ID:

dsi_4441

 Coordinate:

3l:12546551-12546700 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-10.7 -10.6 -10.6

Flybase annnotation

exon [3l_12546137_12546550_+]; CDS [3l_12546137_12546550_+]; intron [3l_12546551_12547055_+]

No Repeatable elements found

Sense Strand Reads

##################################################--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
AGCCGCCGCATCTGGAGCCAGCTTTATGGGCTTCAGTTTGCCCCCTGGAAGTGAGTAGAACTCATCAACCCGTCCATCACTTCCTTAACATTTCCCTCCCACAATGCACATTTCTAAATTGGTTTTATTCTAGCAAAAGATAAAAAAATATGAGCAAAAGACAAAAAGACATCTTAGTCGAAACATCTAAAGATCTTAAATGTTATCAAGAATTTAATTGAAGTATCATGAAGGACCTTTTGTTTTCGGA
**************************************************((((((...)))))).......................................(((.(((...........((((((.((......))))))))....))).)))..(((......(((......)))......)))............************************************************** 		Read size # Mismatch Hit Count Total Norm Total M023
head
 M025
embryo
 M053
female body
 O001
Testis
 SRR618934
dsim w501 ovaries
 SRR553488
RT_0-2 hours eggs
 SRR553487
NRT_0-2 hours eggs
 SRR553485
Chicharo_3 day-old ovaries
 GSM343915
embryo
...........................................................................................................................................................................................................................GAAGTATCATGAAGGACC............. 18 0 1 2.00 2 2 0 0 0 0 0 0 0 0
................................................AAGTGAGTAGAACTCATC........................................................................................................................................................................................ 18 0 1 2.00 2 0 2 0 0 0 0 0 0 0
..................................................................................CCTTAACATTTCCCTCCCACAATGCACA............................................................................................................................................ 28 0 1 1.00 1 0 0 1 0 0 0 0 0 0
........................TATGGGCTTCAGTTTGCCCC.............................................................................................................................................................................................................. 20 0 1 1.00 1 0 0 0 1 0 0 0 0 0
...............AGCCAGCTTTATGAGCTA......................................................................................................................................................................................................................... 18 2 3 0.33 1 0 0 0 0 1 0 0 0 0
................GCCAGCTTTATGAGCT.......................................................................................................................................................................................................................... 16 1 6 0.17 1 0 0 0 0 1 0 0 0 0
....................................................................................................................................................................................................................................TGAAGGACCGTTTGTAT..... 17 2 8 0.13 1 0 0 0 0 0 0 1 0 0
..........................................................................................................................................................................................................................AGAAGTATCCTGAAGGAACT............ 20 3 8 0.13 1 0 0 0 0 0 1 0 0 0
............................................................................................................................................................................................................................AAGTATCCTGAAGGA............... 15 1 9 0.11 1 0 0 0 0 0 1 0 0 0
................................................................................................................................................................................GTCGAAACATCTTAA........................................................... 15 1 10 0.10 1 0 0 0 0 0 0 0 1 0
.............................................................................................................................................................................................................................AGTATCCTGAAGGAACT............ 17 2 13 0.08 1 0 0 0 0 0 0 1 0 0
..........................................................................................................................................................................................................................AGAAGTATCCTGAAGGA............... 17 2 14 0.07 1 0 0 0 0 0 1 0 0 0
..................................................................................................................................................................ATAAAGACATCTTAGAC....................................................................... 17 2 16 0.06 1 0 0 0 0 0 0 1 0 0
...........................................................................................................................................................................................................................GAAGTGTCCTGAAGGAACT............ 19 3 17 0.06 1 0 0 0 0 0 1 0 0 0
...................................................................................................................ATATTGGTTGTATTCTAGAA................................................................................................................... 20 3 20 0.05 1 0 0 0 0 0 0 0 0 1
........................................................................................................................................................................................................................ATAGAAGTGTCCTGAAGGA............... 19 3 20 0.05 1 0 0 0 0 0 1 0 0 0

Anti-sense strand reads

TCGGCGGCGTAGACCTCGGTCGAAATACCCGAAGTCAAACGGGGGACCTTCACTCATCTTGAGTAGTTGGGCAGGTAGTGAAGGAATTGTAAAGGGAGGGTGTTACGTGTAAAGATTTAACCAAAATAAGATCGTTTTCTATTTTTTTATACTCGTTTTCTGTTTTTCTGTAGAATCAGCTTTGTAGATTTCTAGAATTTACAATAGTTCTTAAATTAACTTCATAGTACTTCCTGGAAAACAAAAGCCT
**************************************************((((((...)))))).......................................(((.(((...........((((((.((......))))))))....))).)))..(((......(((......)))......)))............************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553487
NRT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
