ID:

dsi_4453

Coordinate:

3l:23397238-23397387 +

Confidence:

Candidate

Type:

Unknown

[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-26.1 -25.9 -25.9

Flybase annnotation

intergenic

Repeatable elements

NameClassFamilyStrand
DNAREP1_DMRCHelitron-
mature
  1. 2l:19665754-19665779 -
  2. 2l:22320463-22320488 -
  3. 2r:914079-914104 -
  4. 3l:23291528-23291553 -
  5. dsi_4453  3l:23397256-23397281 +
star

Sense Strand Reads

GGGTATAGAATCTGCATGCCTAATCTTAACTTTTACAATTTTGTAGTTCCTGTATTTCCAGACGAAAATGGACAGAGGTAGATAGAGAGGTAGCTCTTTCACTTAAACATCCGATAGGAAAAAGTTACTTTTTAGCGTAGGAGATCTATGTATACCCAATTATATTATAATTATGTCTTATTTTTTCTAATGTATTACAGGCATCCAGATAAAGTTAAAAATGATTACGGTGCCGAAAAGTTTATACAAA
**************************************************((((.....(((.(((((((((((..((((....(((((((((((.((((.((............)))))).))))))))))).((((((.....)))))).)))).((((((...)))))).)))).)))))))))).......)))).**************************************************
Read size # Mismatch Hit Count Total Norm Total SRR553488
RT_0-2 hours eggs
SRR902008
ovaries
SRR553487
NRT_0-2 hours eggs
SRR553486
Makindu_3 day-old ovaries
SRR618934
dsim w501 ovaries
GSM343915
embryo
O001
Testis
M025
embryo
....................................................................TGGACAGAGGTAGATAGAGAGGTAGC............................................................................................................................................................ 26 0 5 0.60 3 1 1 1 0 0 0 0 0
.............................................................................................................................TACTTTTTAGCATAGGAGATCTATGTA.................................................................................................. 27 1 5 0.40 2 2 0 0 0 0 0 0 0
.....TAGAATCTGCATGCCTAATCTTAAC............................................................................................................................................................................................................................ 25 0 5 0.40 2 2 0 0 0 0 0 0 0
.......................................................................ACAGAGGTAGATGGGGA.................................................................................................................................................................. 17 2 20 0.20 4 0 0 0 4 0 0 0 0
.................................................................AAATGGACAGAGGTAGATAGAGAGGT............................................................................................................................................................... 26 0 5 0.20 1 0 1 0 0 0 0 0 0
.................................................................AAATGGACAGAGGTAGATAGAGAGG................................................................................................................................................................ 25 0 5 0.20 1 1 0 0 0 0 0 0 0
........................................................TCCAGACGAAAATGGACAGAGGT........................................................................................................................................................................... 23 0 5 0.20 1 0 0 0 0 1 0 0 0
.......................................................................................................................................................................................TTTTTAATGTATTACAGGCATCCAGA......................................... 26 1 5 0.20 1 0 0 0 1 0 0 0 0
.................................................................................................................................................................................................ATTACAGGCATCCAGA......................................... 16 0 5 0.20 1 0 0 0 0 1 0 0 0
..............................................................CGAAAATGGACAGAGGTAGATAGAGAGG................................................................................................................................................................ 28 0 5 0.20 1 0 0 1 0 0 0 0 0
..............................................................CGAAAATGGACAGAGGTAGATAGAGAG................................................................................................................................................................. 27 0 5 0.20 1 0 1 0 0 0 0 0 0
.............................................................ACGAAGATGGATAGAGGTAGAG....................................................................................................................................................................... 22 3 7 0.14 1 0 0 1 0 0 0 0 0
...............................................................................AGATAGAGTGATAGCTCTTT....................................................................................................................................................... 20 2 13 0.08 1 0 0 0 0 0 1 0 0
..........................................................................................................................................................CTCAATTATATTATAATT.............................................................................. 18 1 14 0.07 1 0 0 0 0 0 0 1 0
.................................................................................................................................................................ATATAATTATTATGTCTTATG.................................................................... 21 3 20 0.05 1 0 0 0 0 0 0 0 1

