ID:dsi_4442 |
Coordinate:3l:8249706-8249855 + |
Confidence:Candidate |
Type:Unknown |
[View on UCSC Genome Browser {Cornell Mirror}] |
| Legend: | mature | star | mismatch in read |
|
|
|
|
| -18.2 | -18.2 | -18.0 |
 |
 |
 |
intergenic
No Repeatable elements found
|
CGGCAGCAATAAAAAAAAGCAACACAGCAACAACAAGCAGGCAGCGAAACGTAAGGAAAAATCTACAACAAGTGTGCGAAAATTAATTATTACTAAGTGTGTCACTAATTTAATTTGGAATCGCAGTTGCGCAGCGTGCAAATCATTCAGATTTATGTGAAGTCTCTCGGGCAGCAAAAAACAAAAAACCAAAAAAAAAAATAACGAAAAACTGTAAAACAGAGAAAACAGTGGCGTACCCCCCCGAAGT
**************************************************......................(((.(((..................((((...((((......))))...)))).((((((...)))))).......((((((.....)))))).))).)))...........................************************************************** |
Read size | # Mismatch | Hit Count | Total Norm | Total | M025 embryo |
M053 female body |
SRR618934 dsim w501 ovaries |
SRR553486 Makindu_3 day-old ovaries |
SRR553487 NRT_0-2 hours eggs |
SRR553488 RT_0-2 hours eggs |
SRR902008 ovaries |
SRR902009 testis |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ........................................................................................................................................................TTATGTGAAGTCTCTCGGGCAGC........................................................................... | 23 | 0 | 1 | 2.00 | 2 | 2 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| ...............................................................................................................................................................................................................AAAACTGTAAAACAGAGAAAACAGTGGC............... | 28 | 0 | 1 | 1.00 | 1 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 |
| ...............................................................................................AGTGTGTCACTAGTTTAATTT...................................................................................................................................... | 21 | 1 | 1 | 1.00 | 1 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 |
| .......................................................................................................................ATCAGAGTTGCGCAGCG.................................................................................................................. | 17 | 2 | 15 | 0.33 | 5 | 0 | 0 | 0 | 0 | 3 | 2 | 0 | 0 |
| .............................................GAAACGTAAGGACAAA............................................................................................................................................................................................. | 16 | 1 | 3 | 0.33 | 1 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 |
| .....................................................................................................................................................................TTCGGGCAGTAAAAAAAAAAAAA.............................................................. | 23 | 3 | 20 | 0.05 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 |
| ................................................................................................................................................................................AAAAACAAAAAACGAAAAAAAA.................................................... | 22 | 1 | 20 | 0.05 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 |
|
GCCGTCGTTATTTTTTTTCGTTGTGTCGTTGTTGTTCGTCCGTCGCTTTGCATTCCTTTTTAGATGTTGTTCACACGCTTTTAATTAATAATGATTCACACAGTGATTAAATTAAACCTTAGCGTCAACGCGTCGCACGTTTAGTAAGTCTAAATACACTTCAGAGAGCCCGTCGTTTTTTGTTTTTTGGTTTTTTTTTTTATTGCTTTTTGACATTTTGTCTCTTTTGTCACCGCATGGGGGGGCTTCA
**************************************************......................(((.(((..................((((...((((......))))...)))).((((((...)))))).......((((((.....)))))).))).)))...........................************************************************** |
Read size | # Mismatch | Hit Count | Total Norm | Total | SRR553487 NRT_0-2 hours eggs |
SRR618934 dsim w501 ovaries |
SRR553488 RT_0-2 hours eggs |
|---|---|---|---|---|---|---|---|---|
| ..............................................................................................................................................................................................................................TCTTTTGTCACCGAAGGGTG........ | 20 | 3 | 5 | 0.20 | 1 | 1 | 0 | 0 |
| ................................................................................................................................................................TCAGAGAGACCGACGTTATTT..................................................................... | 21 | 3 | 6 | 0.17 | 1 | 1 | 0 | 0 |
| ......GTTATTTTTTTCCGTTGTCTTGT............................................................................................................................................................................................................................. | 23 | 3 | 9 | 0.11 | 1 | 1 | 0 | 0 |
| ................................................TGGATGCCTTTTTAGAT......................................................................................................................................................................................... | 17 | 2 | 15 | 0.07 | 1 | 0 | 1 | 0 |
| .................................................................................................................................GCGTCGCACGTGCAGGAAG...................................................................................................... | 19 | 3 | 20 | 0.05 | 1 | 0 | 0 | 1 |
| ................................................................................................................................................................................TTTTTGTTTTTTGGTT.......................................................... | 16 | 0 | 20 | 0.05 | 1 | 0 | 1 | 0 |
Generated: 04/24/2015 at 10:47 AM