 SRR553488
RT_0-2 hours eggs
 SRR553486
Makindu_3 day-old ovaries
 GSM343915
embryo
 M024
male body		 SRR553485
Chicharo_3 day-old ovaries
 SRR902009
testis
...........................................................................................................TGTAAAGATTTAACGAAGATGA......................................................................................................................... 22 3 3 0.33 1 1 0 0 0 0 0 0 0
....................................................................GGGAAGGCAGTTAAGGAAT................................................................................................................................................................... 19 3 12 0.25 3 0 0 0 2 0 0 1 0
....................................................................GGGCAGGCAGTTAAGGAA.................................................................................................................................................................... 18 2 8 0.13 1 0 0 0 0 1 0 0 0
...............................................................................GAAGGAATTGTTAAAGGAG........................................................................................................................................................ 19 2 8 0.13 1 0 0 1 0 0 0 0 0
..............................................................................TCAAGGAATTGTGAAGGGAA........................................................................................................................................................ 20 3 10 0.10 1 0 0 0 0 0 1 0 0
..GGCGGCGCAGGCCTCGGT...................................................................................................................................................................................................................................... 18 2 11 0.09 1 0 1 0 0 0 0 0 0
..................................................................TTGCGCACGGAGTGAAGGA..................................................................................................................................................................... 19 3 13 0.08 1 0 0 0 0 0 0 0 1
................................................................................................................................................................TGTTTTACTGTGGAATC......................................................................... 17 2 14 0.07 1 0 1 0 0 0 0 0 0
...................................................................................................GTGTTAGATGTAAAGATT..................................................................................................................................... 18 2 20 0.05 1 0 0 1 0 0 0 0 0
.................................................................................................................................................................GTTTTTCTGGCGAATCA........................................................................ 17 2 20 0.05 1 0 1 0 0 0 0 0 0
.................GGCCGAAATACCCTAAG........................................................................................................................................................................................................................ 17 2 20 0.05 1 1 0 0 0 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 3l:12546501-12546750 + dsi_4441 AGCCGCCG------------------------CATCT------------------------------GGAGCCAGCTTTATGGGCTTCAGTTTGCCCCCTGGAAGTGAGTAGAAC-------------TCATCAACC-----------------------------------------CGTCCATCACT----TCCTTAACATTTCCCTCCCA---CAATGCACATT------------------TCTAAATTGGTTTT----ATTCTAGCAAAAGATAA--------A---------------------AAAATATGAGCAAAAG-ACAAA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAGACATCTT------AGTC-----------------------------------------------GA-----------------------------AA----------------------------------CATCT------AAAGATCTTAAATGTTATCAAGAATTTAATTGA----------------AGTATCATGAAGGA------------------------C----------C--TTTTGTTTTCGGA
droSec2 scaffold_0:5028851-5029114 + AGCCGCCG------------------------CATCT------------------------------GGTGCCAGCTTTATGGGCTTCAGCTTGCCCCCTGGAAGTGAGTAGAAC-------------TCATCAACC-----------------------------------------CGTCTATCACT----TCTTTAACATTTCCCTCCCA---CAATGCACATT------------------TCTAAATTGGTTTT----ATTCTAGCAAAAGATAA--------A---------------------AAAATATAAGCAAAAGGACAAGAAATTT-ATG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AACATCTTTAGAATAGTC-----------------------------------------------GA-----------------------------AA----------------------------------CATCT------AAAGATCTTAAATGTTATCAAGAATTTAATTGA----------------AGTATCATGAAGCA------------------------C----------C--TTTTGTTTTCGGA
dm3 chr3L:12844773-12845036 + AGCCGCCG------------------------CATCT------------------------------GGAGCCAGCTTTATGGGCTTCAGCTTGCCCCCTGGAAGTGAGTAGAAC-------------TCATCATCC-----------------------------------------CATTCATCACT----TTTTTAACATTTCCCTCCCA---CAATGCACATT------------------TCTAAATTGGTTTT----ATTCTAGCAAAAGATAA--------A---------------------AAAATATGAGCAAAAGGACAAGAAAATT-ATG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AACATCTTTAAAATAGTC-----------------------------------------------GA-----------------------------AA----------------------------------CATCT------AAAGATCTAAAATGTTATCAAGAATTTAATTGA----------------AGTATCATGAACCA------------------------C----------C--TTTTGCTTTCGGA
droEre2 scaffold_4784:12857236-12857517 + AGCCGCCG------------------------CATCT------------------------------GGAGCCAGCTTTATGGGCTTCAGCCTGCCCCCTGGAAGTGAGTAGATA-------------TCGTCAACC---------------------CAGTAGTTG--------AACTCCCCCTC--------ACTTAACATTCCCTTCCCA---CAATGCACTTT------------------TCTAAATTGGTTTT----ATTTTAGCAGAAGAGAA--------A---------------------ATAACATAAGCAAAGCGACAAGAAAATT-ATA-TCTTAAAAGAA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAACATCTTTTAGCAAGTC-----------------------------------------------GA-----------------------------AA----------------------------------CATCT------AAAGATCTAATACGTTATCAAGAATTTCA---A----------------ATGAATATGAAAAA------------------------C----------C--TTCTGCTTTAGGA