Anti-sense strand reads

CCCATATCTTAGACGTACGGATTAGAATTGAAAATGTTAAAACATCAAGGACATAAAGGTCTGCTTTTACCTGTCTCCATCTATCTCTCCATCGAGAAAGTGAATTTGTAGGCTATCCTTTTTCAATGAAAAATCGCATCCTCTAGATACATATGGGTTAATATAATATTAATACAGAATAAAAAAGATTACATAATGTCCGTAGGTCTATTTCAATTTTTACTAATGCCACGGCTTTTCAAATATGTTT
**************************************************((((.....(((.(((((((((((..((((....(((((((((((.((((.((............)))))).))))))))))).((((((.....)))))).)))).((((((...)))))).)))).)))))))))).......)))).**************************************************
Read size # Mismatch Hit Count Total Norm Total SRR618934
dsim w501 ovaries
SRR553486
Makindu_3 day-old ovaries
SRR902008
ovaries
SRR553488
RT_0-2 hours eggs
M053
female body
M025
embryo
M024
male body
SRR553487
NRT_0-2 hours eggs
SRR553485
Chicharo_3 day-old ovaries
.........................................................................................................................................ATCCTCTAGATACATATGGGTTAAT........................................................................................ 25 0 5 0.40 2 0 2 0 0 0 0 0 0 0
...........................................................................................................................................................................ATACAGAATAAAAAAGATTACATAA...................................................... 25 0 5 0.40 2 0 0 2 0 0 0 0 0 0
.......CTTAGACGTACGGATTAGAAT.............................................................................................................................................................................................................................. 21 0 6 0.33 2 0 0 2 0 0 0 0 0 0
............................................................................................................................................CTCTAGATACATATGGGTTAATAT...................................................................................... 24 0 5 0.20 1 0 0 0 1 0 0 0 0 0
......................................AAAACATCAAGGACATAAAGGTCTGC.......................................................................................................................................................................................... 26 0 5 0.20 1 1 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................AGATTACATAATGTCCGTAGGTCT......................................... 24 0 5 0.20 1 1 0 0 0 0 0 0 0 0
..........AGACGTACGGATTAGAATTGAAAA........................................................................................................................................................................................................................ 24 0 5 0.20 1 0 0 0 1 0 0 0 0 0
....................................................................................................TGAATTTGTAGGCTATCCTTT................................................................................................................................. 21 0 5 0.20 1 1 0 0 0 0 0 0 0 0
.................................................................................................................................................................................AAAAAAAAAAATTACATAATGTCCGTAGGTCT......................................... 32 2 5 0.20 1 0 1 0 0 0 0 0 0 0
.........................................................GGTCTGCTTTTACCTGTCTCCATCT........................................................................................................................................................................ 25 0 5 0.20 1 1 0 0 0 0 0 0 0 0
.....................................TAAGACATCAAGGACATAAAGGTCTGC.......................................................................................................................................................................................... 27 1 5 0.20 1 1 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................TCCGTAGGTCTATTTCAATTTTTACT.......................... 26 0 5 0.20 1 0 0 0 0 0 1 0 0 0
................................................................................................................................................AGATACATATGGGTTAATATAATATTACT............................................................................. 29 1 5 0.20 1 0 1 0 0 0 0 0 0 0
........................................................................................CCACCGAGAAAGTGAATTTGT............................................................................................................................................. 21 1 5 0.20 1 1 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................GTCCGTAGGTCTATTTCAATTTTTACT.......................... 27 0 5 0.20 1 0 0 0 0 1 0 0 0 0
............................TGACAATGCTAAAATATCAAGGAC...................................................................................................................................................................................................... 24 3 5 0.20 1 0 0 0 1 0 0 0 0 0
..........AGACGTACGGATTAGAATT............................................................................................................................................................................................................................. 19 0 6 0.17 1 1 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................GTAGGTCCATTTTAATTTTT............................. 20 2 7 0.14 1 0 0 0 0 1 0 0 0 0
..................................................................................................AGTCAATTTCTATGCTATCC.................................................................................................................................... 20 3 12 0.08 1 0 0 0 0 0 0 1 0 0
....................................................................................................................................................................................................TGTCCGTAGGTCAAT....................................... 15 1 15 0.07 1 1 0 0 0 0 0 0 0 0
...................................................................................................GTGAAGATGTAGGCTAT...................................................................................................................................... 17 2 16 0.06 1 0 0 0 0 0 0 0 1 0
.........................................................GGTCTGCTTTTGCCT.................................................................................................................................................................................. 15 1 20 0.05 1 1 0 0 0 0 0 0 0 0
....................................................................................................CGAAGTTGTAGGCGATCCT................................................................................................................................... 19 3 20 0.05 1 0 0 0 1 0 0 0 0 0
........................AAATTTATAATGTTAAAACATC............................................................................................................................................................................................................ 22 3 20 0.05 1 0 0 0 0 1 0 0 0 0
.............AGTACGGAGTAAAATTGAAA......................................................................................................................................................................................................................... 20 3 20 0.05 1 0 0 0 0 0 0 0 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 3l:23397188-23397437 + dsi_4453 GGGTATAGAATCTGCATGCCTAATCTTAACTTTTACAATTTTGTAGTTCCTGTATTTCC-----------AGACGA--AAATGGACAGAGGTA----------------GATAGAGAGGTA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCTCTTTCACTTAAACATCCGATAGGAAAAAGTTACTTTTTAGC--------------GTAGGAGATCTATGTATACCC------AATTATATTATAAT---TATG---TCTTAT---TTTTTCTAATGTATTACA-----------------------------GGCATCCAGATAAAGTTAAAAATGATTACGGTGCCGAAAAGTTT--ATACAAA
droSec2 scaffold_48:148514-148761 - GGGTATAGAATCTGCATGCCTAATCTTAACTTTTACAATTTTGTAGTTCCTGTATTTCC-----------AGACGA--AAATGGACAGAGGTA----------------GATAGAGAGA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GATGTTTCACTTAAACATCCGATAGGAAAAAGTTACTTTTTAGC--------------ATAGGAGATCTATGTATACCC------AATTATATTATAAT---TATG---TCTTAT---TTTTTCTAATGTATTACA-----------------------------GGCATCCAGATAAAGTTAAAAATGATTACGGTGCCGAAAAGTTT--ATACAAA
