........................................................ 20 3 6 0.17 1 0 0 1 0 0 0
...............................................................................................................GACGTCAAATCATCATG.......................................................................................................................... 17 2 20 0.10 2 2 0 0 0 0 0
....................................................................TGAAAAATTCTGGGATACTTG................................................................................................................................................................. 21 3 12 0.08 1 0 0 0 0 1 0
..............................................................................................................CGACGTCAAATCATCATGC......................................................................................................................... 19 3 16 0.06 1 0 0 0 0 0 1
.............................................................................................................ACGACGTCAAATCATCATG.......................................................................................................................... 19 3 19 0.05 1 0 1 0 0 0 0
...........................................................................................................................................................................................................GAACCACTTCTCTCACA.............................. 17 2 20 0.05 1 1 0 0 0 0 0
.....................................................AGTGGCCTAGGACACT..................................................................................................................................................................................... 16 2 20 0.05 1 0 0 0 0 1 0
....................CTCAGCCTGCTAACTA...................................................................................................................................................................................................................... 16 2 20 0.05 1 0 0 1 0 0 0
......................................................GTGGCCTAGGACACTG.................................................................................................................................................................................... 16 2 20 0.05 1 0 0 0 0 1 0

Anti-sense strand reads

ACCTTGTACCTGCGTGATTCGCGTCGGACGATTGGTGAGACCTACGGTGGCATTCATCGGTTCCTGTGACTATTTAAGACCCCATCAACACGATTTAATACGTGGTCTACGCTGTAATTTAGTAGTACACTGTAACTTGCTTAACGCTTCGTTTAAAGTTATGGTTAATGAATCTTGAACTTGATTTGGATGGATCTATTTGTCTTGGTAAAGAGAATGTAAAAGTAGTAAATATATGTAAAATTTTGAG
**************************************************.(((((((....((.(((((((......((..(((...((((........))))....)))..)).......)))).)))..((((((....((((...))))..)))))).))..)))))))...........................************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553488
RT_0-2 hours eggs
 GSM343915
embryo
 SRR618934
dsim w501 ovaries
 SRR553487
NRT_0-2 hours eggs
.................................................................................................................................................................................AACTTGATTTAGATGG......................................................... 16 1 2 0.50 1 1 0 0 0
.....................................................................................................ATGGTCTCCGGTGTAATTTAG................................................................................................................................ 21 3 3 0.33 1 0 1 0 0
...............................................................................................................................................................................................GGATCTGTTTCTCTTGGT......................................... 18 2 5 0.20 1 1 0 0 0
..................................................................................................................................................................................................................AAGAGAATGTAAAGGT........................ 16 1 8 0.13 1 1 0 0 0
......................GTTGGTCGATTGGTGCGACCT............................................................................................................................................................................................................... 21 3 9 0.11 1 0 0 1 0
.............................................................................................................................................................................................TTGGATCTGTTTCTCTTGGT......................................... 20 3 12 0.08 1 1 0 0 0
...............................................................................................................................................................................................GGATCTGTTTCTCTTG........................................... 16 2 20 0.05 1 1 0 0 0
................................................................................................................................................................................................GATCTGTTTCTCTTGGT......................................... 17 2 20 0.05 1 1 0 0 0
.............................................................................................................................................................................................TTGGATCTGTTTTTCTTGGT......................................... 20 3 20 0.05 1 1 0 0 0
.............................GATTGGTGCGAGCTAC............................................................................................................................................................................................................. 16 2 20 0.05 1 0 0 0 1
..............................................................................................................................................................................................TGGATCTGTTTCTCTTG........................................... 17 2 20 0.05 1 1 0 0 0

Generated: 04/24/2015 at 10:46 AM