droYak3 3L:12920454-12920730 + AGCCGCCG------------------------CATCT------------------------------GGAGCCAGCTTTATGGGCTTCAGCTTGCCCCCTGGAAGTGAGTAGAGC-------------TCATCAACC---------------------TAGTAGTTG--------AACTCCCCATT--------AATTAACATTCCCTTTCCA---CAATGCACTTT------------------TCTAAATTGGTTTT----ATTTTAGCAGAAGAAAA--------A---------------------ATAACATAAGCAAAGGGAGAAGAAAATT-ATG-AATTAGAAGAA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAACCATCTTTAAG-----C-----------------------------------------------AA-----------------------------AA----------------------------------CAATT------TAAGATCTAAAATTTTATCAAGAATTTAA---A----------------AATAATATAAAATA------------------------C----------C--TTCTGCCTTAGAA
droEug1 scf7180000409466:4943253-4943558 + AGCTGCTG------------------------CATCT------------------------------GGAGCTAACTTTATGGGTTTCAGCTTGCCACCAGGAAGTGAGTAGAAC-------------TCATCCTTA---------------------AACTAATTA--------TATTTCCCATCATT----TACTTAACATTCCCCTCCTA---TTATGCACATT------------------ATTAAATTGGTTTT----ATTATTGCAGAAGAAAA--------A---------------------AC---AGAATCATAAAG-----TAA------------------------ATTG-AAGAACTAATTCAA----G----------------------------------------------------------------------------------------------------------------------------------------------------------AA-----------------------CTATTTGA----AATA----------TATTTAAGG-------AAGATTTAA--------------------AATGGAAGCTTTATATTTTAT-------------------------------------TTGGCATT----------------------------------------AAG-ATGCAATATATAATCAAGAAGCAT-TAAGAAGTTTCAAGCATGATTATAGA
droBia1 scf7180000302529:773423-773713 - AGCAGCTG------------------------CATCT------------------------------GGAGCCAGCTTTATGGGCTTCAGCTTGCCCCCAGGAAGTGAGTAAAAC-------------TCATCCTCC---------------------ACGTAGTTC--------TTAC-TCCTTCATT----GAATTAACATTCCCTTCCCA---TAATGCACTTT------------------GTAAAATTGGTTT-----ATTCTTGCAGAAGATAA--------A---------------------GAAACGAAAGAATAAGAAGAAAGGGATGCAAGAAATTAGATGCATGCTAA------------AC----TTAAAGTAATGAA---------------------------------CACGAATTTACCAAACCAGTTTAA-----------------AAAATCATGAAATCTCG---------------------------------------------------------------CAAACTAACCA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAAA------------------------C----------C--TTTAATATTATTT
droTak1 scf7180000415251:204776-205070 - AGCCGCTG------------------------CATCT------------------------------GGAGCCAGCTTTATGGGCTTCAGCCTGCCACCAGGAAGTGAGTATAAC-------------TCATCCATC---------------------AAGTAGTTA--------TTATCCTCATCATT----TATCTCACATTCCTCTCCCA---TATTGCACTTT------------------ATTAAATTGGTTTA----ATTCCCGCAGAAGAAAA--------A---------------------ATAACAAAAGCATAAGGAGAGGAAAATGCAAGAATTC-------------------------CT----TTAAACCTATCTA---------------------------------TATAAATTCATTAAAGCCGTTGAA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AACAATCAAGAAGCTTTAAATAGTAT-------------------------------------TTCCCATA----------------------------------------AAG-ACGTAAAAACTAA-------------------------TACATTTTTAGCA
droEle1 scf7180000491255:1240137-1240459 + AACCGCTG------------------------CAGCC------------------------------GGAGCCAGCTTCATGGGTTTCAGCTTGCCGCCAGGAAGTGAGTTTAAT-------------TTATTTACC---------------------ATGATGTTG--------CATCGACCATAATT----AATTTAACATTTCCCTCCTT---TAATGCACCTT------------------ACTAAATTGATTAA----ACTTTTGCAGAAGATAA--------A---------------------ATAACAAAAGCATAAGGACATGAAAATCCAAAAAA-TAGCAGCATGAAATTAATTA-----------------------------------------------------GCTT------------------------------------------------------------------------------------------------------------------------------------------------TAA----AATGTTTTACGATTTTTGCAATG-------AAAATCTGAAAGTTAAAAAAGGGATTCAAGCAAGAAGC---------------ATCAAATATTAACA---------------------ACTAATC------------------------------------AAGAAGAA------------------------T----------C--GATTAATTACTAA
droRho1 scf7180000766682:21928-22254 + AGCCGCTG------------------------CATCC------------------------------GGAGCCAGCTTTATGGGTTTCAGCTTGCCGCCAGGAAGTGAGTTTAAA-------------GTATTTATC---------------------ATGTAGTTG--------TAAATCAATTCATT----TATTTAACATTCCCCTCCTA---TAATGCACTTT------------------ATTAAATTGATTCA----ACTTTTACAGAAGAAAA--------A---------------------ATAACAAATGCTTAAGGAGATGAAAATCCATGAAATTAACAGCA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGAACATCTCTAAATTAATCA--AAATCTTCTTGA----TATG----------TTTACGATG-------AAGATCTGAAAACTAATGAAAGGTTTTAAGAAAG-TT-------------AGCATG----------------------------AAAATTTCATC------------------------------------AAGAGGCA------------------------TTAAAG-----A--AATAGCATAACGA
droFic1 scf7180000453839:162629-162899 - AGCCGCTG------------------------CATCC------------------------------GGAGCCAGCTTCATGGGCTTCAGCTTGCCGCCAGGAAGTAAGTATAAT-------------CCATACACA---------------------TAGTAGTTT--------TTACTCCGATCATG----TCTTTCACATTCCCTTTCCT---AAACGCACTTT------------------ACTAAATTGGTTTA----C--CTTACAGAAGAATA--------ATCGAAGCATACGGCTAACAAAGTAGAAAATAAT-AAGGGCAGGAAAATT-TTG-------------------------------------------------------------------------------------------------------------------------AAATAATCT--------------------------------------------------------------------------A---ATGTG-----------------------------------------------GAAAGATCTGAAAACTAA---------TCAAACAAAAAT-----------------------------------------AGCTCTACAAACAAATC-------------------------------------------------------------------------------------------AAGA
droKik1 scf7180000302272:491682-491981 + AACTGCCG------------------------CTTCG------------------------------GGAGTCAACTTTATGGGCTTCAGCCTGCCGCCAGGAAGTGAGTAAAGC-------------TTAAACCTA---------------------AATTAATCT--------T--CATTTATCACTTAGTTCATTATCATTTCCTTCCTTTAACTATGCACAAT------------------TTGAATTAGCTTTT----ACTTTTGCTGAAGGAGGTGGTGATAA---------------------A------AAG---AATGACAAGTAA------------------------TCAATAGGAAATGATTCAT----G----------------------------------------------------------------------------------------------------------------------------------------------------------AA-----------------------TGTATAGA----AATA----------TTT--ATTAAAAGGG------------------------AATCGAAATGGAAG-----------------------------------------------------TCATCAAGTATT----AGT----------------AGGATCATTAAAC-CCATAAAGTATAT-------------------------TAATATTATGGAA