dm3 chr3LHet:1532046-1532305 + AAAAATTCTTTCTAT----TTATACGCGGCCTTGA-----------------AAAT--------------------------------------------------------------------TGTGAT-------------------------------------------------------------AT-------------------------------CTTCTTCGGGTGCAAGATATTGT------GATTC-----------CATATAACTCTTAGTATTCTTTTTGGTTAGACTTATTTCACTTAGTCATCCGATGGGAAAAAGTTAGTTTTTAGC--------------ATAGGAGAAATATGCATACCC------AATTAAATTATAAT---TATG---GCTTAT---TCTTTTTAATATATTACA-----------------------------GGCATCCTGATAAAGTTAAAAATGATTACGGTGCCGAAAAGTTC--ATACAAA
droEre2 scaffold_4845:411521-411736 + GTCTCTGGAAGCTGCATCCTTAATCTCAACATTCTAGCTTTTGTAGTTCCTAAGATCAAGGCGTTCATACGGACAGACGGT----------------------------TATGGACAGTTCAACTTGGCTTT-A------------------------------------------------------------------------------------------------------------------------ACTTTGTATAACCAATAGAAATTTTCTTA---------------------------------------------------AGTTATAAGC----ACAGAAGGT-AAGAATGTAATATACACATAT------AGGAACCCTATAAT---TAGT---TTGTATTACTTTTCAAAATATTTT-------------------------------------------------------------------------------------
droYak3 2R:78310-78522 - GCCTCTGGAGTCAGTATGCTTAATCTCAACTTTCTAGCTTTTGTAGTTCCTGAGATCACAGCCTTT-------------------------------------------------------------------------------------------------------------------------------------------------------------TACTCTACGAGTAACGGGTATAATTAGATAAAATC-----------AAATTAATTCCCAGTTTCTAC---------------------------------CTGAATCAGTCTCAGTTTAAA--------------ATTGCTGCATTATGCAT---T------AGTTAAGTTAGTAA---TTAA--ATTTTAT---TTTTGCTTATGA-------------------------------------------AATAAAACGAAAAA------------------------------T
droEug1 scf7180000409675:46090-46361 + AAG-----AATCTTCATGGATAAGCTCAACTTTGTATCTCTTATAGTTCCTGAGATCTCAGCGTTCATACGGACAGACGGACA----GACGCATGGACAGATGGACGGACATGGCTCAATCGACTTCGCTATTGATCCTAATCAAGAATAAATATACTGTATAGGGTCGGAAACGCTTCCTTCGACCTATTACATACTTTTCAACGAATCTAGTATACCCTTTTTCTCTACGACTAACGGGTAT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AACAAAGCTAAAA--------GGTGTCCAAAAATCTAATCGGAAA
droBia1 scf7180000302043:20853-21014 + AGCCCAGAAATCTGCATGCCAAATCTGCCGGTTCTAGTTC--ATAT-CTCCGATATCTCATCGTTCATACGGACAGACATACAGACAG--------ACATACAGATGGACATGGCTAGATCAACTATGCTTGTGATCTTGATCAAGAATAAATATACTTTATGGAGTCGGAA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A
droTak1 scf7180000415875:616409-616654 + AGCCCAAGAATATGTGTGGAAAATCTCAACCTTCTAGATTTTGTAGTTTCTGAGATCTCAGCGTTCATACGGACGGACA--------G----------------ACGGACATGGCAATATCGACTCGGCTAGTGACCCTGATCAAGAATATATATACTTTATAGGGTCGGAAACGCTTCCTTCTCCCTGTTACATAC-------------TAATATACCCTTTTACTCTACGAGTAACGGGTATA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATACATTAAAATTTGTTACGAC----AAACATTT--TCTCAAT
droEle1 scf7180000489069:5454-5626 + ACTACTAGAATCTGCATGCAAAGTTCCAAATGTCTAGATTTAATAATTTCCTAGATCTTGACATACATACAGACGGACATA----------------------------AAAAGA--------CTCTGTT-------------------------------------------------------------ATATAT-------------TAAGA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGCG-TAATGC---TCTTACAAC--------CGAATGACAAAAAGCTAAATTTTCAACGTGGATTTCGAAGTGGACCCA----------------------------------A
droRho1 scf7180000767512:7938-8091 + ACTCCTAAAATCTACATGCAAAATGCTAA---TCTAGCTTTTATAGTTTCCGAGATCTCAGCGTTCATACGGACAGACAAACGGACAG----------------ACGGACATGGCTAGATCGACTCCGCTAGAGATCCTGATCAAGAATATATATACTTTATAGGGTCGGAA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A
droFic1 scf7180000454040:20684-20850 - TTTTCTTAAAAAT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGGAAAACTATACCGTTTAGCTGCCATGGAAAAGTTCAAAAAATCTGTATAGAATTAAGGGAAATAATATTATAAT---TACG---TTGTAT---TTTTTCATTTATG--CACGATTTTTAGA--------------------------ATATAGAGTTTTTAACGACTAT--TAAATTAAATTTC--ATAAAAA
droKik1 scf7180000302473:884692-884790 + AAAAAGAAAATCTTGAACTTAAATAT---------------------------------------------------------------------------------------------------------------------------------ACTA--------------------------------------------------------------------------------------------------------------CATAAATTATCTAGTAA-------------------------------------------------------------------------------------------------------TTATTGTGGT---TAGA---TCTTAT---TTTTTCCTGTGTATTTTT-----------------------------GGCCTCTTGACAG---------------------------------------A
droAna3 scaffold_13089:665813-665904 + AAGGATAATTTTTAG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T--------------ACAAAA----------TATTT------TAATATAACATATT---TATT---TATTAT---ATTATTTATTATAATATA-----------------------------AATATTATTATAAAAATAAAAA------------------------------T
droBip1 scf7180000396376:1160-1234 + TAAAT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATGAT---TATT---TCTTTT---CATAATTATTATTTTGTG-----------------------------ATTTTAAAAATGAAACTAAATATGATTACGGTCCCG-----------------
dp5 XR_group6:2625940-2626031 + CAACTCTATTACG----------A------------------ATAT-TTTTCATATTTCTTCGCAAGTG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGGCACA----------------------------------------------------------------------------------------------------GGCACGGAAAAA--------------------------------------------------------------------------------------------------------------------GTTAACATTAAAAGCGATGGCGGTGCCGAAAA------------G
droPer2 scaffold_3:816347-816431 - AATTATTTTTTA-----------------------------CATAGTGTAATAAATATT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTCA-----------------------------GGCATCCAGACAAAAATCAGATTCCTGGAGCCGAAGAAAAGTTT--GTTGAGA
droWil2 scf2_1100000004902:11640175-11640285 + AGATCTA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCTGTTTATCA------CAGTAAATGATAATGATTATC---GTTTCG---TCTTTC---AATCTTTTA-----------------------------GGCATCCTGATAAAAATAAAAATCCCGAAGCTGAAGAAAAATTT--GTCGAGA
droVir3 scaffold_12963:11594943-11595019 - TATGATTATTT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GACTATATATTAAT---TATA---CTTTAT---TTTTTCTAATCGCTTTCA------------------------GTTTTGGCTTCTGGGTGAAGTCA----------------------------------A
droMoj3 scaffold_4111:5015-5087 - AAAATTGACTTTTTT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTATGTATAACA------GGCAATAACAGGAC---TATT---TCTGAC---TTTTTTCTATGTATAACA-----------------------------GGCA-------------------------------------------------
droGri2 scaffold_14624:1394711-1394768 - TTTGCTTGCCTCA----------ATTTTGTTTTTTTAATTTTTTTATTTTTGTTTACCT-----------AAACGA--AA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
GGGTATAGAATCTGCATGCCTAATCTTAACTTTTACAATTTTGTAGTTCCTGTATTTCC-----------AGACGA--AAATGGACAGAGGTA----------------GATAGAGAGGTA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCTCTTTCACTTAAACATCCGATAGGAAAAAGTTACTTTTTAGC--------------GTAGGAGATCTATGTATACCC------AATTATATTATAAT---TATG---TCTTAT---TTTTTCTAATGTATTACA-----------------------------GGCATCCAGATAAAGTTAAAAATGATTACGGTGCCGAAAAGTTT--ATACAAASizeHit CountTotal NormTotalM023
Head
M024
Male-body
M025
Embryo
M053
Female-body
O001
Testis
O002
Head
SRR553485
Ovary
SRR553486
Ovary
SRR553487
Ovary
SRR553488
Ovary
SRR618934
Ovary
V044
Embryo
SRR902008
Ovary
SRR902009
Testis
SRR1275487
Male larvae
SRR1275485
Male prepupae
SRR1275483
Male prepupae
.................................................................................TGGACAGAGGTA----------------GATAGAGAGGTA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GC........................................................................................................................................................................................................................2650.60300000000110010000
.....TAGAATCTGCATGCCTAATCTTAAC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2550.40200000000020000000
..............................................................................AAATGGACAGAGGTA----------------GATAGAGAGGT..............................................................................................................................................................................................................................................................................................................................................................................................................2650.20100000000000010000