droAna3 scaffold_13337:19742954-19743164 - TGCAGGTG---------------CAACTGGGGCCACG------------------------------GGTGTTAGCTTCTTGGGATTTAGCTTGCCGCCAGCAAGTAAGTAAATT-------------CGAAT--CT-----------------------------------------TGTTTTTCATT------TTTAAAATTCATTTTCTT---TGTCGCACATT------------------ATTCATTTTAA------------------------------------------------------------------------------------------------------------------------------AACCATTTCACTGCAAATAGCACCAAGAAAACGGTCCACTATCTC---------------------AAACATGTAGTCTCGAGAATTTCAAGAAA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAATAGCCA
droBip1 scf7180000396360:931355-931619 - AACTGCGG------------------------CCTCG------------------------------GGAGTTAGCTTCTTGGGATTCAGCTTGCCGCCAGGAAGTGAGTAACTT---------------AA-AATT-----------------------------------------TATTTATTTTT----ATTTTAAAAATCATTTTATT---CGTTGCACATT------------------ATTTATTT-----------------------------------------------------------------------------------------------------------------------------TTAAACCCATCTCACTGCCAGTATCATCAAGAAAGCAGTCTAATGACTC---------------------AAACACTC-----------------------------------------------------------------------------------CATCTT------AGTTGACAAAATTTCAAGATACAATA-------------------------GCAAGATCAAACA-----------------------------------------------------------------------------ACTAATCAAGATAATAA---C----------------AATAA-CTGGGATA------------------------T----------T--TTTTGTTGCCAAA
dp5 XR_group6:11621353-11621574 - -GCCGGCG------------------------CTGCG------------------------------GGTGCCAGTTTTATGGGCTTCAGTCTGCCGCCAGGAAGTGAGTAATGCAATCCTTCAGA------------TATCCCCACACACATGTTCA---------TTACTTAT---------------------T--------------------CACGCATAAC------------------CATGATTTGGCCTTCAACTTTTTAGCGGAAAGTA----------------------------------AAAAATGCTAAAAGGCAAGCAAGTT--------------------------------------------------------------------------------------------------------------------------CCAAGAAAATCAAGAAATCAAGAGCCCCCCAC------------TCATTTTAT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGTTATC-------------------------------------------------------------------------------------------AAAA
droPer2 scaffold_20:1546254-1546475 - -GCCGGCG------------------------CTGCG------------------------------GGTGCCAGTTTTATGGGCTTCAGTCTGCCGCCAGGAAGTGAGTAATGCAATCCTTCAGA------------CAATCCCACACACATGTTCA---------TTACTTAT---------------------T--------------------CACGCATAAC------------------CATGATTTGGCCTTC---AACTTTTTAGAGGAAA-------------------------------GTAAAAAATGCTAAAAGGCAAGCAAGTT--------------------------------------------------------------------------------------------------------------------------CCAAGAAAATCAAGAAATCAAGAGCCCCCCAC------------TCATTTTAT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGTTATC-------------------------------------------------------------------------------------------AAAA
droWil2 scf2_1100000004511:5453279-5453625 - TGCCGCCG------------------------C------------------------------------TGCCAGTTTTATGGGCTTCAGCTTGCCACCCGGAAGTGAGTATTGAAGTCATCTCCTTAACACAGACGAATATTCCATTCATT--------------------------CAATCATTATT----CATTTAATTTTTATTT----------TGCTTAGCCAAAACGGAAAGCACTTGACTC---AGATCTT----GATCTAACAAAAGGTTC--------A----AACATTGGACTCAC---------------------------AGTT--------------------------------------------------------------------------------------------------------------------------CC------------------------CCCTCCTCCATGTATTAGTCGTTTTATTTGTTTTGGCCCAAAAAAAAAAATAATGTTTT------AGCA-----------------------------------------------GG-----------------------------AA----------------------------------ATTCAAGCCAGCACGATATTAT-GGTTATAAATAAATTAATTTAAATTCTTGATATTATATATATTATAAAA--------------------------G----------T--TGTTGTTCATTGA
droVir3 scaffold_13049:22677310-22677495 - AGGCGGTG------------------------CGGCT------------------------------GCAGCAAACTTTATGGGCTTCAGCTTGCCACCTGGAAGTGAGTATTTG-------------ATACAGACA---------------------CATCA--------TTATT--AACCCATCATT---------------CATA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TT-TTTGT-------------------------------------TGTTCAGATTAAATGATCAAGTC-------------------------ACGTTTAAAACAAATT---------AGGCAATGCAAGCGC------------------------------------------------------A-------TCAAATTGG----------------AGTTTTCTCAATGA------------------------G----------C-----------CGTA
droMoj3 scaffold_6680:17296510-17296587 - AATGTCTGCTGCCAACGCAGGAGGAAGTA---GTGCT------------------------------GCGGCTAATTTCATGGGCTTCAGCTTGCCACCTGGAAGTTAGTA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droGri2 scaffold_15110:20855078-20855336 + AGCTGCTG------------------------GTGCTGGTGCCAGCGGTGCCGCTGGCAGTGCGGCCTCCGTCAACTTTATGGGCTTCAGCTTGCCACCAGGAAGTGAGTATTTG-------------ACATATAT-----------------GCCTACA--AAGCCTTATTTAT-TTAATCCATCATT---------------CATT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTATTTGT-------------------------------------TGTCCAGACTAATTGATCAAAACA----------TTA--ATGG---------------AAAATT---------AAGCAAAATAACCGT---------------ATGC--------AATCT---CAGCAAGATCTTATCCGTTACGAATAA----ATTGG----------------TGTGTTATAA-------------------------------------------TTTTTTTTCTTG

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
AGCCGCCG------------------------CATCT------------------------------GGAGCCAGCTTTATGGGCTTCAGTTTGCCCCCTGGAAGTGAGTAGAAC-------------TCATCAACC-----------------------------------------CGTCCATCACT----TCCTTAACATTTCCCTCCCA---CAATGCACATT------------------TCTAAATTGGTTTT----ATTCTAGCAAAAGATAA--------A---------------------AAAATATGAGCAAAAG-ACAAA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAGACATCTT------AGTC-----------------------------------------------GA-----------------------------AA----------------------------------CATCT------AAAGATCTTAAATGTTATCAAGAATTTAATTGA----------------AGTATCATGAAGGA------------------------C----------C--TTTTGTTTTCGGASizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GA----------------AGTATCATGAAGGA------------------------C----------C--.............1812.00220000000000000000
......................................................................................................AAGTGAGTAGAAC-------------TCATC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1812.00200200000000000000
..................................................................................................................................................................................................CCTTAACATTTCCCTCCCA---CAATGCACA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.00100010000000000000
..............................................................................TATGGGCTTCAGTTTGCCCC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100001000000000000
droSec2
AGCCGCCG------------------------CATCT------------------------------GGTGCCAGCTTTATGGGCTTCAGCTTGCCCCCTGGAAGTGAGTAGAAC-------------TCATCAACC-----------------------------------------CGTCTATCACT----TCTTTAACATTTCCCTCCCA---CAATGCACATT------------------TCTAAATTGGTTTT----ATTCTAGCAAAAGATAA--------A---------------------AAAATATAAGCAAAAGGACAAGAAATTT-ATG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AACATCTTTAGAATAGTC-----------------------------------------------GA-----------------------------AA----------------------------------CATCT------AAAGATCTTAAATGTTATCAAGAATTTAATTGA----------------AGTATCATGAAGCA------------------------C----------C--TTTTGTTTTCGGASizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
No Reads
dm3
AGCCGCCG------------------------CATCT------------------------------GGAGCCAGCTTTATGGGCTTCAGCTTGCCCCCTGGAAGTGAGTAGAAC-------------TCATCATCC-----------------------------------------CATTCATCACT----TTTTTAACATTTCCCTCCCA---CAATGCACATT------------------TCTAAATTGGTTTT----ATTCTAGCAAAAGATAA--------A---------------------AAAATATGAGCAAAAGGACAAGAAAATT-ATG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AACATCTTTAAAATAGTC-----------------------------------------------GA-----------------------------AA----------------------------------CATCT------AAAGATCTAAAATGTTATCAAGAATTTAATTGA----------------AGTATCATGAACCA------------------------C----------C--TTTTGCTTTCGGASizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
......................................................................GCCAGCTTTATGGGCTTCA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1912.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...CGCCG------------------------CATCT------------------------------GGAGCCAGC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1912.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000
.............................................................................TTATGGGCTTCAGCTTGCCCCCTGGAAA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....GCCG------------------------CATCT------------------------------GGAGCCAGC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATAGTC-----------------------------------------------GA-----------------------------AA----------------------------------CATCT------AAAGATC...........................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................TTATGGGCTTCAGCTTGCCCCCTGGAA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000
.........................................................................AGCTTTATGGGCTTCAGC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000
AGCCGCCG------------------------CATCT------------------------------GGAGCCAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...CGCCG------------------------CATCT------------------------------GGAGCCAGCTTT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................TG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AACATCTTTAAAATAGTC-----------------------------------------------G...............................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000
..........................................................................GCTTTATGGGCTTCAGCT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................AAAGGACAAGAAAATT-ATG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AACATC...........................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...CGCCG------------------------CATCT------------------------------GGAGCCAGCTT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000
.....CCG------------------------CATCT------------------------------GGAGCCAGCTTTATGGGC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................T------------------------------GGAGCCAGCTTTATGGGCTTCAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................ATCT------------------------------GGAGCCAGCTTTATG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000
........................................................................................................................................................................................................................CAATGCACATT------------------TCTAAATTGGT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000
...............................................................................ATGGGCTTCAGCTTGCCCCCTGG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................GATAA--------A---------------------AAAATATGAGCA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000
droEre2
AGCCGCCG------------------------CATCT------------------------------GGAGCCAGCTTTATGGGCTTCAGCCTGCCCCCTGGAAGTGAGTAGATA-------------TCGTCAACC---------------------CAGTAGTTG--------AACTCCCCCTC--------ACTTAACATTCCCTTCCCA---CAATGCACTTT------------------TCTAAATTGGTTTT----ATTTTAGCAGAAGAGAA--------A---------------------ATAACATAAGCAAAGCGACAAGAAAATT-ATA-TCTTAAAAGAA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAACATCTTTTAGCAAGTC-----------------------------------------------GA-----------------------------AA----------------------------------CATCT------AAAGATCTAATACGTTATCAAGAATTTCA---A----------------ATGAATATGAAAAA------------------------C----------C--TTCTGCTTTAGGASizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
............................................................................................................GTAGATA-------------TCGTCAACC---------------------CAGT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010001000
........................................................................CAGCTTTATGGGCTTCAGCCTGCCCCC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010100000
.............................................................................TTATGGGCTTCAGCCTGCCCCCTGGAA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000010
..................................................................................GGCTTCAGCCTGCCCCCTGG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0011000000
.GCCGCCG------------------------CATCT------------------------------GGAGCC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000100
droYak3