..............................................................................AAATGGACAGAGGTA----------------GATAGAGAGG...............................................................................................................................................................................................................................................................................................................................................................................................................2550.20100000000010000000
........................................................TCC-----------AGACGA--AAATGGACAGAGGT..........................................................................................................................................................................................................................................................................................................................................................................................................................................2350.20100000000001000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................ATTACA-----------------------------GGCATCCAGA...........................................1650.20100000000001000000
.........................................................................CGA--AAATGGACAGAGGTA----------------GATAGAGAGG...............................................................................................................................................................................................................................................................................................................................................................................................................2850.20100000000100000000
.........................................................................CGA--AAATGGACAGAGGTA----------------GATAGAGAG................................................................................................................................................................................................................................................................................................................................................................................................................2750.20100000000000010000
droSec2
GGGTATAGAATCTGCATGCCTAATCTTAACTTTTACAATTTTGTAGTTCCTGTATTTCC-----------AGACGA--AAATGGACAGAGGTA----------------GATAGAGAGA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GATGTTTCACTTAAACATCCGATAGGAAAAAGTTACTTTTTAGC--------------ATAGGAGATCTATGTATACCC------AATTATATTATAAT---TATG---TCTTAT---TTTTTCTAATGTATTACA-----------------------------GGCATCCAGATAAAGTTAAAAATGATTACGGTGCCGAAAAGTTT--ATACAAASizeHit CountTotal NormTotalM054
Female-body
V113
Male-body
V114
Embryo
V115
Head
No Reads
dm3
AAAAATTCTTTCTAT----TTATACGCGGCCTTGA-----------------AAAT--------------------------------------------------------------------TGTGAT-------------------------------------------------------------AT-------------------------------CTTCTTCGGGTGCAAGATATTGT------GATTC-----------CATATAACTCTTAGTATTCTTTTTGGTTAGACTTATTTCACTTAGTCATCCGATGGGAAAAAGTTAGTTTTTAGC--------------ATAGGAGAAATATGCATACCC------AATTAAATTATAAT---TATG---GCTTAT---TCTTTTTAATATATTACA-----------------------------GGCATCCTGATAAAGTTAAAAATGATTACGGTGCCGAAAAGTTC--ATACAAASizeHit CountTotal NormTotalGSM154618
Ovary
GSM154620
Ovary
GSM154621
Ovary
GSM154622
Ovary
GSM180328
Head
GSM180329
Mixed-body
GSM180330
Embryo
GSM180331
Embryo
GSM180332
Embryo
GSM180333
Embryo
GSM180334
Larvae
GSM180335
Disc
GSM180336
Pupae
GSM180337
S2
GSM231091
Ovary
GSM239041
Head
GSM239050
Head
GSM239051
S2
GSM239052
S2
GSM246084
Head
GSM266765
S2
GSM280082
Ovary
GSM280083
Ovary
GSM280084
Ovary
GSM280085
Testis
GSM280086
Ovary
GSM280087
S2-NP
GSM280088
S2-NP
GSM312995
Head
GSM313160
Head
GSM313161
Head
GSM313162
Head
GSM313163
Head
GSM313164
Head
GSM313165
Head
GSM343287
Embryo
GSM379050
Ovary
GSM379051
Ovary
GSM379052
Ovary
GSM379053
Ovary
GSM379054
Ovary
GSM379055
Ovary
GSM379056
Ovary
GSM379057
Ovary
GSM379058
Ovary
GSM379059
Ovary
GSM379060
Ovary
GSM379061
Ovary
GSM379062
Ovary
GSM379063
Ovary
GSM379064
Ovary
GSM379065
Ovary
GSM379066
Ovary
GSM379067
Ovary
GSM424739
S2
GSM424740
S2
GSM424741
S2
GSM467729
Female-body
GSM467730
Female-body
GSM467731
Female-body
M002
CS
M003
Male-body
M004
Male-body
M005
ML-DmD32
M006
ML-DmD32
M029
OSC
M030
OSC
M031
OSC
M032
S2-R+
M033
S2-R+
M034
S2-R+
M035
S2-R+
M036
S2-R+
M037
S2-R+
M038
S2-R+
M039
S2-R+
M048
S2-R+
OSS2
OSS
OSS6
OSS
OSS7
OSS
OSS8
OSS
S1
Head
S10
Embryo
S11
Embryo
S12
Embryo
S13
Embryo
S14
Embryo
S15
S2-GMR
S16
Kc
S17
Larvae
S18
Larvae
S19
Pupae
S2
Head
S20
Pupae
S21
Disc
S22
Head
S23
Female-body
S24
Male-body
S25
Larvae
S26
Larvae
S27
Pupae
S28
Pupae
S29
Head
S3
Male-body
S30
S2-GMR
S31
S2
S32
S2
S33
Kc
S34
Kc
S35
Kc
S4
Female-body
S5
Disc
S6
Embryo
S7
Embryo
S8
S2
S9
Embryo
SRR001337
Head
SRR001338
Head
SRR001339
Head
SRR001340
Head
SRR001341
Head
SRR001342
Head
SRR001343
Head
SRR001344
Head
SRR001345
Head
SRR001346
Head
SRR001347
Head
SRR001348
Head
SRR001349
Head
SRR001664
Head
SRR010951
Ovary
SRR010952
Ovary
SRR010953
Ovary
SRR010954
Ovary
SRR010955
Ovary
SRR010956
Ovary
SRR010957
Ovary
SRR010958
Ovary
SRR010959
Ovary
SRR010960
Ovary
SRR014268
Embryo
SRR014269
Embryo
SRR014270
Embryo
SRR014271
Embryo
SRR014272
Embryo
SRR014273
Ovary
SRR014274
Ovary
SRR014275
Ovary
SRR014276
Ovary
SRR014277
Ovary
SRR014278
Ovary
SRR014279
Ovary
SRR014280
Ovary
SRR014281
Ovary
SRR014282
Ovary
SRR023197
S2
SRR023399
S2
SRR023400
S2
SRR023402
S2
SRR023407
S2
SRR029028
S2
SRR029029
S2
SRR029030
S2
SRR029031
S2
SRR029032
S2
SRR029033
S2
SRR029608
Head
SRR029633
Head
SRR030145
gb3
SRR031692
Head
SRR031693
Head
SRR031694
Head
SRR031696
Head
SRR031697
Head
SRR031698
Head
SRR031699
Head
SRR031700
Head
SRR031701
Head
SRR031702
Head
SRR031703
Head
SRR031704
Head
SRR032092
S2
SRR032093
S2
SRR032094
S2
SRR032095
S2-NP
SRR032096
S2-NP
SRR032152
Head
SRR060643
Testis
SRR060644
Ovary
SRR060645
Testis
SRR060646
Ovary
SRR060647
Ovary
SRR060648
Ovary
SRR060649
Ovary
SRR060650
Testis
SRR060651
Ovary
SRR060652
Testis
SRR060653
Ovary
SRR065151
Ovary
SRR065152
Ovary
SRR065153
Ovary
SRR065154
Ovary
SRR065155
Ovary
SRR065800
Ovary
SRR065801
Ovary
SRR065802
Ovary
SRR065803
Ovary
SRR065804
Ovary
SRR065805
Ovary
SRR065806
Ovary
SRR065807
Ovary
SRR097865
S2-NP
SRR097866
S2-NP
SRR097867
S2-NP
SRR298536
Ovary
SRR298537
Ovary
SRR298711
Ovary
SRR298712
Ovary
SRR317110
Ovary
SRR317111
Ovary
SRR317112
Ovary
SRR317113
Ovary
SRR317114
Ovary
SRR317115
Ovary
SRR317116
Ovary
SRR317117
Ovary
SRR341115
S2
SRR341116
S2
SRR341117
S2
SRR341118
S2
SRR351332
Mixed-body
SRR351333
Mixed-body
T004
OSC
T005
CME-L1
V001
Embryo
V002
Embryo
V003
S2
V006
Female-body
V007
Head
V008
S2
V009
CME-L1
V010
ML-DmD20-C5
V011
Sg4
V012
Male-body
V013
Head
V014
DTT
V015
DreRFHV
V018
Kc167
V019
GM2
V020
S2-R+
V021
ML-DmD21
V022
ML-DmD32
V023
Head
V024
Kc167
V025
S2-R+
V026
1182-2H
V027
ML-DmD21
V028
CME-W1-Cl.8+
V029
ML-DmD9
V030
ML-DmD8
V031
GM2
V032
S1
V033
CME-W1-Cl.8+
V034
ML-DmD16-C3
V035
ML-DmD32
V036
ML-DmD20-C5
V037
S2
V038
S2
V063
Ovary
V0632
Ovary
V064
Ovary
V0642
Ovary
V065
Ovary
V0652
Ovary
V066
Ovary
V0662
Ovary
V067
S2-NP
V073
mbn2
V074
S3
V075
ML-DmBG1-C1
V076
ML-DmBG3-C2
V077
Head
V078
Head
V079
Head
V080
Head
V081
Embryo
V082
Embryo
V083
Male-body
V084
Female-body
V085
CME-W2
V086
Female-body
V088
Ovary
V0882
Ovary
V089
Ovary
V0892
Ovary
V090
Male-body
V091
fGS/OSS
V092
Male-body
V093
Male-body
V094
S2-R+
V095
S2-R+
V096
Ovary
V097
Ovary
V098
Ovary
V125
ML-DmD9
V126
CME-L1
V127
G2
V128
S3
V129
ML-DmBG1-C1
V130
ML-DmBG3-C2
V131
ML-DmD16-C3
V132
ML-DmD32
V133
Sg4
V134
ML-DmD8
V135
CME-W2
V136
Male-body
V137
Head
V138
Male-body
V139
Female-body
V140
Female-body
V141
Female-body
V142
Female-body
V144
OSC
V145
S2
V146
S1
V147
1182-2H
V148
mbn2
GSM1528798
follicle cells
................................................................................................................................................................................................T-------------------------------CTTCTTCGGGTGCAAGATATTGT------GAT......................................................................................................................................................................................................................................................................2723.5070000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001020300000
.................................................................................................................................................................................................................................TTCTTCGGGTGCAAGATATTGT------.........................................................................................................................................................................................................................................................................2222.5050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAAAAATGATTACGGTGCCGAAAAGT...........2622.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000100200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................TTC-----------CATATAACTCTTAGTATTCTTT...................................................................................................................................................................................................................................2522.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCTGATAAAGTTAAAAATGATTACGG......................2722.0040000000000000000000000000000000000000000000000000000000000000000000000000000011100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTACGGTGCCGAAAAGTTC--ATACAAA2722.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000400000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................TTCTTCGGGTGCAAGATATTGT------GAT......................................................................................................................................................................................................................................................................2521.5030000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000
........................................................................................................................................................................................................................................................................................TAGTATTCTTTTTGGTTAGACTTAT.....................................................................................................................................................................................................................2521.5030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................TGGGAAAAAGTTAGTTTTTAGC--------------ATA.............................................................................................................................................................2521.5030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..AAATTCTTTCTAT----TTATACGCGGCC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2521.5030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................CTCTTAGTATTCTTTTTGGTTAGACT........................................................................................................................................................................................................................2621.5030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACGGTGCCGAAAAGTTC--ATACAAA2521.5030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................TTGGTTAGACTTATTTCACTT..............................................................................................................................................................................................................2121.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................TTAGTCATCCGATGGGAAA.............................................................................................................................................................................................1921.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................TCTTTTTGGTTAGACTTATTTCACT...............................................................................................................................................................................................................2521.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................TAGTCATCCGATGGGAAAAAGTTAGT.....................................................................................................................................................................................2621.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................ACTTAGTCATCCGATGGGAAA.............................................................................................................................................................................................2121.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000
..........................................................................................................................................................................................................................................TGCAAGATATTGT------GATTC-----------CATATAAC.................................................................................................................................................................................................................................................2621.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............T----TTATACGCGGCCTTGA-----------------AAA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2021.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000
..............................................................................................................................................................................................................................................................................................................TATTTCACTTAGTCATCCGATGGGAA..............................................................................................................................................................................................2621.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................TGTGAT-------------------------------------------------------------AT-------------------------------CTTCTTCGGGTGCAAGA.....................................................................................................................................................................................................................................................................................2521.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000101000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTACGGTGCCGAAAAGTTC--ATACA..2421.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000101000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................TCACTTAGTCATCCGATGGGAAAAAGT.........................................................................................................................................................................................2721.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