AGCCGCCG------------------------CATCT------------------------------GGAGCCAGCTTTATGGGCTTCAGCTTGCCCCCTGGAAGTGAGTAGAGC-------------TCATCAACC---------------------TAGTAGTTG--------AACTCCCCATT--------AATTAACATTCCCTTTCCA---CAATGCACTTT------------------TCTAAATTGGTTTT----ATTTTAGCAGAAGAAAA--------A---------------------ATAACATAAGCAAAGGGAGAAGAAAATT-ATG-AATTAGAAGAA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAACCATCTTTAAG-----C-----------------------------------------------AA-----------------------------AA----------------------------------CAATT------TAAGATCTAAAATTTTATCAAGAATTTAA---A----------------AATAATATAAAATA------------------------C----------C--TTCTGCCTTAGAASizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
................................................................................................................................................................................................................................................................................................A---------------------ATAACATAAGCAAAGGGAGAAGAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00100000010000
.............................................................................TTATGGGCTTCAGCTTGCCCCCTGGAA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00101000000000
...........................................................................................................AGTAGAGC-------------TCATCAACC---------------------TAGTAGT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00100000010000
droEug1
AGCTGCTG------------------------CATCT------------------------------GGAGCTAACTTTATGGGTTTCAGCTTGCCACCAGGAAGTGAGTAGAAC-------------TCATCCTTA---------------------AACTAATTA--------TATTTCCCATCATT----TACTTAACATTCCCCTCCTA---TTATGCACATT------------------ATTAAATTGGTTTT----ATTATTGCAGAAGAAAA--------A---------------------AC---AGAATCATAAAG-----TAA------------------------ATTG-AAGAACTAATTCAA----G----------------------------------------------------------------------------------------------------------------------------------------------------------AA-----------------------CTATTTGA----AATA----------TATTTAAGG-------AAGATTTAA--------------------AATGGAAGCTTTATATTTTAT-------------------------------------TTGGCATT----------------------------------------AAG-ATGCAATATATAATCAAGAAGCAT-TAAGAAGTTTCAAGCATGATTATAGASizeHit CountTotal NormTotal
No Reads
droBia1
AGCAGCTG------------------------CATCT------------------------------GGAGCCAGCTTTATGGGCTTCAGCTTGCCCCCAGGAAGTGAGTAAAAC-------------TCATCCTCC---------------------ACGTAGTTC--------TTAC-TCCTTCATT----GAATTAACATTCCCTTCCCA---TAATGCACTTT------------------GTAAAATTGGTTT-----ATTCTTGCAGAAGATAA--------A---------------------GAAACGAAAGAATAAGAAGAAAGGGATGCAAGAAATTAGATGCATGCTAA------------AC----TTAAAGTAATGAA---------------------------------CACGAATTTACCAAACCAGTTTAA-----------------AAAATCATGAAATCTCG---------------------------------------------------------------CAAACTAACCA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAAA------------------------C----------C--TTTAATATTATTTSizeHit CountTotal NormTotal
No Reads
droTak1
AGCCGCTG------------------------CATCT------------------------------GGAGCCAGCTTTATGGGCTTCAGCCTGCCACCAGGAAGTGAGTATAAC-------------TCATCCATC---------------------AAGTAGTTA--------TTATCCTCATCATT----TATCTCACATTCCTCTCCCA---TATTGCACTTT------------------ATTAAATTGGTTTA----ATTCCCGCAGAAGAAAA--------A---------------------ATAACAAAAGCATAAGGAGAGGAAAATGCAAGAATTC-------------------------CT----TTAAACCTATCTA---------------------------------TATAAATTCATTAAAGCCGTTGAA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AACAATCAAGAAGCTTTAAATAGTAT-------------------------------------TTCCCATA----------------------------------------AAG-ACGTAAAAACTAA-------------------------TACATTTTTAGCASizeHit CountTotal NormTotal
No Reads
droEle1
AACCGCTG------------------------CAGCC------------------------------GGAGCCAGCTTCATGGGTTTCAGCTTGCCGCCAGGAAGTGAGTTTAAT-------------TTATTTACC---------------------ATGATGTTG--------CATCGACCATAATT----AATTTAACATTTCCCTCCTT---TAATGCACCTT------------------ACTAAATTGATTAA----ACTTTTGCAGAAGATAA--------A---------------------ATAACAAAAGCATAAGGACATGAAAATCCAAAAAA-TAGCAGCATGAAATTAATTA-----------------------------------------------------GCTT------------------------------------------------------------------------------------------------------------------------------------------------TAA----AATGTTTTACGATTTTTGCAATG-------AAAATCTGAAAGTTAAAAAAGGGATTCAAGCAAGAAGC---------------ATCAAATATTAACA---------------------ACTAATC------------------------------------AAGAAGAA------------------------T----------C--GATTAATTACTAASizeHit CountTotal NormTotal
No Reads
droRho1
AGCCGCTG------------------------CATCC------------------------------GGAGCCAGCTTTATGGGTTTCAGCTTGCCGCCAGGAAGTGAGTTTAAA-------------GTATTTATC---------------------ATGTAGTTG--------TAAATCAATTCATT----TATTTAACATTCCCCTCCTA---TAATGCACTTT------------------ATTAAATTGATTCA----ACTTTTACAGAAGAAAA--------A---------------------ATAACAAATGCTTAAGGAGATGAAAATCCATGAAATTAACAGCA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGAACATCTCTAAATTAATCA--AAATCTTCTTGA----TATG----------TTTACGATG-------AAGATCTGAAAACTAATGAAAGGTTTTAAGAAAG-TT-------------AGCATG----------------------------AAAATTTCATC------------------------------------AAGAGGCA------------------------TTAAAG-----A--AATAGCATAACGASizeHit CountTotal NormTotal
No Reads
droFic1
AGCCGCTG------------------------CATCC------------------------------GGAGCCAGCTTCATGGGCTTCAGCTTGCCGCCAGGAAGTAAGTATAAT-------------CCATACACA---------------------TAGTAGTTT--------TTACTCCGATCATG----TCTTTCACATTCCCTTTCCT---AAACGCACTTT------------------ACTAAATTGGTTTA----C--CTTACAGAAGAATA--------ATCGAAGCATACGGCTAACAAAGTAGAAAATAAT-AAGGGCAGGAAAATT-TTG-------------------------------------------------------------------------------------------------------------------------AAATAATCT--------------------------------------------------------------------------A---ATGTG-----------------------------------------------GAAAGATCTGAAAACTAA---------TCAAACAAAAAT-----------------------------------------AGCTCTACAAACAAATC-------------------------------------------------------------------------------------------AAGASizeHit CountTotal NormTotal
No Reads
droKik1