.......................................................................................................................................................................................................................................................................................................................................AAAAGTTAGTTTTTAGC--------------ATAGGAG.........................................................................................................................................................2420.5010000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................CTTAGTATTCTTTTTGGTTAGACT........................................................................................................................................................................................................................2420.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGATAAAGTTAAAAATGATTACGGT.....................2520.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................TGTGAT-------------------------------------------------------------AT-------------------------------CTTCTTCGGGTGCAAGATA...................................................................................................................................................................................................................................................................................2720.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................TATATTACA-----------------------------GGCATCCTGATAAAGT.....................................2520.5010000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGATTACGGTGCCGAAAAGTTC--ATA....2520.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........TCTAT----TTATACGCGGCCTTGA-----------------AAAT--------------------------------------------------------------------TG........................................................................................................................................................................................................................................................................................................................................................................................................2720.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................CTTTTTGGTTAGACTTATTTCACTTAG............................................................................................................................................................................................................2720.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................T-------------------------------------------------------------AT-------------------------------CTTCTTCGGGTGCAAGATATTGT------.........................................................................................................................................................................................................................................................................2620.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................TTC-----------CATATAACTCTTAGTATTCTTTT..................................................................................................................................................................................................................................2620.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................TTGT------GATTC-----------CATATAACTCT..............................................................................................................................................................................................................................................2020.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................TGAT-------------------------------------------------------------AT-------------------------------CTTCTTCGGGTGCAAGATA...................................................................................................................................................................................................................................................................................2520.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.AAAATTCTTTCTAT----TTATACGCGGC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2520.5010000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................TTGGTTAGACTTATTTCACTTAGTCATC.......................................................................................................................................................................................................2820.5010000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................TATACGCGGCCTTGA-----------------AAAT--------------------------------------------------------------------TGTGAT-------------------------------------------------------------AT-------------------------------......................................................................................................................................................................................................................................................................................................2720.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................TAGACTTATTTCACTTAGTCATCCGA....................................................................................................................................................................................................2620.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAAAGTTAAAAATGATTACGGTGC...................2520.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAAAAATGATTACGGTGCCGAAAAG............2620.5010000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTACGGTGCCGAAAAGT...........1920.5010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTTAAAAATGATTACGGTGCCGA................2420.5010000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................ACTTAGTCATCCGATGGGAAAAAGT.........................................................................................................................................................................................2520.5010000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................TTCTTTTTGGTTAGACTTATTT...................................................................................................................................................................................................................2220.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................TTTAATATATTACA-----------------------------GGCATCCTGA...........................................2420.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000
............................................................................................................................................................................................................................................................................................ATTCTTTTTGGTTAGACTTATT....................................................................................................................................................................................................................2220.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................GATGGGAAAAAGTTAGTTTTTAGC--------------A...............................................................................................................................................................2520.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
................................................................................................................................................................................................................................CTTCTTCGGGTGCAAGATATTGT------GAT......................................................................................................................................................................................................................................................................2620.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................T-------------------------------------------------------------AT-------------------------------CTTCTTCGGGTGCAAGATATTGT------GA.......................................................................................................................................................................................................................................................................2820.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................TAGTTTTTAGC--------------ATAGGAGAAATATG..................................................................................................................................................2520.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAAAGTTAAAAATGATTACGGTGCCGAA...............2820.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................C--------------ATAGGAGAAATATGCATACCC------AATTA................................................................................................................................2720.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGTTAAAAATGATTACGGTG....................2120.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................AGTTAGTTTTTAGC--------------ATAGGAG.........................................................................................................................................................2120.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................T--------------------------------------------------------------------TGTGAT-------------------------------------------------------------AT-------------------------------CTTCTTCGGGTGCAAGA.....................................................................................................................................................................................................................................................................................2620.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................TAGTCATCCGATGGGAAAAAGTTAG......................................................................................................................................................................................2520.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGATAAAGTTAAAAATGATTACGG......................2420.5010000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................GAT-------------------------------------------------------------AT-------------------------------CTTCTTCGGGTGCAAGA.....................................................................................................................................................................................................................................................................................2220.5010000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGTTAAAAATGATTACG.......................1920.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................TATAACTCTTAGTATTCTTTTTGGT..............................................................................................................................................................................................................................2520.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATCCTGATAAAGTTAAA.................................1820.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................TCATCCGATGGGAAAAAGTTAGTTTTT.................................................................................................................................................................................2720.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGATTACGGTGCCGAAAAGTTC--.......2220.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................ATAGGAGAAATATGCATACCC------.....................................................................................................................................2120.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................TCCGATGGGAAAAAGTTAGTTTTTA................................................................................................................................................................................2520.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................TCCGATGGGAAAAAGTTAGTTTTTAG...............................................................................................................................................................................2620.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................TACGCGGCCTTGA-----------------AAAT--------------------------------------------------------------------TGTGAT-------------------------------------------------------------.......................................................................................................................................................................................................................................................................................................................................2320.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................TTGGTTAGACTTATTTCACTTAGTCATCCGA....................................................................................................................................................................................................3120.5010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................C--------------ATAGGAGAAATATGCATACCC------.....................................................................................................................................2220.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
.....................................................AAT--------------------------------------------------------------------TGTGAT-------------------------------------------------------------AT-------------------------------CTTCTTCGGGTGC.........................................................................................................................................................................................................................................................................................2420.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droEre2
GTCTCTGGAAGCTGCATCCTTAATCTCAACATTCTAGCTTTTGTAGTTCCTAAGATCAAGGCGTTCATACGGACAGACGGT----------------------------TATGGACAGTTCAACTTGGCTTT-A------------------------------------------------------------------------------------------------------------------------ACTTTGTATAACCAATAGAAATTTTCTTA---------------------------------------------------AGTTATAAGC----ACAGAAGGT-AAGAATGTAATATACACATAT------AGGAACCCTATAAT---TAGT---TTGTATTACTTTTCAAAATATTTT-------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM055
Female-body
M057
Embryo
V060
Head
V040
Embryo
V107
Male-body
V108
Head
GSM1528801
follicle cells
..............................................................................................................................................................................................................................................................................................................................................................................AATATACACATAT------AGGAACCCTA...........................................................................................................................2311.0011000000
droYak3
GCCTCTGGAGTCAGTATGCTTAATCTCAACTTTCTAGCTTTTGTAGTTCCTGAGATCACAGCCTTT-------------------------------------------------------------------------------------------------------------------------------------------------------------TACTCTACGAGTAACGGGTATAATTAGATAAAATC-----------AAATTAATTCCCAGTTTCTAC---------------------------------CTGAATCAGTCTCAGTTTAAA--------------ATTGCTGCATTATGCAT---T------AGTTAAGTTAGTAA---TTAA--ATTTTAT---TTTTGCTTATGA-------------------------------------------AATAAAACGAAAAA------------------------------TSizeHit CountTotal NormTotalM026
Head
M043
Female-body
M056
Embryo
V046
Embryo
V052
Head
V058
Head
V120
Male-body
SRR1275488
Male larvae
SRR1275486
Male prepupae
SRR1275484
Male prepupae
GSM1528802
follicle cells
.....TGGAGTCAGTATGCTTAATCTCAACT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................26120.33400400000000
...TCTGGAGTCAGTATGCTTAATCTCAAC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................27100.20202000000000
.....TGGAGTCAGTATGCTTAATCTCAAC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25120.17200200000000