AACTGCCG------------------------CTTCG------------------------------GGAGTCAACTTTATGGGCTTCAGCCTGCCGCCAGGAAGTGAGTAAAGC-------------TTAAACCTA---------------------AATTAATCT--------T--CATTTATCACTTAGTTCATTATCATTTCCTTCCTTTAACTATGCACAAT------------------TTGAATTAGCTTTT----ACTTTTGCTGAAGGAGGTGGTGATAA---------------------A------AAG---AATGACAAGTAA------------------------TCAATAGGAAATGATTCAT----G----------------------------------------------------------------------------------------------------------------------------------------------------------AA-----------------------TGTATAGA----AATA----------TTT--ATTAAAAGGG------------------------AATCGAAATGGAAG-----------------------------------------------------TCATCAAGTATT----AGT----------------AGGATCATTAAAC-CCATAAAGTATAT-------------------------TAATATTATGGAASizeHit CountTotal NormTotal
No Reads
droAna3
TGCAGGTG---------------CAACTGGGGCCACG------------------------------GGTGTTAGCTTCTTGGGATTTAGCTTGCCGCCAGCAAGTAAGTAAATT-------------CGAAT--CT-----------------------------------------TGTTTTTCATT------TTTAAAATTCATTTTCTT---TGTCGCACATT------------------ATTCATTTTAA------------------------------------------------------------------------------------------------------------------------------AACCATTTCACTGCAAATAGCACCAAGAAAACGGTCCACTATCTC---------------------AAACATGTAGTCTCGAGAATTTCAAGAAA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAATAGCCASizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
...................................................................GGTGTTAGCTTCTTGGGAT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1912.002100010
...............................................................................TTGGGATTTAGCTTGCCGCCA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001100000
..............................GGCCACG------------------------------GGTGTTAGCTTCTTGGGA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001100000
...................................................................GGTGTTAGCTTCTTGGGATTTAGCT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001100000
......................................................................GTTAGCTTCTTGGGATTTAGCT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001000010
.........................................................................................................................................................................................................ATTCATTTTCTT---TGTCGCACA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001010000
droBip1
AACTGCGG------------------------CCTCG------------------------------GGAGTTAGCTTCTTGGGATTCAGCTTGCCGCCAGGAAGTGAGTAACTT---------------AA-AATT-----------------------------------------TATTTATTTTT----ATTTTAAAAATCATTTTATT---CGTTGCACATT------------------ATTTATTT-----------------------------------------------------------------------------------------------------------------------------TTAAACCCATCTCACTGCCAGTATCATCAAGAAAGCAGTCTAATGACTC---------------------AAACACTC-----------------------------------------------------------------------------------CATCTT------AGTTGACAAAATTTCAAGATACAATA-------------------------GCAAGATCAAACA-----------------------------------------------------------------------------ACTAATCAAGATAATAA---C----------------AATAA-CTGGGATA------------------------T----------T--TTTTGTTGCCAAASizeHit CountTotal NormTotal
No Reads
dp5
-GCCGGCG------------------------CTGCG------------------------------GGTGCCAGTTTTATGGGCTTCAGTCTGCCGCCAGGAAGTGAGTAATGCAATCCTTCAGA------------TATCCCCACACACATGTTCA---------TTACTTAT---------------------T--------------------CACGCATAAC------------------CATGATTTGGCCTTCAACTTTTTAGCGGAAAGTA----------------------------------AAAAATGCTAAAAGGCAAGCAAGTT--------------------------------------------------------------------------------------------------------------------------CCAAGAAAATCAAGAAATCAAGAGCCCCCCAC------------TCATTTTAT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGTTATC-------------------------------------------------------------------------------------------AAAASizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
.....................................................................................TTCAGTCTGCCGCCAGGA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1812.0020200000000
...................................................................................GCTTCAGTCTGCCGCCAGGAA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010100000000
............................................................................TTTATGGGCTTCAGTCTGCCGCCAGGA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010100000000
.............................................................................TTATGGGCTTCAGTCTGCCGCCAGGA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010100000000
............................................................................TTTATGGGCTTCAGTCTGCCGCC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010100000000
droPer2
-GCCGGCG------------------------CTGCG------------------------------GGTGCCAGTTTTATGGGCTTCAGTCTGCCGCCAGGAAGTGAGTAATGCAATCCTTCAGA------------CAATCCCACACACATGTTCA---------TTACTTAT---------------------T--------------------CACGCATAAC------------------CATGATTTGGCCTTC---AACTTTTTAGAGGAAA-------------------------------GTAAAAAATGCTAAAAGGCAAGCAAGTT--------------------------------------------------------------------------------------------------------------------------CCAAGAAAATCAAGAAATCAAGAGCCCCCCAC------------TCATTTTAT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGTTATC-------------------------------------------------------------------------------------------AAAASizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
.............................................................................TTATGGGCTTCAGTCTGCCGCCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001010000
....................................................................................CTTCAGTCTGCCGCCAGGAAT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001010000
droWil2