.....................AATCTCAACTTTCTAGCTTTT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.10202000000000
...............................................................................................................................................................................................................................TACTCTACGAGTAACGGGTATAATTAGA...........................................................................................................................................................................................................................................................................28140.07101000000000
.....TGGAGTCAGTATGCTTAATCTCAACC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................26180.06100100000000
droEug1
AAG-----AATCTTCATGGATAAGCTCAACTTTGTATCTCTTATAGTTCCTGAGATCTCAGCGTTCATACGGACAGACGGACA----GACGCATGGACAGATGGACGGACATGGCTCAATCGACTTCGCTATTGATCCTAATCAAGAATAAATATACTGTATAGGGTCGGAAACGCTTCCTTCGACCTATTACATACTTTTCAACGAATCTAGTATACCCTTTTTCTCTACGACTAACGGGTAT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AACAAAGCTAAAA--------GGTGTCCAAAAATCTAATCGGAAASizeHit CountTotal NormTotal
No Reads
droBia1
AGCCCAGAAATCTGCATGCCAAATCTGCCGGTTCTAGTTC--ATAT-CTCCGATATCTCATCGTTCATACGGACAGACATACAGACAG--------ACATACAGATGGACATGGCTAGATCAACTATGCTTGTGATCTTGATCAAGAATAAATATACTTTATGGAGTCGGAA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ASizeHit CountTotal NormTotal
No Reads
droTak1
AGCCCAAGAATATGTGTGGAAAATCTCAACCTTCTAGATTTTGTAGTTTCTGAGATCTCAGCGTTCATACGGACGGACA--------G----------------ACGGACATGGCAATATCGACTCGGCTAGTGACCCTGATCAAGAATATATATACTTTATAGGGTCGGAAACGCTTCCTTCTCCCTGTTACATAC-------------TAATATACCCTTTTACTCTACGAGTAACGGGTATA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATACATTAAAATTTGTTACGAC----AAACATTT--TCTCAATSizeHit CountTotal NormTotal
No Reads
droEle1
ACTACTAGAATCTGCATGCAAAGTTCCAAATGTCTAGATTTAATAATTTCCTAGATCTTGACATACATACAGACGGACATA----------------------------AAAAGA--------CTCTGTT-------------------------------------------------------------ATATAT-------------TAAGA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGCG-TAATGC---TCTTACAAC--------CGAATGACAAAAAGCTAAATTTTCAACGTGGATTTCGAAGTGGACCCA----------------------------------ASizeHit CountTotal NormTotal
No Reads
droRho1
ACTCCTAAAATCTACATGCAAAATGCTAA---TCTAGCTTTTATAGTTTCCGAGATCTCAGCGTTCATACGGACAGACAAACGGACAG----------------ACGGACATGGCTAGATCGACTCCGCTAGAGATCCTGATCAAGAATATATATACTTTATAGGGTCGGAA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ASizeHit CountTotal NormTotal
No Reads
droFic1
TTTTCTTAAAAAT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGGAAAACTATACCGTTTAGCTGCCATGGAAAAGTTCAAAAAATCTGTATAGAATTAAGGGAAATAATATTATAAT---TACG---TTGTAT---TTTTTCATTTATG--CACGATTTTTAGA--------------------------ATATAGAGTTTTTAACGACTAT--TAAATTAAATTTC--ATAAAAASizeHit CountTotal NormTotal
No Reads
droKik1
AAAAAGAAAATCTTGAACTTAAATAT---------------------------------------------------------------------------------------------------------------------------------ACTA--------------------------------------------------------------------------------------------------------------CATAAATTATCTAGTAA-------------------------------------------------------------------------------------------------------TTATTGTGGT---TAGA---TCTTAT---TTTTTCCTGTGTATTTTT-----------------------------GGCCTCTTGACAG---------------------------------------ASizeHit CountTotal NormTotal
No Reads
droAna3
AAGGATAATTTTTAG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T--------------ACAAAA----------TATTT------TAATATAACATATT---TATT---TATTAT---ATTATTTATTATAATATA-----------------------------AATATTATTATAAAAATAAAAA------------------------------TSizeHit CountTotal NormTotalM044
Female-body
M058
Embryo
V039
Embryo
V055
Head
V105
Male-body
V106
Head
No Reads
droBip1
TAAAT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATGAT---TATT---TCTTTT---CATAATTATTATTTTGTG-----------------------------ATTTTAAAAATGAAACTAAATATGATTACGGTCCCG-----------------SizeHit CountTotal NormTotal
No Reads
dp5
CAACTCTATTACG----------A------------------ATAT-TTTTCATATTTCTTCGCAAGTG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGGCACA----------------------------------------------------------------------------------------------------GGCACGGAAAAA--------------------------------------------------------------------------------------------------------------------GTTAACATTAAAAGCGATGGCGGTGCCGAAAA------------GSizeHit CountTotal NormTotalM022
Male-body
M040
Female-body
M059
Embryo
M062
Head
V043
Embryo
V051
Head
V112
Male-body
SRR902010
Ovary
SRR902011
Testis
SRR902012
CNS imaginal disc
No Reads
droPer2
AATTATTTTTTA-----------------------------CATAGTGTAATAAATATT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTCA-----------------------------GGCATCCAGACAAAAATCAGATTCCTGGAGCCGAAGAAAAGTTT--GTTGAGASizeHit CountTotal NormTotalM021
Embryo
M042
Female-body
V042
Embryo
V050
Head
V057
Head
V111
Male-body
No Reads
droWil2
AGATCTA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCTGTTTATCA------CAGTAAATGATAATGATTATC---GTTTCG---TCTTTC---AATCTTTTA-----------------------------GGCATCCTGATAAAAATAAAAATCCCGAAGCTGAAGAAAAATTT--GTCGAGASizeHit CountTotal NormTotalM020
Head
M045
Female-body
V117
Male-body
V118
Embryo
V119
Head
No Reads
droVir3
TATGATTATTT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GACTATATATTAAT---TATA---CTTTAT---TTTTTCTAATCGCTTTCA------------------------GTTTTGGCTTCTGGGTGAAGTCA----------------------------------ASizeHit CountTotal NormTotalM027
Male-body
M028
Head
M047
Female-body
M061
Embryo
SRR060654
Ovary
SRR060655
Testis
SRR060656
Ovary
SRR060657
Testis
SRR060658
Ovary
SRR060659
Testis
SRR060660
Ovary
SRR060661
Embryo
SRR060662
Embryo
SRR060663
Embryo
SRR060664
Male-body
SRR060665
Female-body
SRR060666
Male-body
SRR060667
Female-body
SRR060668
Male-body
SRR060669
Female-body
SRR060670
Testis
SRR060671
Male-body
SRR060672
Female-body
SRR060673
Ovary
SRR060674
Ovary
SRR060675
Ovary
SRR060676
Ovary
SRR060677
Ovary
SRR060678
Testis
SRR060679
Testis
SRR060680
Testis
SRR060681
Testis
SRR060682
Embryo
SRR060683
Testis
SRR060684
Embryo
SRR060685
Embryo
SRR060686
Embryo
SRR060687
Embryo
SRR060688
Ovary
SRR060689
Testis
SRR1106712
embryo_0-2h
SRR1106713
embryo_0-2h
SRR1106714
embryo_2-4h
SRR1106715
embryo_4-6h
SRR1106716
embryo_4-6h
SRR1106717
embryo_6-8h
SRR1106718
embryo_6-8h
SRR1106719
embryo_8-10h
SRR1106720
embryo_8-10h
SRR1106721
embryo_10-12h
SRR1106722
embryo_10-12h
SRR1106723
embryo_12-14h
SRR1106724
embryo_12-14h
SRR1106725
embryo_14-16h
SRR1106726
embryo_14-16h
SRR1106727
larvae
SRR1106728
larvae
SRR1106729
mixed whole adult body
SRR1106730
embryo_16-30h
V047
Embryo
V053
Head
V116
Male-body
GSM1528803
follicle cells
No Reads
droMoj3
AAAATTGACTTTTTT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTATGTATAACA------GGCAATAACAGGAC---TATT---TCTGAC---TTTTTTCTATGTATAACA-----------------------------GGCA-------------------------------------------------SizeHit CountTotal NormTotalM046
Female-body
V041
Embryo
V049
Head
V056
Head
M060
Embryo
V110
Male-body
...........TTTT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTATGTATAACA------GGCAA................................................................................................................................21200.051100000
..................................................................................................................................................................................................................................................................................................................................................................................TGTATAACA------GGCAATAACAGGAC---TAT.................................................................................................................26200.051000010
droGri2
TTTGCTTGCCTCA----------ATTTTGTTTTTTTAATTTTTTTATTTTTGTTTACCT-----------AAACGA--AA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ASizeHit CountTotal NormTotalM041
Female-body
V109
Male-body
No Reads

Generated: 05/18/2015 at 09:27 AM