TGCCGCCG------------------------C------------------------------------TGCCAGTTTTATGGGCTTCAGCTTGCCACCCGGAAGTGAGTATTGAAGTCATCTCCTTAACACAGACGAATATTCCATTCATT--------------------------CAATCATTATT----CATTTAATTTTTATTT----------TGCTTAGCCAAAACGGAAAGCACTTGACTC---AGATCTT----GATCTAACAAAAGGTTC--------A----AACATTGGACTCAC---------------------------AGTT--------------------------------------------------------------------------------------------------------------------------CC------------------------CCCTCCTCCATGTATTAGTCGTTTTATTTGTTTTGGCCCAAAAAAAAAAATAATGTTTT------AGCA-----------------------------------------------GG-----------------------------AA----------------------------------ATTCAAGCCAGCACGATATTAT-GGTTATAAATAAATTAATTTAAATTCTTGATATTATATATATTATAAAA--------------------------G----------T--TGTTGTTCATTGASizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
..............................................................................TATGGGCTTCAGCTTGCCACCCGG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00101000
..................................................................................GGCTTCAGCTTGCCACCC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00101000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATTTGTTTTGGCCCAAAAA........................................................................................................................................................................................................................................................................2011.00100010
droVir3
AGGCGGTG------------------------CGGCT------------------------------GCAGCAAACTTTATGGGCTTCAGCTTGCCACCTGGAAGTGAGTATTTG-------------ATACAGACA---------------------CATCA--------TTATT--AACCCATCATT---------------CATA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TT-TTTGT-------------------------------------TGTTCAGATTAAATGATCAAGTC-------------------------ACGTTTAAAACAAATT---------AGGCAATGCAAGCGC------------------------------------------------------A-------TCAAATTGG----------------AGTTTTCTCAATGA------------------------G----------C-----------CGTASizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
....................................T------------------------------GCAGCAAACTTTATGGGC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001001000000000000000000000000000000000000000000000000000000000000
...................................................................GCAGCAAACTTTATGGGCTTCA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001000000000000000000000000000000000000100000000000000000000000000
.......................................................................CAAACTTTATGGGCTTCAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001000000000000000000000000000000000000010000000000000000000000000
........................................................................AAACTTTATGGGCTTCAGCTTG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001001000000000000000000000000000000000000000000000000000000000000
......................................................................GCAAACTTTATGGGCTTCAGCTT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001000000000000000000000000000000000000000000000000000000000100000
....................................................................................CTTCAGCTTGCCACCTGGAATGT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001000000000000000100000000000000000000000000000000000000000000000
.............................................................................TTATGGGCTTCAGCTTGCCACCTGGAA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.001010000000000000000000000000000000000000000000000000000000000000
....................................................................................CTTCAGCTTGCCACCTGGA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001001000000000000000000000000000000000000000000000000000000000000
droMoj3
AATGTCTGCTGCCAACGCAGGAGGAAGTA---GTGCT------------------------------GCGGCTAATTTCATGGGCTTCAGCTTGCCACCTGGAAGTTAGTA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
..........GCCAACGCAGGAGGAAGTA---GTGCT------------------------------GC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2613.003000003
.....................................................................GGCTAATTTCATGGGCTTCA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2012.002200000
.................CAGGAGGAAGTA---GTGCT------------------------------GC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1912.002000002
.......................GAAGTA---GTGCT------------------------------GCGGCTAATTTCATGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.001100000
...............CGCAGGAGGAAGTA---GTGCT------------------------------.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001000001
......................GGAAGTA---GTGCT------------------------------GCGGCTAATTTCAT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001100000
............CAACGCAGGAGGAAGTA---GT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001100000
........CTGCCAACGCAGGAGGAAGTA---GTGCT------------------------------GC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.001100000
..................................GCT------------------------------GCGGCTAATTTCATGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001100000
.....................................................................................TTCAGCTTGCCACCTGGA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001100000
..........................GTA---GTGCT------------------------------GCGGCTAATTTCATGGGC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001100000
droGri2
AGCTGCTG------------------------GTGCTGGTGCCAGCGGTGCCGCTGGCAGTGCGGCCTCCGTCAACTTTATGGGCTTCAGCTTGCCACCAGGAAGTGAGTATTTG-------------ACATATAT-----------------GCCTACA--AAGCCTTATTTAT-TTAATCCATCATT---------------CATT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTATTTGT-------------------------------------TGTCCAGACTAATTGATCAAAACA----------TTA--ATGG---------------AAAATT---------AAGCAAAATAACCGT---------------ATGC--------AATCT---CAGCAAGATCTTATCCGTTACGAATAA----ATTGG----------------TGTGTTATAA-------------------------------------------TTTTTTTTCTTGSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
...............................................................................ATGGGCTTCAGCTTGCCACCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00110
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAACCGT---------------ATGC--------AATCT---CA...................................................................................................................1911.00110

Generated: 05/18/2015 at 11:06 AM